RNA id: XM_043224950.1


Basic Information

Item Value
RNA id XM_043224950.1
length 4556
RNA type mRNA
GC content 0.46
exon number 22
gene id phf8
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 15966421 ~ 15975709 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGTGGTCGCTGCACGGGCGGATTGGGATGGATTTATAGCACGGAAAATCGCTGCGTTATGAATTTCATAAAATCTTTGCTTTTCAGCTGTGGACTGTATTTTTTCGAGATCTTGCCAGATTTGTTTATTCACTCTCCCCTGTTAAATACGTAAGAACGGAAGAAGTGTGCGGTTTTTAGAAAACATCTTGTTGTTTGTAAAGCAGGCCGCTGAGCCCTCGGATTTTCCTAACATTGTGTCCGGCATGGTGCGCTCGGCCCACGGGACACTCGCGGCATTTGACACTCGGTGCCGAACCATGGTATGCACCTGACTGCAGTGGTTGTAGTAGCAACACATTTCTCATCTACGATTGACTGAGAGCTGTTGTCACTGCCAACATACTTCTATACTCTCTACTGTGAATACAACAGACTTAACAGCATTGCAAGCTGATTGGTGGACTACTCTAAAGTGAAGCCGACTCTCCATAAAAGCGACTAAGTGAAGTGGTCCCCAACGGAAGCAATACCATATTACAAAACTTTTGTGCTACATTGACATATTTGGCCAGAGACTTTAGAATGGCATCTGTTCCCGTTTACTGCCTGTGCCGCCTCCCTTACGATGTCACCCGGTTCATGATTGAATGTGATGTCTGTCAGGACTGGTTTCATGGCAGTTGTGTTGGTGTGGAAGAAGACAAAGCGGCAGATATTGACCTGTATCACTGTCCTAACTGTCAGGTGACACATGGACCCTCCGTCATGCGCAAACGTCGAGGGGCTTTTAAGCACTCTGATGCAGGAGTGGGCAGAGAATCAGGACGACCTGTGAAGACGGGCAGCGCTCAGTTTGTCAGGGAGCTACGCAGCCGCACTTTTCCCAGtgCTGATGAAGTCCTGCTGAAGCCAACCGGGGCCCAGTTAACGGTTGAGTTTCTAGAGGAGCGCTCCTTCAGTGTCCCAGTCCTGGTGCTCAGGAAAGATGGTCTGGGCATGAATCTGCCCCCGTCATCTTTCTCTGTATCGGATGTAGAGCATTATATTGGTGCTGAAAAGGAAATTGATGTGATTGATGTCAACCGCCAAGCAGACCTGAAGATGAAGCTGGGAGAGTTTGTCGAATACTACAACAGCCCAAACAGAGACAGAGTACTCAACGTGATCAGCTTAGAGTTCTCAGACACCAGGTTGTCAAACCTAGTTGAGACACCAAAAATCGTGAGGAAGCTGTCATGGGTGGAGAACCTCTGGCCTGAGGAGTCTGTTTTTGAGAGGCCTAATGTGCAGAAATACTGCCTGATGGGAGTGAAGGACAGTTACACAGACTTTCACATCGACTTTGGTGGAACCTCTGTGTGGTACCATGTACTACGGGGCGAGAAGATCTTTTACCTCATTCGTCCCACTGCTGCTAACCTGTCACTTTTTGAGCGCTGGAGTTCATCCACCAATCAGAATGAGCTGTTTTTTGGGGACCAGGTAGACATGTGCTACAAATGTTCACTAAAGCAAGGAAACACTCTCTTCATCCCAACAGGATGGATTCATGCTGTTTTGACCCCTGTGGACTGTTTGGCATTTGGAGGAAATTTTCTACACAGCCTCAACATTGACATGCAGCTTCGagcATATGAAATAGAAAAGCGACTAAGCACAGCAGACTTGTTCAGGTTTCCAAACTTTGAGACTGTGTGCTGGTATGTTGGCAAGCATCTGCTGGACACCTTCAGAGGTCTAAGAGAGAATCGACGGCATCCTGCCACATACTTGGTCCACGGAGCTAAAGCTCTCAACAATGCTTTTCGCGGCTGGACACGAAAGGAATCTCTGGCTGAACATGAACATGAGATACCAGAGACTATAAAGACCCAGCAGTTAGTGAAAGATCTGGCAAAAGAGATTCGCCTGGTTGAGGATATCTTCCAGCAGAACATCGGCAGGAGTGGGACACCATTCGGTGGCTCTCAGGGTCTACCCTCTCCACACCCCAAAGCTCCATTAAACACAGCCCTTACTTTTGGCCAGCACCCTGGTAAAAAGAGAGGCCCCAAGTCGAAGGATGGATTTGGAGGAGGGGGTGTTGGTCCTCCAGGAGCTAAGAAGAAGATCCAAAAAGGCAAAGAGATAAAAACAGAAGCCGGAGAGCTGGACCTGCTGGAGATTCATACTAAACACACTCTCAAGAAGTTCCAGCCAGGGTGCAAAGTAAAAAAGAGCAAGCTTGAGCTGCCTGATGACTGTCTAGATGACTTTGAAGAGAAGATCAACAAGAGCAAGCTTAAGCTTGTGCTGACTAATGGAAAAATACAAGGGAAGAAGGGTCGTGCTGGCAGTGCAAATGGAGCTGGAAGTTCACTTCAACAGTTCCAGCCCCACATGGCTACATTGTCAGACTTTGATTCAGAAGACGAGCTTCAGATTGACGAAACTCCTCCTCCTCGCCGCAGACCATCTTTACCCAGCAAGAAAAAATTAGCTGGTCTACCAAGGAAACTACCTCGGGCCAAACCATGCAGTGACCCTCACAGAATCCGTGAGCCGGGCGAAGTGGACTTTGATATTGAAGAGGATTACACCACAGATGAGGAGATGCTTACAGTGCAGGGTGTGAAAGGCGGAGCAGGTGGGATTTTAGACTTGCTCAAGGCAAGCAAACAGGTGGCGGGTCTTGATTCTGCACTGAGTGAGGAAGCACCGGCCTCCCCCAGCACTCGTGATGCTATCCAGGGCATGCTCTCGATGGCCAACCCCCCATCTTCCTCATCCtcgtcctcctcatcctctccTCTATCCATGTCCGGGGGAGGTGAGATGCTGGGGCTTATCAAGGAGAAAGGAGGCAGAGCTGGGTGGATAAGTGGAGTCAAGAAAAGTGAGAAAAAGACCACATTTCAGAGGCCAGGAAAACGGCCCATTAAACGTCCAGCACGGCACCTCAGCGATGAAGAAAGCTTGGATGAACAGGAGACCCTGGGTACTTGTTTTAAAGATTCTGATTACGTGTATCCATCACTAGAATCTGACGAGGAGGATCACGTAAgcaaatctaaaatgaaaagaaagcgaAACTGGGATGATACACCCTGGAGTCCTAAAGCCCGTGTGACCCCTACGTTGCCCAAGCAGGAGCGACCGGTGAGAGAGGGTGCAAGGGTGGCATCTGTAGAAACTGGGCTTGCAGCTGCTGCTGCTAAACTGGCACAACAGCAGAAAACCATAACCAAGAGGAAATACACCAAGAAGAAGGTCTCTCAAGATAAAGTACATTCTGCAGCTGCCCAACTCCAGCGCCAACCGGACTCTGCACCCGTGTCTCCTCCTCTGCCCTCCGAGCCTCCAGTGGACTGCATAGTCGAGGAGAGGAGAGTGGAGGTGTACTCAGCCAGCCTCCTGGACCACGAGTACACAGCAGGACCAGGCCCGTTCAGCCCAGGGGGCCCAAGAGGAAGTGGTGCCATGGCCCCTGGCGTGTTCCTGACTTCAAGACGCCCCTCACTCTCTCCCCAAAACAGCAGCAGCTACTCTCCCTCTGCCCCTTCACCCGGAGGGCTGGCTACTTCAGCGTCGGCAGTAGCATGTCAAGGAAAACGTCCAAAGAAAGGACTTGCTACGGCTAAACAGAGACTGGGAAAGATCCTGAAAATACATCGAAACGGCAAGCTTCTCCTGTAGTTTAATAAAATGGAGAGGAGACTGCAGGGAACAATAGAGGAGGAGAAAACGAATAAGGACGGGAGAGGACCTGAGTGATTTTGGCGTTAATTTATGTGGCTGTTTTATGGTTAATGTTCTGCTAGCCTGGTTTTTATTTGCTTCATCGGGACGAAAAAATTGAAAAGAACTGTAACTTGCTGTGATAAATTCGATTGAAATCCATTTAGCATGGTGTTTTAGAATAGAAATTCTATTGGAAAAACAAATAGAGCTAAACAGACGGATGCATTAATGGAGTGATGACTGTATCGCTAAAGTTGTTTCCATCATTTTCAGTGCTCCACCTCTGAAAAACAAACTGCGTACAAGTACACTCCTCTTAAGCCCTGTTTGTTTCATAGTTATTtgagttttagttttaacattgtatatttctaaaaaaaaaaaaaaaaaaaaaaaaaataaaaagaaatgaaaaaaatttaatgctGAGGAGCACTTGATGTTAGATCAAATTGCCTAAAGCCattgcaaacaaaaaatgacattgtttagaagatctctgactgttttatttgaaaaaccaACTTTTCAAAAAGTAGTATTGAGGTTGTTGTTTGGCCTGAATTGTCCCAGAAATGAGAGGAGATCCAATTCTTTAGTCATTACCTCAGcaatttgaaaatgtcacacTCATGGCTATTTGTCCTGGTCCAATCTCCTCCTGAAGCCATGcatattatttgtttacatgCTTCATTTAGTATCTGTTCATATCAATATGTTTTATACCATAGAAGGCAATTTGATACACAATTGACTGTAATTGCTGTAGATGAAGTCCTGTAGTAATGTCTCTTTgcttgttaaaatgttttttttacagtagtgtactaacacttttttttttttttttt

