RNA id: XM_043224885.1


Basic Information

Item Value
RNA id XM_043224885.1
length 3980
RNA type mRNA
GC content 0.47
exon number 14
gene id LOC122328849
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 2787296 ~ 2798533 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCGTGTGGATAGTTTTGACAGCGTCTGAAAGCATCAAGCGTAGATCGTGCTTTAATTGTCCGTTATCGTAAAAATATCGTATTAGGCACaccttttaatatttcttccgAGTTTATTTCTGAAAGTCTGGGTCACCAAAAGCTACATTTCCACCGCTGCTGGCCAGGAAACATGACAAAGTTCATTAAACAGGTCCTTCTTCAGATGCATAGGAAAGGCAGGCTTGTAGTGAAATAGAATTATTCAGTGTAATGCTCTGTAATGTAATGTGCAGTGTTTATGTTTAGGAGCCGTAAAAATGACTAGTGTAACTTTACATTACAATaagtaaattgtttttttaagaaaagactGCAGGGACAGCATACCTGTGAACTCCTTAAAATTAACGTTCTTTACCTTACTgagtatttaaaatacacaaatgagtgtaaactgcattatttacattactttGTATAGGCTATACATGATTAGACTCCCCCCCAGTCTTCTGTTACACCTGTTTACACGTGTCTCATCCTCacttctgattggccagctcaTTCTCTTCCCCAGCTCTTATTGGCCAGCTGTTCTGAGGAGGCGGGGTTAGGTGAAAGTATCTgacatgccttaaagaaaagctCCATCTATATTCAGTCAAAACACAAGAAATAGAAGAGAGTGCAGAGTTTAGATTAAATAAGAGAAATCGGGATtcaaacagagaaaacagaTGGAAGGCCTCGGAGGAATCAGGGGGCTGGTGCTTTTGCTTGGAATAGTCTCACAGGCATCAGGCAGCACAATAACCGTGAGTGTTTTCACGGTGACATCAAAGAGCGCGGTGTTGCGCTGGAGCAAATATGAAGGCGCATTGTCCTACAAAGTAACAGCTTCTCTCCGAAACTCTCAAGTCCCTGTGGTCTTTGCCAGCTTTGGACAGAACACCATTATGGGCTCGGTGAATTCCCTGAATCCCAACACTGCGTACACCTTTCGGGTCGAGGCCCTGGGCAGCCAGATGGACATGCTGACAGATGCTACAGTGGATGGATCTACTGctCCTGATGTGCCCACCATTGTGATGGCCTCCTCTAAAGAAAGCCAGAGGATCACTGTGGAATTCTCTTTGGTCTCCGGGGCCACTTCCTACATCCTGCGCGCCGAGACAAATGACGGATCTTTCTTCTCAGAGATCTCAGTACCCGGCTCTCCGGGGACTGTCACCAACCTCCAGCCATACACAGACTACACTCTCAGTGTCATGTCCGTCAACAGCGCAGGCAGAAGCCAGCCTTCCATCTCCGTGGAGGCTAAGACAGTTCTTCCCGCTCCTCAGCTCAACACCAGCTCTCCCAGCAACAGCAGCATCCTGGTGAAGTGGGAGCCCGTGAATCACGCTGTCCTCTACAGCCTCAGCATCATCAAAGACGGCTCGTACAGCAAAACTAGTCTCAATATCACAGACACTCAGGTCAACTTTCCGAACCTGGAAGCAGGAACCAAATACTGCATTAAAGGAAATGCCTGGAGTCCTGAGAACATTCCCGGAGATGACTTCACAGTTTGCCAGATCACACGTTCTCCCACTCCTCAGTCCATCGCTCTGGTGGTGACAAGCACCCCTGATGCAGGTATTGTGGTGTCGTGGGACCCAGCTCAGGGTGCAGAGCAGTATGTCGCCTCGAGCTTGAACGGACATAACTGCTCCTCATCTACTAACTCCTGCGTCCTGATTCCTCTGAGCTGTGGAGAGACGAACTCTGTCACAGTGACGGCTGTCAATCAAGCTGGAAGCAGCGTCCCCTCATACCCCGTTCAGATCATTTCATTCCCTTGTCCCCCGCAGCCAGTCTGGGTGGAGGAACTGGTGCCCGGCAACTGTTCTGTGAAGTGGAGTGCCGTCCCTTACGCAGAGTACTACACCACCTTTATTAAAAGTGACGATGGCATTGAGGGGATGTGCAACTCAACCGAACTGTACTGTCAGTTTCACTGCTACTGCGGTTACTCGTACATCATGAGTGTGTTTGCACACAACCATGCTGGACCAAGCCCCCCGGGACCTCGCCTCAACCACACCACCTTGCCCTGCTGTCCGGATCTCGTGACGGTATCTGCAGCTTCTTGGGAGACTCTGGTAATGGACTGGACTCCTGTGCGTGGTGCGGATCTGTACGAGACCCGAGCTGTGGATGCAAATGAAGTGGTTCTGTGTAATGACACGGCGCCCAGCTGTGCCCTCTCTGACCTCGCTTGCAACAGCAAATACAGTGTAGTCATCATACCATGCAACGACGTTAGCGGCTGCAACCTCACCTGCAGTCCACAAACACATGAGACGGCTCCATGCATGCCGGAGATCACCAGTGTGAGCCAGACTAACATGAATAGTTCCAGTGTGCTGGTTAGCTGGACGTCTGATAACACAGTTGCTAATTACACCGCCAGTTTGATTGGCTTAGTAGGCGACACGCACGTCTGTAGCTCGAACGGCTCCTCCTGTCTGGTGTCCAACCTGCCCTGTGGCTCCATCTACGAAGTCAGTGCCATCGCATCAACCTCAGCTGGAGAGAGCATGCCCAGTTACATCGTCCCACTGGAAACAGCACCTTGTTGTCCAGACAGTCTCACGGTGAGCCAGGTGACCCAGGCCATGACTAACGTGACCTGGTCGCCTGCTACGAACGCCCAGACGTACATCGCTTCGCTGTCTTCACCTCGCGGACATGCTCAGTGCCACACTATGGATACAGAATGCGTGATGGGATGCATCACCTGCGGCACTAACTACACCGTCTCGCTGGAGGCCATCAGTCGCACCGGACACAAGGCGGAGTGCATCTTCCAGGGATTCTCTGCCAGTCAGTGCTGTCCCTCGGGCATCCGTCTCTATAGAGGAACCAATAACACGCTGATTGTGCGCTGGAGGTCCAGCAGCGCCCTCACTAGATACACAGCAGAAGTCACCGGGAGCGTCAGGACTCACACGTGCAGCCCAGAGCCCGGCTCCTACACATGCACCGTGTCAGACATCGTGTGCGGTCAGGTCTACACTGTGGTCGTGGCCCCACTGAACCCAGACGGAAGCAAGGTCCAGTTCTGTAACAGCAGGCTCTATTCAGTCACATGTGTGGGCAGCACTGTTGGACTGGTGCTCTATCAAGGAAAAAGATAATGATGGGATGGATGTCCTTCAAACGGTGAGCTTCTGGTCCTATTGGACGACTGGATCCTTCAAAACATGTCCCTAAACCAGGAAATAAAACGAACGCTTTGCAACTAAAAGAAGTTTATTGTATGCAGTGGCTTTTGCAGTGAAGTCATTTGAATACAATTAACTGAATAATGTAATTAGTCAGGATTCAACACTGTCCAATCacttgtgtttatatatttaaattgctttaaagatgtaatgtaatttatgtcGATCATGTAATATGATTTAATTAGAAGTGACACTGATTATTGGAGGAATTTGCAGTTTTCTTACAACGTGGCAAACATATAATCCATTCAACAAATTCATATTCGTGTTatcctaatttaattttcaggGATCCCTAATGTTATCTCAGGGATTTTCACTAAAGTCAATTCATGATCTTATTGCGTCACATTATTTAATGAACTCTATTACCAATAACACTATTTCTATTCAATTCTCCCCTTGATAAATAGTAACTAAAATAGTCACTTTTTTGGTGAAGTAAGTCGTACTAAGAAAGAACGTTTTGTTCTCATCAACACCCAAAcatctcaattaaaaaaaaaaaaaaaaagtaatttgacaGTGGTTACATCTATGCATCCGTTTCcatgaattatttaaacaaacataaaatgaaactaACGGTAACTGAGTTTGAACTCCTCTACGGTATGTGGTGCCTCTGAGGGAAAACTAATTGTTAATTGAACTTCCCTTAGATGTTTGTCAAATGCATGATTTGTTGGGATGTGAATCTGTAGTTTGACAGTAAAATTAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228523 lncRNA downstream 127435 2659550 ~ 2659861 (-) True G154338
TU228518 lncRNA downstream 130714 2648154 ~ 2656582 (-) True G154336
TU228461 lncRNA downstream 204209 2488745 ~ 2583087 (-) True G154288
TU228446 lncRNA downstream 306423 2480607 ~ 2480873 (-) True G154278
TU228445 lncRNA downstream 307042 2479885 ~ 2480254 (-) True G154277
TU228613 lncRNA upstream 22787 2821320 ~ 2823072 (-) True G154391
TU228616 lncRNA upstream 23481 2822014 ~ 2823072 (-) False G154391
TU228630 lncRNA upstream 48825 2847358 ~ 2847619 (-) True G154404
TU228631 lncRNA upstream 52781 2851314 ~ 2851524 (-) True G154405
TU228633 lncRNA upstream 54086 2852619 ~ 2853230 (-) True G154407
XM_043224849.1 mRNA downstream 4443 2769482 ~ 2782853 (-) True LOC122328838
XM_043224850.1 mRNA downstream 4658 2769482 ~ 2782638 (-) False LOC122328838
XM_043225366.1 mRNA downstream 28174 2730822 ~ 2759122 (-) True LOC122329166
XM_043225365.1 mRNA downstream 57800 2726830 ~ 2729496 (-) True LOC122329165
XM_043224926.1 mRNA downstream 60440 2723841 ~ 2726856 (-) True LOC122328868
XM_043224920.1 mRNA upstream 71085 2869618 ~ 2874758 (-) True si:zfos-905g2.1
XM_043224921.1 mRNA upstream 71085 2869618 ~ 2874754 (-) False si:zfos-905g2.1
XM_043224864.1 mRNA upstream 216083 3014616 ~ 3062072 (-) False frmd4bb
XM_043224867.1 mRNA upstream 216083 3014616 ~ 3057384 (-) False frmd4bb
XM_043224866.1 mRNA upstream 216083 3014616 ~ 3057384 (-) False frmd4bb
XR_006247839.1 other downstream 4443 2771407 ~ 2782853 (-) False LOC122328838
XR_006247837.1 other downstream 670413 2102710 ~ 2116883 (-) False LOC122328833
TU228042 other downstream 1274967 1507810 ~ 1512329 (-) False smim29
TU228731 other upstream 126515 2925048 ~ 2957272 (-) True G154446
TU228725 other upstream 126996 2925529 ~ 2951628 (-) True G154445
TU228726 other upstream 126996 2925529 ~ 2942569 (-) False G154445
TU228728 other upstream 143705 2942238 ~ 2951628 (-) False G154445
XR_006247838.1 other upstream 638246 3436779 ~ 3445964 (-) False LOC122328836

Expression Profile