RNA id: XR_006247840.1


Basic Information

Item Value
RNA id XR_006247840.1
length 2697
RNA type transcript
GC content 0.59
exon number 19
gene id rbm10
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 2995169 ~ 3010017 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTGTTCGTGTCAGTGTGTTTTAAGCCAATCAGCCGGAGAGAGGTGTCCCCGCCTCCCGGACCGAGGCCATCTTACGCCGGGCTCCGCTGTGGCGCGGCGCACACATACGCCGTATCGGTTTCAACGCTGCTGGCGGGGCAGAGCAAATGAAGCGGGCAGAGAGGAAAAGTGGGCGTTTCTGACGACTTGCAGTGAAGCATGGATTACGAGAGGAGGGGCGGTCGTGGAGATCGGATGGGCCGCTATAGGAAAGATTCTGACGATCATGACTATAGGGACATGGACTATCGCGGTTACGGGCAAGAAAATAGACCGAATAGCAGTTTAACAAACGTAAGACCGCAAGAGCCCGATAGTAGTTTTGAAGGCATGAGAGACTTTGCCTCGGGTAACTTTTCGACTAACCGACCCGGATTCAGACAAAAGGGAAACCACGGATCCGAAAACGGCCCACTTGGAAAAAGCCTCCTCCAAAGTCCCCCCAATGAGAATATCCACTCGGGATTCCAGCAAGACGATAAGGATTATGAGTTTGAGCCAGAGACGAGTGCGCACAGGACGTATAGATCAGGACAGAAGGTCTATCTGGATGAAGGGACCCCGGATGAAGGTGAAGAAAACGAGGACGACGCCTGGGGCAGAGTTAGAGGGCGGCACGACTCTCAGGGCGAATACGGTGCAGAATGGAGAGCTGAGGAAGACAAACACGTCAGACACGCGCACAAACAAGGGTTTCCCGATGAATCTCAACTAGCTAGGGACAAAATAAGAGACGGAAGGTTTCATCCCGCTCTGGAAATGTGCCAGGAGGAGGCCGAACCCCGCGACCAGGACTACAGGTCTGATACGGAGCAGGTCCAAAAACCCAGCAACATTGTCATGCTGAGAATGCTCCCGCCAAATGCAACCGTTAACGAGATTCGGGCTCGACTGCAGGAGCAAGGGATCCAGCCCAGAGAGGTTCGCCTCATGAGGAACAAGTCTTCAGGTCAGAGCAGAGGATTCGCCTTCGTCGAGTTTAATCACTTGCAGGAGGCCAGCCGCTGGATGGAGACCAACCAGagagttctcACTATATTGGGACAGCGTGTATCCATGCACTACAGTGACCCAAAGCCCCGCGCAAACGAAGACTGGCTGTGCAATAAGTGTGGAGTACAGAACTTCAAACGAagagaaaagtgttttaaatgcgGAGTTCCAAAATCAGAAGCCGAGTTGAAACCGCCTCTGGTGCCAAAGAGTTTACCTCTGGGGCAATTAAAGGACTCGGCTCGGGGTTTACTGCCCCTTCCTGCCATATACCAGACAGCAGCTCCACTTATCAACTTGAGCTCCTCGTCCCCGGCTGCCGAGGTGGCCAACGACAGAGGCTTCGCAGCTGCTTCAGATCCTCCAGTCCCTGCAGCCTCCTCTCTCTATCGATGGGAAGCTCATCTCTGTGGAGTTCGCCAAGGGCTCCAAACGcgACGTTTTCCTGACGGACGGGAATCGGGCGAGTGTGGCGACGGTAGCGAGTACAGCTATAGCCGCAGCTCAGTGGGCCGTCACTCAGACGTCCCAGCTGTCGGCTGCGGCTCCGGCGCTGATCTGTGTGCGCACCAGCAGGGGGCGGCGGCGGCGGCCGCGTTCGGGCAGGAGGCCGCGCAGCTTCTCGGCGCAGACGCGCCAGCCTTTAAAGGGCCGGCGTCTGCGCCGCCGAGCGGCCGCGCAACGTTACGGGCTCCCGacggaggaacggcccccccggGTATAAGGGCAGCTTCAGGAGAAGCGGGCGCTACGTCCGTACCGTCCCAGACCCAGCGCGTCACGGCTCCGACCTCCACGCAAGCCCAGCAGGCCCCGGTGGAGATTGTTGGGAAGCCTCGGCCCGCGACCCCGAACCAGCCTGCCACGCCTGGAACCGCTCTGGAGTGCCAGCAGTACCCTGATCCCGACGTGTCCACGTACCAGTACGACGAGAGCTCGGGCTATTACTACGACCCTCTTACAGGCCTCTACTATGACCCCAATTCACAGTACTACTATAACCCCCATACGCAGCAATACATGTACTGGGATGGGGAAAGACGCACGTACGTTCCCGGCCCGTCACGGACGtccgacgacgacgacgacggcGGCACGGACGGCGCGAGCTCCGAGCTCCCAGGCGCTCCCAACGGCGGCAAGGACAAGAAGGACAAGCCCAAGAACAAGACGGCACAGCAGATCGCCAAAGACATGGAGCGGTGGGCCAAAAGTCTGAACAGGCAGAAGGAGAACGGGCGAGCGAGCGGCAACTGTCGAGCGACGACGCCGGGGAGGCCCGACGAGCGGCGGGAATCTGCCAGCGCCGACGCAGGCTACGCCGTCCTGGAGATGAAGGGCGCCTTGCTGGAGAGAGCTCAGATTGCGACGGAGCAGATGAAACATGTGGAAGAAAGAGAGCAATATCCGTCTCCTGGCAGAGTCCTCCTCGGGGTCTGGCGGCGGGATACAGCGGAGAGACGGACAGCGAGGAGGAGgccggagagagagaggagaggctGACGGACTGGTCCAAATTGGCCTGTCTGCTGTGCAGGAGACAGTTTCCCAGCAAAGAGGCTCTGATCAGACATCAGCAGCTGTCGGAGCTCCACCGGCAAAATCTGGAGCAGAGGAGAGCGAGACAGAGTCGATCGGAGCCACAAGAGCGGTCGGAAACGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228686 lncRNA upstream 38034 2947774 ~ 2957135 (+) True G154425
TU228683 lncRNA upstream 45711 2945990 ~ 2949458 (+) False G154424
TU228692 lncRNA upstream 52601 2925579 ~ 2942568 (+) False LOC122329169
XR_006247846.1 lncRNA downstream 1703 3011181 ~ 3021971 (+) False LOC122328882
XR_006247845.1 lncRNA downstream 5714 3015192 ~ 3021971 (+) True LOC122328882
XR_006247847.1 lncRNA downstream 39920 3049398 ~ 3051276 (+) True LOC122328883
TU228786 lncRNA downstream 84773 3094251 ~ 3097035 (+) False mitfb
TU228801 lncRNA downstream 103044 3112522 ~ 3113171 (+) True G154487
XM_043224938.1 mRNA upstream 1814 2989515 ~ 2993355 (+) False rhoac
XM_043224939.1 mRNA upstream 1814 2989671 ~ 2993355 (+) False rhoac
XM_043224940.1 mRNA upstream 1814 2989778 ~ 2993355 (+) False rhoac
XM_043224937.1 mRNA upstream 1814 2990141 ~ 2993355 (+) True rhoac
XM_043224924.1 mRNA upstream 6153 2983340 ~ 2989016 (+) False LOC122328866
XM_043224912.1 mRNA downstream 51031 3060509 ~ 3096180 (+) False mitfb
XM_043224913.1 mRNA downstream 55670 3065148 ~ 3096180 (+) False mitfb
XM_043224911.1 mRNA downstream 61428 3070906 ~ 3096180 (+) True mitfb
XM_043224941.1 mRNA downstream 124053 3133531 ~ 3137978 (+) True twist3
XM_043224877.1 mRNA downstream 309963 3319441 ~ 3352334 (+) True LOC122328845
TU228680 other upstream 38444 2948916 ~ 2956725 (+) False G154424
TU228663 other upstream 38444 2955085 ~ 2956725 (+) False G154424
TU228682 other upstream 44080 2948916 ~ 2951089 (+) True G154424
TU228661 other upstream 47457 2945990 ~ 2947712 (+) False G154424
TU229052 other downstream 685174 3694652 ~ 3696638 (+) False ube2t
TU229053 other downstream 685174 3694652 ~ 3696638 (+) False ube2t
TU230095 other downstream 3583128 6592606 ~ 6594735 (+) False si:ch211-220i18.4
TU230359 other downstream 4216516 7225994 ~ 7238919 (+) True G155561
TU230347 other downstream 4289801 7299279 ~ 7304358 (+) False tcea2

Expression Profile