RNA id: XM_043224933.1


Basic Information

Item Value
RNA id XM_043224933.1
length 3175
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC122328874
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 3102068 ~ 3106940 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttagaaatcttggccaACTGAACATGTATGGCATTCAATACTTAGTTGGGGCTCCTTTTGCCTGAAATACTATTATTAGGTGTTATGAGAGTCCAGGCtgctctgatagtggccttcGGCTCTTCTGCATTGTTAGGTCTTATCACATCTTCCTCTTCACCATACCCCATAGATTACCATAGTCCTCAAACCAGGTActggtagctttggcactgtgtgcaggtgccaagtcctggtagaaaatgaaatctgcatctccataaGGTTGGTCAGCAGCAAAACGTCCTGGTATACGGCTGCGTTGACcttggacctcagaaaacacagtggcACAACACCGGCAAATGACATGaaccccaaaccatcactgactgtaGAAGCACACCGGACCTCAAGCAACGTTCTgtgcctctcctctcttcctccagactctgatttccaaaggaaatgcaacattttcttTCATCAGAGTACATAACTTTGGCCCAGTCAGCAGCAGCCCAGACCTTTTTGTCTTCAGCCCAGATGAGAAGCTTCTGACACTGTCTGTTCAAGAGTGTCTTGACACAAGGAATGTGACGGCTGAAACCCATGTGTTGCATACATCTGTGTGTAGCGCTTCTTCaagcactgactccagctgTAGTCCACTCGTTTTGAATCTCCCCTACATCGAACGGGTTTCGTTTCACAATCCTCTCCAGGGTTTCACATCCCTATTGcttctacatttttttctaccacatcttttccttcccttctCCTCTCTATTAAAGAGCTCTGTGAACAGCAAGcctcttttgcaatgaccttttgtgtcttgccctccttGTGCAAGGTGTCAATGGTCGTCTTTCGGACGactgtcaagtcagcagtcttccccatgattgacTACAGAACTAGACcgagagaccatttaaaggccttcgcgggtgttttgagttaatcaGCTGATTGGAGTGTGGcatcaggtgtcttcaatattcAACCTTTTCGcaatattctaattttctgagatactgaatttagGATTTTCactagttgtcagttataatcatcaaaatgacaagaaataaacatttgaaatatatcagtatgtgtgtaatgaatggaattagtgaaataaatcaactttttgatgatgttctaattatatgaccagcacctgtatatGTGTTTCAACATAAACCATGAGTTTCACTTTGCGgactctctctccatctctctctctctcagctttAATGTAATTTAGTAGCATTAAACCAAAGAGCCATCCCTGACATGATGCAGCTTCGAAAGCCCCGATGAAATCCATTTGACAAAACTCCAGAGACTCTTTGCTCATGGATGGggtttaataattcattcagcGCAGTTTATTCTACAGATATATCTTCTTTCTCATGCTCAAGTCCGTTGTGTTATTGTTTTCCAGTGCTCTTTATACCCTGCAGATTCATCTGCGCAGCATTGTTATCTTGTCGTGGCACAGTTTTGGTCCTAACAGCCAAACTATTGGTCGACTGTGGCACGTGTTCATCTCAGATCGGACCGAAGTGTCAGGAGACGGGGTGCTGGAATCACTCGAGGTCTGGTATGATTTTTCTCCATGTCCGTAAGCTTTCGTTTCCATCCGTGATTGCGTTCTGCAGAATGAGCGAAGCCGTGGCGAGCGGGGTGAGAAGGTTGAGCACCATCTCGGAGCAGGACGCGGATGCTGGAGCGGAGCCCGTGTCCCTCGGGTCCTCGGGGGACGGCGAGTGGGCAGGATCCAGTGCTTCGCTCTGCTCGCGGGGAAAACCCAGCGTCCAGAGCAGCACCTTCACCTCCTTTGAGTCCTATCAGCCTGACGCTGCAGATGACTGCGCCTCCATCCTGCTGGCTTGTCTCTACTGCCGCTTCTGTGACGTGATGGCCATGCTTCCCGACGCTTGTGAGCGAGCGCTAGGCCGCTGCTTCCCCTCGTACAGGTATTACAACACCTCGGATGAGCCGTCCAAAGGAAAAGACTGGTGCGGCTGCAACGTGGATTTTGACTGTGGTTTCATGAACTCCTGTCAGGAGGCCAGCGAGCTGATCGAGCTGGCCATGGAGATATCTGAGGTCTGTTACCGCTGAGAGCCCCGAAATCTTGCATCCCAGATTTTTGCATGTTGAAAAATACATAAGGCCAATGACGTTTAGACACGGCCTCCGACAGGTTCGACCGTTAAAAAAATTGGTTCGATTTTCAgcattttgggctttttttgcAAGCGTTTTCATAAAGGATGACGAACGTGAAAAGTATGAAAAGCGTGTGCAGGGACCTTTACAGCTATTCGTTGTCACTTAAGACATTTGTGGTTTCACGCGGGAGAAACCAGGGTAAATGTCACTTCTTGTTTTAGGCGACAAAATAAAGCATGACCCTGCATTTTTTTAGGATGAGGTCCTCATTTAAAGGAAGTAGGGTGAATATATTTGCAGTACAATTTATTTTGCAtccaaagttgaattttcataCAAAATGATGACTTTACTGACGCTCTCATATTCCCGTACGTGACGGCTGAACCAAAATGTGAACGTTGGGCTCATCTGTTatgtaaagcatgaaaaatCATCAGTGTGGGTAAATCGAGCCAGTGGCCACCTGTGTGATGCATAATTGATTGTAACAAAgtaaaaagctttaaatgtcTTTCTGTCTTGTGATTTGCTTAAGACCGTTAAAGGTCTGAATATGGTACAAAAAAACCAGAAATCAGTTTGCATTTAgatacatttagttttatagttttgaattagtttttggTCAAATGCCTGTAACACTTTACAACTCCTagattataaataaactatgaAAGAGTTGTCGAAGCTTAATGCTGGTGATGCTGAAGTTGGTGTGCTTGAACTTTTTACTTCTAGTGTTCGTATTTAGGCTttaaaattcaataataattctGTAGCTCTGAAGATTATCTGGTGACGCTTAGAATACTGTtccttaatattaaataactgcGAGACAAATTACTAATGCAGTATTAATGTTTTGGTAGCTACTGTTAACTCcaattaacaaattattaacTGACTTGAATGTGTTAgctttttcttcacaaaaatGGCAAACAGTTATAATGTTGTCATGTTTTCTATGCAAATAACgcataaataattctaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228845 lncRNA downstream 88887 3011419 ~ 3013181 (-) True G154525
TU228839 lncRNA downstream 92590 3006483 ~ 3009478 (-) True G154519
TU228837 lncRNA downstream 92590 3007921 ~ 3009478 (-) False G154519
TU228838 lncRNA downstream 92590 3007921 ~ 3009478 (-) False G154519
TU228840 lncRNA downstream 104104 2996765 ~ 2997964 (-) True G154520
TU228997 lncRNA upstream 395335 3502275 ~ 3518117 (-) False tspan2b
TU229031 lncRNA upstream 525419 3632359 ~ 3633333 (-) True G154663
TU229039 lncRNA upstream 548346 3655286 ~ 3655596 (-) True G154671
TU229040 lncRNA upstream 549348 3656288 ~ 3656543 (-) True G154672
TU229056 lncRNA upstream 565739 3672679 ~ 3673581 (-) True G154684
XM_043224925.1 mRNA downstream 2180 3095063 ~ 3099888 (-) True LOC122328867
XM_043224864.1 mRNA downstream 39996 3014616 ~ 3062072 (-) False frmd4bb
XM_043224867.1 mRNA downstream 44684 3014616 ~ 3057384 (-) False frmd4bb
XM_043224866.1 mRNA downstream 44684 3014616 ~ 3057384 (-) False frmd4bb
XM_043224865.1 mRNA downstream 44684 3014616 ~ 3057384 (-) False frmd4bb
XM_043224932.1 mRNA upstream 67 3107007 ~ 3113429 (-) True tmem106c
XM_043224935.1 mRNA upstream 7752 3114692 ~ 3120743 (-) False LOC122328875
XM_043224934.1 mRNA upstream 7752 3114692 ~ 3120743 (-) True LOC122328875
XM_043224916.1 mRNA upstream 13922 3120862 ~ 3128222 (-) False LOC122328862
XM_043224917.1 mRNA upstream 13922 3120862 ~ 3124663 (-) False LOC122328862
TU228731 other downstream 144796 2925048 ~ 2957272 (-) True G154446
TU228725 other downstream 150440 2925529 ~ 2951628 (-) True G154445
TU228728 other downstream 150440 2942238 ~ 2951628 (-) False G154445
TU228726 other downstream 159499 2925529 ~ 2942569 (-) False G154445
XR_006247842.1 other downstream 303535 2787296 ~ 2798533 (-) True LOC122328849
XR_006247838.1 other upstream 329839 3436779 ~ 3445964 (-) False LOC122328836
XR_006247897.1 other upstream 788026 3894966 ~ 3905892 (-) False lad1
XR_006247892.1 other upstream 1066974 4173914 ~ 4194998 (-) True LOC122329268
XR_006247893.1 other upstream 1066974 4173914 ~ 4194996 (-) False LOC122329268
TU229703 other upstream 1724878 4831818 ~ 4834520 (-) False LOC122329181

Expression Profile