RNA id: XM_043224856.1


Basic Information

Item Value
RNA id XM_043224856.1
length 4043
RNA type mRNA
GC content 0.50
exon number 23
gene id LOC122328840
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 2464186 ~ 2479525 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaatataaccGATGGACGAAGCGTGTTTCTGTCGCTCAACAGAAAAAGGGAAACCGTTCTGAATGCCCATAGCGTTCCGTCGCGTCGCGTCGCTGCAGAGCAGATGAGGCGAGTCCAAGcattatgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggcgtatACAGTGACACTCAAACACACCTGTCATTCCCACACACGGAAGAGAGCGCGATACGCGATGAAGCATGTCGTGACAGCAAGCGCTCGAGCTTATCGTTCCACGCATCTGTAAACGTTGCGTTCGATCGCTTCACGACATCCCGCGTCGCGTTCATTCCACAGCGAAGATGAGAGCTGTGTGGCGTTTCGTCTGCGCAGCTTTCATGCTCTCGCCGGTTTGGTGTGAGTCTCCTGATTCTGATGGAGACTTTGTGCAGTTTGGACATGCTCCTGACGGAGTCATTGACAAATGTGATGTAGAGGTGCAGTATAATTGCTCTGCTGCCTGTCGAATCGGGGTAGAAATAGTTATAACTACCCCAAGAAGGACAGGCGTGGTCGTCTACAGAAGGACTTGGGCTAACCGTGAGAATTTTGGAAAACCCAGATCCAGAACGTTTAATCTAGTGTTTCCACCAGCGGTGCTGTACAGGAGAGACTTTTTTGTCAGGCGACCACTGGAGACGTGCAGTGTGGTGCTGAGGGCCTGGACGGTTCATCTAGTTGAAAAGGAAATCGGTGGCAACCGTGAAAAAGGATACGAGCAATCTCTTGTGAGAACTTCTACGTCTTTGAGGACGCTTCCACTCGCTGAGCGTCCAGCATACCCCCAGACAAGTTCGGTCTCATGGGGCGCGTGGCTGATGTGGCAGCTGACCAAAGATACCGTGAGAAAATGTCCACAAGAATCAGACATTGTGGATATCCTGACCTTTCCATTCGCAAGCACTGGTGAGAGGTTTGGTGTCATACACACGTTCTCACCCTTTAGAAACAGAGATCTAGAATGGAGACGTATCCTCGCTTTCAAACAACCAAGGGTGACTCTGTCCGTGTGGCTGTACTTGCTGAGCAGGTGCAGCCAGTCAGTGTGTGGCATTGTCAAGCATGTTAATGAACACAGGAGCTATGGGAGTCCACTTATTATGCTGTCTGATACAGGTGATATAGTGGTGCAGGTGCAAATGGCGGATGGAGAGGAGCAGGCATTTACCGCGCACGCTGCTTTACCCCTACATACCTGGATCCGTCTGGACATCTTCTTTCAGCTGTCAAAGGCAAAACTCACAATTACAAAGACGTTACCCGGAGAAGAGACTTTGGAGACCACTCATTTTTTTGAtTTTCGGCAGGCCATTCAATTCAATGACACGTCAGGATATTTCGTGATTGGTGGATGCAGCTACATGCAGGGCTTTCATGGCTATATCGGACCAATCAGATACTCTCGTTTAGGCTCAGAAAACGTGACAAACCCCCTGTCCCCCGCGAGGACGCTAAAGAAGCTAGACAGAGTCCACAGACACTGTGAGGAAATGAGACATGTTACTGAAGACTATCTGCAAGCTTTGAGACAGAACCGAGACATCTCTAGAGAAGTTTGTGAGTCTTATTATGGCGGCCTTAAGAGGAAGTTTGGTCATAGGGAATGTACACAAACCTGGTCGTGGGACCAGCAAAGGAGATTCAACCTTACCCTGAGGCTTTTAGAAGAACACCACGATCTCATAAAAGGTCTGGGCAACAGCAGCACACAGTTACTAGGTCGAGTGATTTTCCAGGATGCTGTGAAGACGATATCTAAAGCAGAGGAATCTGATGGCAGCCTGGATGTCATGTCCAGTGTTATTGAGCAGCTTCGGGTGTCCTCCTGCTGGGGTCACCAGCACTCCTCTCTCCTGCTCGCCACCCTGCTCCTGGCTGGCCTGGGCGTCCCGATGGACCTGGAACAGGGTCATGTGTATAGTTTGATAGGAGGCGTCTCCGATGACCGTCTCGCTCTGATGCATTTGGGATACAAGCACATGCAGGGTCTGGACGGTTTCCCTAAAGACCAGAACACAGCATACGGCTACTACGCCAACATCGGCAAACAGACCAGCATTGACCGCGATAAAGTACAAGACTCTTGGCAAACTCTTACAGaacacattcatttaaacaatgaCGACGAGCTCCACACGCAAACGGGCGAGCTGGGCGACATTGCGCAGTATTTGAAACACCAGGCTGACAGAGGAGATGTAGAGTCTCAGAAATCTCTGGCCAGGATGCTTCTGTGGGGCAGTAACGGGATGAAGAAAGACATCCGAGCAGCAGTCATGTGGTACGCCAGAAGCGCCCAGCAGATGGTCGATCCCATCGCCATGTACGACTACGCCATTCTCCTCCTGAAGGGCATAGGAGTGAAGAAGAACCGGACGTTTGGTCTCGAGCTTCTGAAGAAAGCCGCCGACATGgGTTCGGTAGAAGCTCTGAATGGCCTCGGATGGTACTACAGTACCATAGTCAAGGACGGAAGAAAGGCCTTTCGATACTTTGAGCTGGCGGCTCAGAACGGCAGTCGTGATGGACTCTTCAATTTGGGCATCTACCATTTAAATGGTGACAATCCTGACAAACCAGAAAAGaatgagACCGCTGCGTTctactacttcttggatgcgGCTGAGTTGGGTCACATGGACGGCGCCGTGCAGTCAGCGTTGTTTCTCTCCACTGGATCTACACAAGGAGTGCCGAGAGAGCCAAATAAAGCTGTGCTgCTGTTGAAGCAAGTCAGTGAGATGAATGGACACCTGGGTTTCATGGTTAAAGAAGCACTTCAGACTTATCAAGGAGGATCATGGAATGAAGCGTTGGTGAAATATGCCATGCTAGCAGAAACTGGTCTGGGTGTGGCACAGCACAACGCCGCCCATCTGTGTGAGCTGTTATATCACGGTTCTGCCTGTCAGTGGAGGTACCACAACTACTCCACCTACAACCACATCCCTCAGGAAGCTGGCTTATTGCGGATGGGAGATTATTACAGTGAACTAGCTGATATGGTGAAGGCCATAGACATGTACAGTACTGCAGCAGTGCATGGCAGCGCTCAGGGCCTCTTTAATCTGGCCACATTAATTGAAGACGGTTATGAAGTTCCTGACATTATTCGGGATCAGATGGGACTCTCAGATGCACACAGTGTGAGCCGGAGCGATGTGGTGGCAGATCTAATATCCAGGTGCTGGGAGTTGGAGGAGGGAGACGTGACCCCGTGTTCTCTAGTGCTCTGGAGGATGGAGCTGAGGAGAGCGTGGAGAGACTTCACACACAGCTCTGTTCATCTGCCTCTGGCCTGCGGGATCTTCGCCGCGCTCGCAGCCTTTGCATTCGCTGTGCTGTTACGAACCCTTCTGGGTCGCTCTGCGCTTTACCTGTCCACTAGTCAGTCACCAGACAGACACGGGACACCTGAAGCTGAGGGCCCGGAACAGGAACTCATCGCCATTCGGCGCAGGAAGCGTCTGATTTAATCGTGACAGTGACTGGAGTCTGCGCATGCGTGCTCTTCGTCACGTTCATTTCCCATCTGCTTTGAAAAGAGCGTAAGACTATGCGTCCGTCAAGAGCTCGCTTTATCTCAGCGTACTGCAGGAGAACTGAACCAGTGTAAATACACCTTAAGGCAGTGTTCACACCTGGCGTTTTTTCTGACACGAAAGtgttttttatggaaaataatacGCTGTTACAAAAAAGCAGCCGAGAGCgtttgttgctatagcaacgGCAGCCTAGCGCGGCGTGCGGCAGAAATGTCGTGAAAGCGTGGaaagttgtagtttttttcaGCCCGAAAAGACTCTCTTAGCTGCATAAAAAAAGTCCAgcggattcgttttaaaaagcGCTGATTACTTTTTGAAGACACGTTAACTTCCTAGGACTCTTAATTCAGAAAAGACGCTAAGTGTGAACGTAGCCTTCGGATGAATTCATGAACAAAGTGGCCGGTAACCTGTGTTGATTCATCTACTTTTTCTAGGTGAAATAAAGTTTGAACACTGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228410 lncRNA downstream 159778 2301610 ~ 2304408 (-) True G154247
