RNA id: XM_043224953.1


Basic Information

Item Value
RNA id XM_043224953.1
length 1483
RNA type mRNA
GC content 0.42
exon number 10
gene id fam3a
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 14293872 ~ 14298117 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGTCATCGGGATTGGTGTATTGGCAACAGATGTACGCTTGTGGAGGACACTGAACAAGGATATCTCGTTATTACGGAGCGCTCTATAAATGTTAGTTTTATTGGATGCTGACTAATTCAGTCGACACTGCTTTTAAGATGACCGTGCTGCGTTGAACGAGATTTAATTTGTCGTGACAGAGTGTTAAAGCACAAGGGGCAATCTGTTTCACGAACCTGCTGCACGGGATTACTGCAGATTTTAGtttgtaCTCCACAAACAGAATCTTATCACATTGGCCACTTCCTGAGCAGATTTTGACATCTGTTGACCATGAGGTTTGCAGTGGCGCTCCGTGCTGTTGCTTTGGTTCTTCTTTTGGGCTTTACCTGGCTTCTAGCAAATTCTATGCTAGGAGGGGATGGGAACTCCTTGATACGGATGCTGTTTAGTGGTGGACAAGAAGAGCCCACTCCAGAACCTCGACCACGCAAGTACAAATGTGGCCTGTCTGCCCCGTGTCCCCCCAAACATCTCGCCTTCCGGCTGACCTCTGGGGCTGCCAACGTCATCGGCCCCAAAATCTGTCTGGAAGATAAAATTCTTGTCAGCAGTGCTAAAAACAATGTTGGCAGGGGGCTCAATATTGCCTTAGTAAATGGGGTTAATGGAGATGTCTTGGAAATAAGAGCATTTGATATGTGGGCAGGAGAGGTTTCAGAGCTGCTGAAGTTTCTTCGTCCTCTCCATGAAGGAACGCTAGTATTTGTTACTTCTTTTGATGACCCGGCCACCAAGTTAAATGATGAGGCTCGGCGGCTGTTTGAAGAGCTGGGGAGCACAGCAGCGAAAGAACTGAGCTTCAGGGATAGCTGGGTGTTTGTTGGAGCCAAAGGAATAGAAAATAAGAGCCCATTTGAACAGcGAATGAAgaacagtaaaagcagtaataaatATGAAGGCTGGCCCGAGTCTCTGGAAATGGACGGCTGCATTCCTCTGCGTGCTCCTTTAGAAACTTAAGGCCTCGTGGGTGCTTTTGAACTGTATGAACACTTCTAACGTGAGGATCAAGAAGCACTATGTACAAGCACAACTCAGCTGCCTAAAGGTTTTACTCATCGGATGGTTTGaagtcaaatttttttttttttttttttttttttccttgtagaGCCGTCTGTTTCTTTTCAAGTCTGCGAAACAAATTGAAGATAGAACTGAAAGTTGTCTCGTCCTGTGGAAGTAGAATTGTTGTGAATGacaaaaggtttgtttttatgaaGGAAAAATACAGACgcacagaatattttttaactatttaatttgtatgtttagaaaggttctatatataaaaaatgtgtaaagttGATGCTGTAAAAAATCAGTGCCTAGCGGTTGTTTTGAAGGATGCcattaatatgcatttgcaTTGAAAGAGATTGTTCTACACGTGTTAAAGAATGTCCAGAGAGTCTATTAAAATTTTTCACCTTTTTCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247865.1 lncRNA upstream 20137 14264664 ~ 14273735 (+) True LOC122328961
TU233262 lncRNA upstream 97176 14196431 ~ 14196696 (+) True G157531
TU233251 lncRNA upstream 146256 14147410 ~ 14147616 (+) True G157521
TU233224 lncRNA upstream 198825 14094078 ~ 14095047 (+) False c1qtnf12
TU233288 lncRNA downstream 6457 14304574 ~ 14343274 (+) False si:dkey-151g10.3
TU233289 lncRNA downstream 6457 14304574 ~ 14343274 (+) False si:dkey-151g10.3
TU233290 lncRNA downstream 6457 14304574 ~ 14343274 (+) False si:dkey-151g10.3
TU233302 lncRNA downstream 75460 14373577 ~ 14375050 (+) True G157551
TU233363 lncRNA downstream 266223 14564340 ~ 14566056 (+) True G157608
XM_043225079.1 mRNA upstream 36160 14246442 ~ 14257712 (+) False arhgap4a
XM_043225077.1 mRNA upstream 36160 14246443 ~ 14257712 (+) True arhgap4a
XM_043225078.1 mRNA upstream 36160 14247170 ~ 14257712 (+) False arhgap4a
XM_043225080.1 mRNA upstream 36512 14246442 ~ 14257360 (+) False arhgap4a
XM_043225467.1 mRNA upstream 48168 14240745 ~ 14245704 (+) True casp9
XM_043223953.1 mRNA downstream 1584 14299701 ~ 14343274 (+) True si:dkey-151g10.3
XM_043223955.1 mRNA downstream 1584 14299701 ~ 14343274 (+) False si:dkey-151g10.3
XM_043223954.1 mRNA downstream 1584 14299701 ~ 14343274 (+) False si:dkey-151g10.3
XM_043223956.1 mRNA downstream 1584 14299701 ~ 14343274 (+) False si:dkey-151g10.3
XM_043223957.1 mRNA downstream 1584 14299701 ~ 14343274 (+) False si:dkey-151g10.3
XR_006247900.1 other upstream 237051 14056685 ~ 14056821 (+) True LOC122329330
XR_006247901.1 other upstream 239372 14054364 ~ 14054500 (+) True LOC122329331
unassigned_transcript_2622 other upstream 2775336 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 2778001 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2619 other upstream 2780026 11513773 ~ 11513846 (+) True trnan-guu_36
XR_006247782.1 other downstream 1584 14299701 ~ 14343274 (+) False si:dkey-151g10.3
TU233368 other downstream 385873 14683990 ~ 14685316 (+) False LOC122328906
TU233419 other downstream 414030 14712147 ~ 14714533 (+) True LOC122328914
TU233447 other downstream 437884 14736001 ~ 14749402 (+) False LOC122328907
TU233466 other downstream 694233 14992350 ~ 14996145 (+) True G157656

Expression Profile