RNA id: XM_043224896.1


Basic Information

Item Value
RNA id XM_043224896.1
length 6000
RNA type mRNA
GC content 0.48
exon number 11
gene id cpeb2
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 2245740 ~ 2268907 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCGGTAACGCGAGGAGGGGGATGCGCGGTCGGTCGGACGGCTAGAACGGCTAAAAAAAGCCGCAGACAATTAAATCCGCGAACAATATTTACAGCGCGTAAAAAGGCGACCGAAAGCTCCTCCTCTCTCGCTCCAAACAGGCTTAGGAAGTTACGGGACGCGGTGCCTCTCTTATTGTTCTTGAGCAGGCCTGGGGATAGGAGAGCTGCGCTGTTTTGACGCAGTTAAATGGGTGATTACGGGTTCGGTTTGTTGCAGACAGCGAACATCAGCAGCAGCTCCACTCGTTTCGGCGGAGGCGCATTCGCACCCTACCCCAGCGCGTCTCCGGTGCGCCCCGGCGGCTCGCCTCTGGTGTCCCCTCTTTTCCCGTCACATCAGCGCAACATGCAGGATGAGCCTGCGGGGCTGACAGCTTCCCAGTCCAACAGCGAGCAGAGCAGCGCCGCCGACAGCGACCTGAGCCGCTTCTCCGCTGTAGGTCACGCACAGACGGCCGGTGACCTTCAGCGCGACCGGAACGTACATCAGCAGACTGATCCGCCGCCGCCacctcagcagcagcagcagccgtactcctcctcctcctcctcttcttcctcctcctccacgGGCCTGGACACCGATGCGCCATCGTCCAAGGTGAAGCCCCAGATGGAGTCCCCCAGCGCGCACCACATTAACAATGGCACCGGCGGCAATAACATGCTCGCGGCAGCCGCGTTCCCAGAGATGCAGAGCCctggcggcggcggcggctcgGTTTCCCCCTCCCTGCCCGCTTTCGGGACGCCGTGGTCCGTGCAGACGAGCTCCCCGCCTCCGCCCGTCTCCAACGCCGCTAACGCAATAAACCCGATCCCCACCACCGAGCCTGACAACTTCTACCCCGGCATCCCCTCCTCTATCAACCCCGGCTTCTTCCAGAGCTTCTCGGCGAACCCGTGCCCGGTGCAGGGCTTCAGCAGCCCCTTCTCCCCGCAGATCAACGCGCCGCCGCAGAGCCGCCGGTCCCCGGTCAGCCCGCAGATCCCCCCGCAGCAGGGCGCCTTTCTGCAGCAGAGGAACAACTACAACCACCACCAGcCCATGATGAAGCAGTCGCCGTGGGGCAGCCATCAGGGCAGCGGCTGGACCTCTGGAGGGGTCTCCTGGGGCAGAGACCACCGGCGCGGGGGAGGCATGGGTGTGCCCGGCTCGGTCAATCAGATCTCTCCCATGAAGAAACCCTTCTCCAGTAACGTCATCGCTCCGCCCAAGTTCCCCCGCTCCGCCGGCTCCATGGGACCCAAATCCTGGATCGAAGAGAATATGTTCCGGACcgacaacaacagcaacactCTTCTGCCGCTGCAGGACCGGTCCAGGATGTACGACAGCTTGAACATGCACTCGCTGGAGAGCTCCCTGATTGACATCATGAGAGCGGAGCAGGACCCTCTGAAGGGCCGTGTGGGATGCCCCCACCCAGCCGCTGACGGCCTACTCATGCTCAATGCCAGGAGCTATGGGAGACGACGAGGACGTTCCTCCCTCTTCCCCATTGATGACGGACTTCTGGATGACGGCCATGGCAACCAGGGGGTCCCGGGGGTCCTGGGGTCTCCTCACTGTTACCCCCATCAGAACGGGGAGCGCATCGAGAGGTTCTCCCGCAAAGTGTTTGTGGGCGGCCTGCCTCCCGACATCGATGAAGACGAAATCACAAGCAGTTTTCGGCGCTTCGGTCATCTGGTTGTTGACTGGCCACACAAAGCGGAGAGCAAATCTTACTTCCCCCCTAAAGGTTACGCCTTCCTCCTGTTCCAAGAGGAGAGCTCAGTTCAAGCGCTGATCGAAGCTTGTCTGGAAGAGGACGGGAAACTCTACCTGTGTGTGTCCAGCCCCACCATCAAAGACAAGCCTGTCCAGATTCGACCGTGGAACCTGAGCGACAGTGATTTTGTGATGGACGGATCTCAGCCACTGGACCCTCGCAAAACCATCTTTGTAGGAGGAGTGCCACGTCCACTGAGAGCTGTGGAGCTGGCAATGATCATGGACCGCTTGTATGGTGGAGTGTGTTATGCGGGTATTGACACTGATCCAGAGCTGAAGTACCCAAAGGGGCCGGGGCGTGTGGCCTTCTCCAATCAGCAGAGCTACATCGCTGCCATCAGCGCCCGATTCGTCCAGCTGCAGCATGGCGACATCGACAAACGGGTGGAGGTGAAGCCGTACGTGCTGGACGACCAGCTGTGTGACGAATGTCAGGGGGCACGCTGTGGCGGAAAGTTCGCCCCGTTCTTCTGCGCCAACGTCACCTGCCTGCAGTATTACTGCGAGTTCTGCTGGGCGAACATCCACTCCCGCGCCGGCCGCGAGTTTCACAAGCCGCTGGTCAAAGAGGGAGCCGACCGTCCCCGACAGATCCACTTCCGCTGGAACTGAAGACGGGAACTCGGAGAGAGCGCCGGGAACGGCAGCATGCAAGACGACGCAGGAACAACAAGTCTGCTgcgggaaaaaaaaacgatgcTTAGTTTGGCCCCTGAACCCAAGCCGTCAGTATAGAGTACATAACcgtatacagtatatagagaatatatataactataaatatataaatatatctttatctTTTGTAGCAGCCAGAAACACTACAAGCCTCAGTTTATTTCACCAAACCacttctttctcctccctcccTGTGCATCTCAGGCTCGGAACAGAGTTTTTGTGGTACGTTcgtgttttttaaaaaggagattaagaaaaaacaagagattgattttttgtagttttttcaaaattatttttatatgtgagATTTAAAAAGTAGAAACGAGAATGTTTTCGCTTGGGGGGTGGGGGCAGCCCGTCTGTTCTGTTCATTCGTTCTGTCCGTCGCGTGTCCGTCTGCTGCTAAACCCCCTACCCCCCCCAAACCCCTAGTGGGCAAAGTGCGCAATTGTCTCTGGAAAACCCTTGATGACGCAATCTCTGATGCCTGCCCTGGATCTCGAACCAAAGGTAGCAAAATGCGCGGCCTGGAAACGAGACGTTTGCCGCggaatatacaaacaaaaaacaaaaaacaaaaaaaacgataGTAAGAGTAATATTTCCCTCCCCTTAATGTTTCGCTCCAATGTGCTCTTAGCAGGAATAGGAATGATTCAATAACGAATTACTGAGACTTTCCATTTTccactggcaaaaaaaaaaaaaaagaaaagacaatacCTCAGAATATTAATCTGGCTTGTTATTGCTCTACTCTTGCAATTTTAATCACAAGCTATAGAAGAAGCTTTGCTGCTATATAGGATATAACGAATAGATAGCGTCGGTGTTCTATGTAATGCCATTGTGACGTCACTGGCGATGTCATACACAGAAATGCAGTCCGTTCCCTCTCGCGCGGCATTGGCCGATCGTCGCCGCGGAAACACAGAATGTGAAAACGCGCGTGCATGTTTGTGGCTGTACATCATTTGCATGCAGTGTAAAGGTTACCAGCACAtataagaaagagaaaaaaaaaacacaaacaaaacacgaTGCATATTAACGATAAACAGAGGAATTTATGTAGCATGAGGCGAAAAAACGGTCAGACACTTAGATATATAAGATAATCAATACTAATaacgaaaggaaaaaaaaaaaaatcggtgtACAATTCTTCGTAAAAACCTTTGCATGCGTTGTTGTGATGATTCCTTTACGAACTTATTACGAGAGAAGTGACGTTAGTTTTTAGAGTAGTGAGTTCTGCCATTTTGTAACTTGATAATTAGTCAAGAGACGGTGTGCTGTCCTGTGGTTTTCGTGTTTCGTCTTCGTGCCGTGTGAGTCTAGTTATGAATTGAGGTTTCAGTTCTACGATCTAGAGAATCGTCTCTCGACATTTAACCTTTGCCCTTCCTGAACACCCCTAAATGCCACCCCTCATATCGCGATAGAGCGCAGGACTTTGATATGTGTAGTTCGTAGGAATTCGCGAAGGAATCGTACCCGTGGTCGTTGTCTGTGCATGGTGGGCGGAGCCTAGCACCGCGTTTCGTAGTTTAATCTCCGGACGAAATCTATCGGTAAGAACAGACCCAGagaaaagagaggagagaggtgTCACGAAAGGAAGCCCGTCGCGAATATTTTTGTAGCAGTTGCGTTTTCGCTCGGATCGGTCTTATGGACAATCTCAACAGAAGCAATGGCGTCGCGACCAGTAGTTcgctctttctgtctgttctgtCGTTCTGTTTGCACTCTGTATATTCTTGAGTTCCCGGGTTTTGGTGCCCTTGTCGCACTGCGGAGCCCGTGTACGTGATTTAACCCTTCAAGTGTCAACGGTGAGCCGAGTTTGCGTGTTTATTTATTgcgtatttgtgtgtatttatttgtcgACGCGTTCCCAGACTCTCGAGGACACGTGATGCACTACCTTTCCgttttctctcctctcttttctcttctcagAGAACCAATCCCTCTTTTCCCGTCGTTTGGAGTCGAACGCAAAACGGTCTCTTTGATTTTGTATCacatcacctttttttttttttttttgtatgctgtTCGGTTGTGGAAGAATTGcgacctttttttttaagtctattggataatttaaatatctttatttttttgcatagtaACTTATTTGATCGTGTAAGACGCCGGACCCAGATTCTATTTAAGCGATGGCGGCGATCTGCCGCGTACTCGGGAGTAGGTAGCGGAGGCGTTCCCGGGAGCTAAACAAGATGGCCGCTGCATCGTCATCGTCGTCTTTAAGTCTGTGACGAGCAGCGCGCTCTACTTTCCGTGTTCAACACTGTTGCTTCGTACGTGTATGTGTGGGTTTTCGTTGTCGTCGTGGTCGTTTtgcaaaaatcatatttatttgactatttttgtAGACAGATAactatttgatttaaattgtatttttctatttcctCTCTCACTTGATTTGCCCACGTATTTATGGttacgttcacacacacacacagcgtcgCGCTGGAAGACGCAAAAGGCCGTTTCTTGAATCATCCGTGCAgcgtgtgtgagcgagtgtatGTATACGAatctatttatgtattattgCTTAGCACACATCGATTTGATTACTATTTAAGTTGGTCGTGTATTTAATTTGAAGGAAGGAAGCATTGAGGGTTCTACTATGTTCATGGAAAACACTTGAGACTCTCCCTGGTTAGATGGAGGGGTATCAGCCCTCCCCTCACTGATACTCAGAAACTTGaatataacacattttgaaAGGCTTACTAACCTCGAATCTGTGTTGTGACGTGCAATACTGTTTCTaatgtttgtataaaaaaagtgaGAATTGCAGTGTATACCTTtttaatgcagatttatttttttcattgcatattTTGCAAATTTCTGATTCACAGTGTCATTTTTTACTGTCAGAAAAGATGAAACCCCTTTTTTTCATTGCAACTATTTTTAAATCCAGATATCTTTGTACTGATGTAAATGATTGTAGTTATTTTGGATAGTGTTTTGCTAACAAAAGGAGAAactttttcatgcatatttctatttctttttcgttcgttggtttgtttttttgtttctcgttttggtttttttattttactctaatAGTAGCAAAATATTTGGgataatttttcatattatatgtcattaatattattttgtatttttatgtggaaagatatgaatatataattttatgatgCTAActgctaaaatattatttcaatttgaattatttttaaagctaaaatctTTGTAATATTGTTAATGTTCTAGTTTCTAAATCAAGTTTGTGTATAGATTCACACAAGTGGTTTATGAAGTGTTCAGACTGTAATTATTACTGAATGGCTCTTTGATATGCAAACTGAATATCATGTTGTTccttattttgatttgttttgtatttaaatgggGTGTTGATTacaatctttttctttcatttcctgAATAAAGACCCATTCTGTTCAGACACAA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K02602 CPEB, ORB; cytoplasmic polyadenylation element-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247848.1 lncRNA downstream 143582 2099254 ~ 2102158 (-) False LOC122328884
XR_006247849.1 lncRNA downstream 143611 2101524 ~ 2102129 (-) True LOC122328884
TU228334 lncRNA downstream 148732 2096784 ~ 2097008 (-) True G154200
TU228327 lncRNA downstream 149825 2092748 ~ 2095915 (-) True G154195
TU228325 lncRNA downstream 166244 2077564 ~ 2079496 (-) True G154194
TU228403 lncRNA upstream 19360 2288267 ~ 2288503 (-) True G154245
TU228405 lncRNA upstream 31348 2300255 ~ 2300566 (-) True G154246
TU228409 lncRNA upstream 32703 2301610 ~ 2304195 (-) False G154247
TU228410 lncRNA upstream 32703 2301610 ~ 2304408 (-) True G154247
TU228406 lncRNA upstream 32950 2301857 ~ 2304408 (-) False G154247
XM_043224930.1 mRNA downstream 5089 2234831 ~ 2240651 (-) True LOC122328872
XM_043224819.1 mRNA downstream 12152 2214388 ~ 2233588 (-) False cc2d2a
XM_043224856.1 mRNA upstream 195279 2464186 ~ 2479525 (-) True LOC122328840
XM_043224855.1 mRNA upstream 195279 2464186 ~ 2479521 (-) False LOC122328840
XM_043224929.1 mRNA upstream 432908 2701815 ~ 2714305 (-) True epm2a
XM_043224880.1 mRNA upstream 445590 2714497 ~ 2720029 (-) True fbxo30b
XM_043224926.1 mRNA upstream 454934 2723841 ~ 2726856 (-) True LOC122328868
XR_006247837.1 other downstream 128857 2102710 ~ 2116883 (-) False LOC122328833
TU228042 other downstream 733411 1507810 ~ 1512329 (-) False smim29
XR_006247839.1 other upstream 502500 2771407 ~ 2782853 (-) False LOC122328838
XR_006247842.1 other upstream 518389 2787296 ~ 2798533 (-) True LOC122328849
TU228731 other upstream 656141 2925048 ~ 2957272 (-) True G154446
TU228725 other upstream 656622 2925529 ~ 2951628 (-) True G154445
TU228726 other upstream 656622 2925529 ~ 2942569 (-) False G154445

Expression Profile