TU228406 lncRNA downstream 159778 2301857 ~ 2304408 (-) False G154247
TU228409 lncRNA downstream 159991 2301610 ~ 2304195 (-) False G154247
TU228407 lncRNA downstream 160168 2301857 ~ 2304018 (-) False G154247
TU228405 lncRNA downstream 163620 2300255 ~ 2300566 (-) True G154246
TU228445 lncRNA upstream 360 2479885 ~ 2480254 (-) True G154277
TU228446 lncRNA upstream 1082 2480607 ~ 2480873 (-) True G154278
TU228461 lncRNA upstream 9220 2488745 ~ 2583087 (-) True G154288
TU228518 lncRNA upstream 168629 2648154 ~ 2656582 (-) True G154336
TU228523 lncRNA upstream 180025 2659550 ~ 2659861 (-) True G154338
XM_043224899.1 mRNA downstream 195279 2245740 ~ 2268907 (-) False cpeb2
XM_043224898.1 mRNA downstream 195279 2245740 ~ 2268907 (-) False cpeb2
XM_043224897.1 mRNA downstream 195279 2245740 ~ 2268907 (-) False cpeb2
XM_043224896.1 mRNA downstream 195279 2245740 ~ 2268907 (-) True cpeb2
XM_043224930.1 mRNA downstream 223535 2234831 ~ 2240651 (-) True LOC122328872
XM_043224929.1 mRNA upstream 222290 2701815 ~ 2714305 (-) True epm2a
XM_043224880.1 mRNA upstream 234972 2714497 ~ 2720029 (-) True fbxo30b
XM_043224926.1 mRNA upstream 244316 2723841 ~ 2726856 (-) True LOC122328868
XM_043225365.1 mRNA upstream 247305 2726830 ~ 2729496 (-) True LOC122329165
XM_043225366.1 mRNA upstream 251297 2730822 ~ 2759122 (-) True LOC122329166
XR_006247837.1 other downstream 347303 2102710 ~ 2116883 (-) False LOC122328833
TU228042 other downstream 951857 1507810 ~ 1512329 (-) False smim29
XR_006247839.1 other upstream 291882 2771407 ~ 2782853 (-) False LOC122328838
XR_006247842.1 other upstream 307771 2787296 ~ 2798533 (-) True LOC122328849
TU228731 other upstream 445523 2925048 ~ 2957272 (-) True G154446
TU228725 other upstream 446004 2925529 ~ 2951628 (-) True G154445
TU228726 other upstream 446004 2925529 ~ 2942569 (-) False G154445

Expression Profile