RNA id: XM_043224929.1


Basic Information

Item Value
RNA id XM_043224929.1
length 2287
RNA type mRNA
GC content 0.46
exon number 4
gene id epm2a
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 2701815 ~ 2714305 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCCTTTCTGATCCACGCAGCGCCCCCTGGCGGACGCGTTTTTTCCTCCCCTCAGGAAACTAACAGTCGACGCGTAACGCTACGAACCGTCCCGTATAAAGCGAGGTCTCTTTACAACCCTATAAAGCGCACAGTTGTCCCCTCACAGCCACTGTATTCTCAATAAATGTCAACAGCACTGCGTGTATTTTTAGCGCGGCCATTGATAATGTCGGTGAGCGAATGCGCATAGAGGTCGTTCCCGGTTACAGAACGCCCGCGCGTTTTACACGGCATGCCCGTGTTCAGGTTTGGTGTCATTCTGACCCCAGAGCGTTTGGACATCGAGGTGTTCGTGCTGGGCTCCCGGCCGGAGATGGGTCACTGGGATCCGGACCGAGCCGTGAAGATGAGCCCGAGCCGCCCGGTTCTGTCCACCCGCGAGCCGCGTCTGTGGACCGGAGACGTGCGTCTGTCTGAGGCGCCCACGGACACGCTGTGGTTTAAGTTCATAAAGCGTGTCGACGGAGACTTCATTTGGGAAGGCAGTGGGCCACATCATGACCGACACTGTGTGTATGACGACAGTAACATGGTGGACGGGGTGCACTGCCATCCCATTGGTCACTGGATTGAAGAGACGGGCCACACAGATGAGATGAAGCACACTACCAACTTTTACTTCAGCGTAGCGGGACAGCAAGCCATCCACTTCTCTCAGGTGCTGCCACGTGTCTGGTTGGGCAGCTGCCCTCGACGGCTCGAACATGTAACAATAAAACTGAAGCAGGAACTGGGTGTTACAGCGGTGATGAACTTTCAGACAGAGTTGGACGTCATAAACAACTCCCACGGCTGCCGGCGTGACCTCAGCCAGCCCATGATCCCCGAGACCATGACGAACCTGTACAAAGACTGTGGCCTTTCGTACATCTGGATCCCCACTCCAGACATGAGCACGGACGGACGCACACGGATGCTGCCGCAGGCCGTGTTCTTGCTCTACGGACTGCTGGAGAACGGTCACACAGTGTACGTTCACTGTAACGCAGGAGTGGGTCGCTCCACCGCCGCCGTGTGCGGGCTCCTGATGTACGTGTTGGGCTGGGGACTCAGGAAAGTGCAGTACTACCTCACTTCCAGAAGGGCAGCGGTCTATATAGACGAGGAAGCGCTGGTGAGAGCCCAAAATGACTTTCGTATGAAGTTCGGACGCCTCCGGATGTCTGCCTGCAACGCGGAGACATGAAAACAGCGCCCTCTTCTGGACGGGAGAACAAAGAGACTTTAATAACGGCAAAAACACTACTGTCGCACATCGATCCAGTGTAACCACATGAGTGTATTGCTCTGTTTATCCTTTGAAATGTTTTCCCAGGCTCGCCTGGTTATTGTTCATTCATCTTGACATGGTCGTCATTTAAAAAGGCACCTTGAGGCAGCAGTCGCCTCAGACTGCTAATGTAACGGTTATTATTCATATATCTGCCCCTTTTCTCCTCTAACATGcctctttcattcatttacgaATGTAACTATATTCTTGTTATATATTCTTGTCATAGCAATTTCCCTGCCCTTGAAATAAGCTGCCATAATGAAAAGCTCTTTCCACTTGACCTTTCAATAAATATAGACTAGTGTCACCACATTAGGAGACTTtgtgtgaaaaatgaaaagatttgctccagaaaataaaagaacaaaaaaaggttcattGGGTTACATAGAAGGTACCATTAATGAACCTCAAGTCAAATACAGGAATAAATAGTAGAGTGTAAGCacaagagggaaaaaagagaaatatcgATACAGGTTTTTCATCCTTGTCCAGGAAAatccaaaataatcatttatacaaataacagtaacactaGGCCTGACAtttacttaaataaatataatcaaattcaatcgaattgtaataataatacaaaaaacacaaattatagATACACTAGcatgcaaacatttcaaaattattattttgatgtaacattactttattattattattattattattatcagcgtAGAATTTATTCGAAATATTTTGTGCCttacaggaatagttcaaccaaacaTGAATATTCCGTCATCATTTACgcatccattttttttgttctgccaaCACAAAGGAAAAcgctgtaaaaaaacatttccttacaatttacagtaaaaaaaaaaagcagccgtGGTTGCCAGAATTCAACcgtaaaaaatacggtaacagcATTTTAGGTTTTGcggttttattgtaatttaacgaactgatgtaatgttaataaaccaacctattaaagca

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function
GO:2001070 starch binding molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K14165 K14165; atypical dual specificity phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228523 lncRNA downstream 41954 2659550 ~ 2659861 (-) True G154338
TU228518 lncRNA downstream 45233 2648154 ~ 2656582 (-) True G154336
TU228461 lncRNA downstream 118728 2488745 ~ 2583087 (-) True G154288
TU228446 lncRNA downstream 220942 2480607 ~ 2480873 (-) True G154278
TU228445 lncRNA downstream 221561 2479885 ~ 2480254 (-) True G154277
TU228613 lncRNA upstream 107015 2821320 ~ 2823072 (-) True G154391
TU228616 lncRNA upstream 107709 2822014 ~ 2823072 (-) False G154391
TU228630 lncRNA upstream 133053 2847358 ~ 2847619 (-) True G154404
TU228631 lncRNA upstream 137009 2851314 ~ 2851524 (-) True G154405
TU228633 lncRNA upstream 138314 2852619 ~ 2853230 (-) True G154407
XM_043224856.1 mRNA downstream 222290 2464186 ~ 2479525 (-) True LOC122328840
XM_043224855.1 mRNA downstream 222294 2464186 ~ 2479521 (-) False LOC122328840
XM_043224899.1 mRNA downstream 432908 2245740 ~ 2268907 (-) False cpeb2
XM_043224898.1 mRNA downstream 432908 2245740 ~ 2268907 (-) False cpeb2
XM_043224897.1 mRNA downstream 432908 2245740 ~ 2268907 (-) False cpeb2
XM_043224880.1 mRNA upstream 192 2714497 ~ 2720029 (-) True fbxo30b
XM_043224926.1 mRNA upstream 9536 2723841 ~ 2726856 (-) True LOC122328868
XM_043225365.1 mRNA upstream 12525 2726830 ~ 2729496 (-) True LOC122329165
XM_043225366.1 mRNA upstream 16517 2730822 ~ 2759122 (-) True LOC122329166
XM_043224852.1 mRNA upstream 55177 2769482 ~ 2839047 (-) False LOC122328838
XR_006247837.1 other downstream 584932 2102710 ~ 2116883 (-) False LOC122328833
TU228042 other downstream 1189486 1507810 ~ 1512329 (-) False smim29
XR_006247839.1 other upstream 57102 2771407 ~ 2782853 (-) False LOC122328838
XR_006247842.1 other upstream 72991 2787296 ~ 2798533 (-) True LOC122328849
TU228731 other upstream 210743 2925048 ~ 2957272 (-) True G154446
TU228725 other upstream 211224 2925529 ~ 2951628 (-) True G154445
TU228726 other upstream 211224 2925529 ~ 2942569 (-) False G154445

Expression Profile