RNA id: XM_043224965.1


Basic Information

Item Value
RNA id XM_043224965.1
length 4204
RNA type mRNA
GC content 0.45
exon number 29
gene id ptpn22
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 15324344 ~ 15338267 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

agagagaaaaagagaaggcCATAGACAgacaacaaacacacatgcaacaaaTGAAAAAAGCGAGAGAAACTGAAGTGAGAGATGGAGGGCGGAGAGGGTCACAGTGATGCTTCGAGTTGACCACAGAACCGGTGAACTGCCACTGCTTCCGTGACGCCACATCGCACAGTTCCTCAGCTCAGCTACAGACCTACAACAGACgcacacagagagaaagtgaaagatGGACTCCTTTCAGAAGCCCACCGATCTCCCCTATCTCTGACATGACTGAAGGAGCTGCTGTGTCACACATCATGCCATGGACGCCCAAGCCCACATTCTGAGGGACTTATTGGCCAAAATTGCCAGCAAAGAAGCAGAAGAGGAAGGGGCAGAGAATGGTTTTGCCGGAGAGTTTTTGAAACTGAAGAGACAGTCTACTAAATACCGCGCTGAGAGGACGTACCCCACCTCAGCCGCGGACAAACAAGACAATGTGAAGAAGAACAGATACAAAGACATTGTTCCCTTTGATCACAGCAGAGTAAAGCTCTCCTTCGTCACATCCAAGCATGACACAGATTACATCAATGCTAGTTTCATTAAGGGAGTGCTGGGCACTAGGGCGTATATCGCCACACAAGGCCCGCTGCCAAACACTGTGCTCGACTTCTGGAGGATGCTGTGGGAATACAACGTACAGgTTATTGTGATGGCTTGCCGGGAGTTTGAAATGGGAAGAaaaaaatgTGAGCGTTACTGGCCGGAGTCAAAGGACGATGTGTTCGTGTGTGAGCCCTTTACCATTCACTATGAGTCTGATGAGAATAAGGGAGAATATTTAACACGGACGCTGAAGGTGAAATTTAAACAAGTGTCTCGGACACTGAAGCAGCTGCACTATGTGAACTGGCCGGATCACGGAGTACCCGACTCCATTCCTGCCATCCTGGAGCTGCTGCAGGACATGAGGATCTACCAGGATCACGATGAGATTCCCATCTGTATTCACTGCAGTGCAGGCTGTGGAAGAACAGGTGCTTTGTGTGCCATTGACTACACCTGGAATCTCCTGAAGAGACAGATGATACCAGAGAATTTCAGTATCTTTGAACTGGTAAAGGACATGCGCACACAGAGGCCCTCTGTGGTTCAGACTAAGGAACAATACGAACTAGTATACAGGACCATAAAATTGCTGTTTGAGAGATATCTAGCAGCAATGGATCAACCAAACAGAGAGGTCCCAGCTTCCCTTTCTCCTGTGATCTTAAGTAGCGGAAGTGAGCTCTCGGATTTCAGCGACTCTGAATCAGAGACTGGGACAGACTTCACAGCATTGCTTCGAACTGAGCACAGGAATGAAGAGATGGAAATGCCTGTACTCAATCACTTCACACACAATGCCCCTTCTTGGCTACAGCCTCATccagaaccattcagtcaagaGGTCATCTCCACAAAACTCAATCCTGCAGACACGCTCAATACAAAGAGTGAATGGACCCAGATTACAGACCAGAGGTCGTTCATAGCAGCAACTCCTCAAACAGACCTTACAACCTGTGGATCTCAGAGAGCCGAGCCATCCATCAGCTTTACCACTGATCTCACCCACGCTGCATGCTCGAACTATCCCATCAGCCCAACTACGAGGCATGTGATGTTTGCAGAGAACCAAGATGTTAGTCCTGCTGCCACAGACCACAACCCTATCATCCCTAGCACTGTCTGCTACACTGTGGAAGATCCTTATTTTGGGCCCGAGTCTCCACCACTTTGCAACAACCACAGCGCTTTGGACTCTATAATTCATGATGAGTGGAAGGAGAGCCCTTGTTTCACAATACCTAGTTTAACGCTTAATAATCAGGTGTTAGAACTTCCAACACATGACTGCAATGACAAAGgTACAAACAGACCTTCATCTGATGAAGACACTCCTCCTCCTTTACCAGACCGAACCCCAGAGTCATTTATTCTGGCAGATGAAATGAACGATATCAGTGAAAACACTGAGATGTTGACATTGGTGATGCCAGCCAGCTCAGAGTCTGAGAGCGTCATTAAAGACAGCCCACCTTCACCTGTGCCCCCACTGCCTGAGAGAACTCCAGAGTCTTTTGAAATGGCCACAGATGAGGCTTTGGTAGAAAACGTGATGCAGGAAAAGCCGCAGGACGTTGTAATGAGAGTTGGAAAATCTCTAGAGTGGTCTGGGCAATCAAATGAGGCTCAGGCAGACAAGAAACGATCTTGGTCCAGAAGCAAGAGCTTGAAACTTAGAATGTCGCTTCCTGCTGCCGCATTATGTGCTCCACTCAGTCCTATTCCGATCACAAGTCACAGTCCTCCTCCTCTACTGTACAAACATCCTCAAGaatctCTGCTGCACGCCCCGGCTCCACGTGAGCAGGCATTCACCTCGGTTCCCGGGACAGAAAGTATAACTCCACCTCCTGAAAGGACTCCagaatcttttatttttcacacgGAGAAAGtggCCGACGGCAGCGCCCCCTGTCAGCCAGCTAAGGCAGAGCAGCCCAGACCGAGAGTGGGCACGTCCTCTGAATGGTCAGGCAGCTCCCAGCCCAGATCATCCATAGAGCATTCTTGGAGCAGAAGCAAGAGCGTCAGAgcaaaaagttcaaaacaagAGACTCTATCTGTGGCTCCGCTGACTCTGCCTGTCGCTGTAACCATAGCAACTGGAGGACAAGCAGAGCTCCAGACGGCAGCCAGCAGCCAGCCGAAAGCAACGGGACCAACAGAGAACCAGGATAAGGGTGGAGAGAAAACTTCTCTGGTCAGCAAGGCCAGGACCAAGagTATCAAGTTTTTGAAAGGAAAGCAGAAGACAAAAATATCCCCGCCTCCGATCCCGCCCCCAGCCCCGCCTTCAGGCCAGTCTCCAGCCCCGCCTCAGTCTGCTCTACCGCCCTATGGTGCCGCTGTTGGGTTCTTATTTTCTTTTGGATCTCGTTTTGGGAAACCAAAAGGCCCACGAAATAAGCCAGGAACATGGGTCTAGTTTACACCGAaggtgaaagaaaaggaaaagggCCTCGCAGGACAGTTGAAAAGATGATTTACTGTCACTGTGGCTTTGAAGGATAGAAGCGCAACATCGTACCTCACTCAGAAGATGGACATACATAAAGACTGTGCTTTTATCAATGACTTTGACATTTTGTAAAGGTATAATGCAAGCGAACTGCCTTTTTAGACTTTAAATATTAAGGAGCGTCGCAACTTTATGCgacttaaatgtatattaaaattattgcaGATGTGTAACTAATGACAAGATAACACAAGGGATGAATGTACTGAAAAGTAGAAACTTCCATAATCTCATaggtaacattttaatgtattttataatatatagcaCCGCAGGTAACCAAGGCCAATCAAGATTTTCTATGTGACACATCGATGCACTTCGTCACAGTGCATTTGGTGCCATCTGAAAGGGATGAAATtgctttttcttatttctatATTTCCAATTTCTGATACAGTGAAACTCTTGGTACACTcataaaatggtttatttaaaaaaatacagaaaaaagtcTATGCATTCCattgcatttttacacaattgAAAAGATCCACGTGACAGTTCTATTAAATGTAACTTagcatttacaaaacattactTTGACTATGTTCATAAATGACATCTAATTAGTCCTTAAAAATCAATGAAATCAAAAACCTTTATACAAATATCAAACAGAGCAAATAATGAATCAAACACACAGAGCATGCCTTGATCCCTAAGTGGATTTTTCCTATATTACAAACGACCATCGATACCTgatcaacacaaaaaaagaaaactagctGCCAAAATTCAGAAGAAACATAGAACACTAAACAAcatgtttatttcaatataaCATGAAACCGTAAGGTATAAAAGCATAATGTGATGCAGAGCTGAAAACATGTCTGAAACGGTATATATGGGAAGATTCATCGTAATAGATTTTACTGGTAAAGACACCAATAAAAAAGGTCTTTAAAAAATTAGTAGAGTAAGTATTCTAGGCGAAAGGAGGAAATgatcttttctttcattaaaatgttaaactgcAGAACATGTAACTAAGGAAAAGCCATTGTATACTATAgggaaaattatttttgtttcggCTTTCACACCTGCCTTTATAATACTAATCCTAATTAAAGATTTCTGGGAAACATA