Function

GO:

id name namespace
GO:0007420 brain development biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0043523 regulation of neuron apoptotic process biological_process
GO:0005634 nucleus cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234357 lncRNA downstream 658 15964753 ~ 15965763 (-) True G158227
TU234328 lncRNA downstream 153494 15812281 ~ 15812927 (-) True G158208
TU234308 lncRNA downstream 177090 15728154 ~ 15789331 (-) True G158198
XR_006247888.1 lncRNA downstream 249177 15699771 ~ 15717244 (-) False LOC122329227
XR_006247887.1 lncRNA downstream 249177 15699771 ~ 15717244 (-) False LOC122329227
TU234368 lncRNA upstream 32397 16008106 ~ 16008915 (-) False G158231
TU234426 lncRNA upstream 125916 16101625 ~ 16102214 (-) True G158282
TU234428 lncRNA upstream 142172 16117881 ~ 16118214 (-) True G158284
TU234492 lncRNA upstream 271307 16247016 ~ 16247293 (-) True G158333
TU234496 lncRNA upstream 379660 16355369 ~ 16358705 (-) True G158336
XM_043224058.1 mRNA downstream 2002 15957896 ~ 15964419 (-) True LOC122328386
XM_043224059.1 mRNA downstream 2017 15957896 ~ 15964404 (-) False LOC122328386
XM_043224061.1 mRNA downstream 2032 15957896 ~ 15964389 (-) False LOC122328386
XM_043224060.1 mRNA downstream 2033 15957896 ~ 15964388 (-) False LOC122328386
XM_043225558.1 mRNA downstream 9023 15949082 ~ 15957398 (-) False pfkma
XM_043224109.1 mRNA upstream 2907 15978616 ~ 15983169 (-) True arf3a
XM_043224108.1 mRNA upstream 2907 15978616 ~ 15982975 (-) False arf3a
XM_043224196.1 mRNA upstream 9196 15984905 ~ 15991565 (-) True wnt10b
XM_043225433.1 mRNA upstream 34011 16009720 ~ 16019647 (-) False ikzf4
XM_043225432.1 mRNA upstream 34011 16009720 ~ 16019647 (-) False ikzf4
TU234273 other downstream 249171 15699269 ~ 15717250 (-) False LOC122329227
TU234274 other downstream 249171 15699269 ~ 15717250 (-) False LOC122329227
XR_006247853.1 other downstream 492044 15347417 ~ 15474377 (-) False magi3a
TU233895 other downstream 1376828 14581094 ~ 14589593 (-) True fitm2
TU233846 other downstream 1635637 14326966 ~ 14330784 (-) True G157909
TU234366 other upstream 32397 16008106 ~ 16008915 (-) True G158231
TU234433 other upstream 168124 16143833 ~ 16169834 (-) True G158288
TU234490 other upstream 265101 16240810 ~ 16243395 (-) True tac3a
TU234495 other upstream 381943 16357652 ~ 16358705 (-) False G158336
TU234864 other upstream 1200943 17176652 ~ 17179779 (-) False slc48a1a

Expression Profile