Function

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K18024 PTPN12_18_22; tyrosine-protein phosphatase non-receptor type 12/18/22

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233485 lncRNA upstream 12650 15182135 ~ 15311694 (+) True G157673
TU233431 lncRNA upstream 14857 15179596 ~ 15309487 (+) False G157633
TU233435 lncRNA upstream 142513 14699940 ~ 15181831 (+) True G157633
TU233426 lncRNA upstream 165593 14676736 ~ 15158751 (+) True G157630
TU233425 lncRNA upstream 165593 15156461 ~ 15158751 (+) False G157630
TU233537 lncRNA downstream 140776 15479043 ~ 15482462 (+) True G157704
TU233538 lncRNA downstream 144405 15482672 ~ 15486980 (+) True G157705
TU233565 lncRNA downstream 202526 15540793 ~ 15543928 (+) True G157728
TU234068 lncRNA downstream 273340 15611607 ~ 15615798 (+) True G158030
TU234069 lncRNA downstream 274968 15613235 ~ 15613850 (+) False G158030
XM_043224984.1 mRNA upstream 158806 15159750 ~ 15165538 (+) True LOC122328905
XM_043224992.1 mRNA upstream 246834 15074016 ~ 15077510 (+) True LOC122328910
XM_043224991.1 mRNA upstream 554018 14759390 ~ 14770326 (+) True LOC122328909
XM_043224989.1 mRNA upstream 566127 14725910 ~ 14758217 (+) True LOC122328907
XM_043224113.1 mRNA downstream 137456 15475723 ~ 15478611 (+) True si:ch73-206d17.1
XM_043225537.1 mRNA downstream 262385 15600652 ~ 15608453 (+) True zgc:158263
XM_043225542.1 mRNA downstream 334785 15673052 ~ 15685048 (+) True cacnb3b
XM_043225416.1 mRNA downstream 353243 15691510 ~ 15702243 (+) True rnd1b
XM_043225319.1 mRNA downstream 386516 15724783 ~ 15729206 (+) True ptges3a
TU233395 other upstream 19794 15300704 ~ 15304550 (+) True G157620
TU233466 other upstream 328199 14992350 ~ 14996145 (+) True G157656
TU233447 other upstream 574942 14736001 ~ 14749402 (+) False LOC122328907
TU233419 other upstream 609811 14712147 ~ 14714533 (+) True LOC122328914
TU233368 other upstream 639028 14683990 ~ 14685316 (+) False LOC122328906
TU234237 other downstream 645403 15983670 ~ 16083529 (+) True G158152
TU234236 other downstream 669377 16007644 ~ 16008846 (+) False G158152
TU234249 other downstream 683932 16022199 ~ 16023394 (+) True G158162
TU234659 other downstream 1282931 16621198 ~ 16664314 (+) True G158446
TU234708 other downstream 1393079 16731346 ~ 16731899 (+) True G158486

Expression Profile