RNA id: XM_043224968.1


Basic Information

Item Value
RNA id XM_043224968.1
length 8522
RNA type mRNA
GC content 0.40
exon number 7
gene id LOC122328901
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 14905836 ~ 14933006 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGTAATTTTTGAGCAGCGGAGGAAGTATTTGGACTTAAAAAGCGGTTCACTTTCTAATTACATGTCATATTTCAGTAAATGaaaagctgttttctttttccagatggCCACAGAGGTGTTGGAGGATCTTCTGGAGGAGGATGACGAGGTTGTGGAGGTTTGGTATCTGTTAGGATGGCTGCTTTATTTGCAGCTGGACAAACAAGACTTGACAAACAACGGTGTGAACTTCAGAAAATCAGCTTGGACGTACCTTAGCAAGGCCAAAAAGCTGTATGTGAAGCTGCGCTGTGAGGACTCACCCATGTTTGAGCATACGGAGCAGCTGTTAGCAGAGCTGGGTGGTGAAGAGCATGgggctgatgatgatgatgatgatgaagccGGACCATCTGTAGACAACATTGACgatgattttattcaaagcagCGATGAAGATGACGATGCCATGGATCACTGACTCAACGTTTTTCACTTGCTTATTCTAATCGTCATCCGTGGACTCGTCCAATCAGAATATTAAACTGAAAGCAGATGGCTGATCTTCACAGTCTCTCTACCAGTCACTTTTCTTTTCCCCTTCTATTCCAGTTTGATATGTCTGACTGGGATGTATTTTctgtttgcttagtttttttttgcatgctgagACTACAAACCATCAGGACATCTGTCACACTGATCTGGACACTGATCAAGATGCTGTTTcataataactttaataacagttttataaatgttacaaagcacaaaaagtatcataataaaaacaaaaaatccaaTAAAGGCATTTCTAAtaccattaaaaatatatatccataaaacatgcttaatgtttttattttttcagattatgttttgttttagcgTATGAGAAATGCATTGGAACtgaagtattttaaaacaaacaactaaatGCCAATACAAATGTTTATGTCTCTCTGaaatggtgatgatgatgataatggtGTGAAAACATCGTCTCATTCTGACTTCATTATGACTTTAGCTCTTTTGTAATCGTAATCAGTCATAATCCGGAATCTGTGCAATGAACCCACTAGCTGGAAGAAATTTCTTCTCAAcatagttttgtgtttgtttatgtcaTTCCCTTAATGATGAACTTAAGGATCATTTTGGTTATGGATttgcaaaaatagttttgtttatcTTGATGCAGACCCTAGAAATGTATCATTATAATGCCACCATCATAATACAGTACATTATGACAATGAGccttgatgtttgtttgttttgtacttTCCGATGGTCTCCGTCTGTCCTCCAGCTTTCACAGAGAACCGTTTTTATGGACTGCTTCAGTTTTTCCCATCAAATATTTCAGAGACACTAGAGCAAGCCTCCTGAGTTCAAACGAGACATTTGGTTTCATTTTGTGAATCCTAAGCAAATCTCATAATCCGATCGCACGAGGCCTGCCGGTTCCCAGCCCTAATGAAGATTCTCAAGTTTTAATTAAGCTCATGGACTTTTAGCTTCTCAGAGATGGAGAGTCTGGATGAAATATAGTCATATTTTGACTAAGcaatcttttttccttttttgcaaCAAATTTTTCTTCTGCCCATAAAACCAGTATAACCTCTTTTATACGTTTTGGGCCTGTAggattctttgtttttttttttttttttttactccttcCAAGAATGCAATATATTTGATCGAGAACAGtcaaaacggtaatattgtgaaatattattacaataaaaaaaaaaaacgatttgaATATATTTCCTGACACATTCTGTGGTTACTTTACAGCAAGGCCTTAGGTACTGTGAACACCTTAATTCGTTCAAAACGAGAGGCCTCTGACAGACATTTTACACAGACagagcatgttttattaattcactGGTAACAGCGACAAGAAGGGAAATGACAGAAAGCAGAACACAAATGTATGAATGAGAAACATTTATGCTAAAGCATGTCAAGGTTGAGACACCGTATGTGTACTGATAATTCAGtgatatgtttaataattccTGAAAGAAAAATGAGTGTGCTGGCTGCTAAAATAGATGAAGCCTCCTTTATACTTTGTTCTTCACAGTCAAGGCCGTTACGGGAAGCTCCCTTACAGAAAGTCACAAGAAAACAGCAGCCAAATGGGAGATCGATGACAAATTGGTCACCTGAATAGCAGGTCTAACTCACAGAGAAGTCGCAGTGTCTGTACTTGTCAGGTCAGTCTCAGTGATACATTTAGAGCCAGCTTTTCTCCTGAGGGTCAAGATTACGCCTTGTACTGGTCTGATTTCAATTATAAAGGCTAGTCATCCATTTACCCTCAGGATTTGGCAATACAAAGCTTAAATGTCAAAAGGCTTGTCACTTTTTGATCACGAGGCTGTATGTAATGAAAATGGAACATGGTTGAATCAGACAAAACCAGCTGCCGTTGACGCCTTTATATTCGGTTGTCATCACTAAACAAATTAATTCTCACTTACCAGCAGCTTTCCTgtcaattttatgttttttgagaGAAATTTGATGGCATGCTGTGCCTTATGGGTAATATGCTCCCACGAGTTCTCTTGCTTTGTTGACTCGTCCCCTCATCCATCGAAGGGTCGATTTTACACTTGGGCTTTTAGAATAATGGAAAGGCACTTAAGATGGCAACACGCTTTCCACCGGGGAGAAAGCAGCATGAGGAAGAACATCGAGAACATGTTAAATTGCGTTATGAAATAGGGCTGTGGAGTAAAAGTGTCAAGGGCAAGACTGCTATTAAAATCATCTAAGCTAAGGTTTAATATCTGTTAGCCTCATTTTGAGGTAGGAGTTTTCTGTCTGGACAGAAGTGTACTGTAATGTTGCTTCTTTCACAAATGCGGTGCACTTTGGTGTCCTATGACTTTTCTAAAAGCAGTAGAAACACAAACaccatgcttttattttctgaCCTGTTACTGTAGATGTGTTTCataatgtactgtattataACATAACTTTTACTTGGCATGAAAAGTAGCTTGTTTTAGACATCGTAAAAAATAGCTGAGCCAAGTTCTATGACGTGGGACAGGCCAAAACCTCTATCAAACAAAAATTAGAACCAATCTAAACGTATCAGTAGCTATGAACCAACATTTAGCTACTACTGACTATTTTGGGCTATGTTTATAGTTTTCATAAATCTCACATTTTGGCAATAAGGTTTGCTAACATGAAGTACATGAATATAACAGATTATACTTAATTTGGGTTGATAGCCATCTGAAGGTTTATGAAGGtcctgttttaaatataaatgataaaattaaatataatatttggaCAATGTTGGTAACCAAGCCATTTTGGTGATCCTTCTGTTGacttgttttttagtttttttctccagtggggtaaaaacaaataaaatctaaaaccttcttatgttccacagaataaaGTAATTCTCATAGAGCTTTGAAACAATATCAGGACCCCTTTTAGCACCATTtgttaaaaagagagaaaaaaaaaaacggcctATTTTGTATCATATTCATGGAAAGTGCCATTTGTGGTTTTCCCTGTTACTCTTCACCATCGCTGTATGGCCTCGGGTTATATGGAGGATTGAGTAGAAAGGCTGAAGCACATTAATAACAACTCCAATGACTAATGAGAGCTCGGCTGGAATAGgagatatttttggttttgtgtcAGAAACTCCTCTATGGCATACTGTATGGGTTTACTGGCGGTACAGCCTAATACGCTAATTACCGTTTTTTCCCTGGAACTAAATGAACATGGAGCTCATTTGTTATAAGCTGAACTGCATTAAAGTACAAAAGTACTCTATAAAGCACCTCTAAAACTCAATTATATACTGTACAGGTAATTAGTGTTTTTGCTAAGAGGAACGGAGCTTGTGTAGATAAGGCGTTACTGTATAGACCTTCAATATTTTCTTCTTAGTGATGTCTTCTATGTTAAGTTAAAGCAGTCGATGTTGCCATCAGTTTTAATTGCAGACGTGCTCTATCAGAAACAGTATCAGCTTCGTCTTAGCTCCTGGAAGGCATGGGAATGGGATTGTAGAGAGAAagcaaaaatctaattattcaGTCAAATCAAAGTACTCCTATTAAGCAGAAATTGTTCAGAGAGATTCTTTGTTTTGTTACGAACAGATAATCACTCTTCACTCCACAATCAAATTATGCTACTGTTGTTTATTCATTGCCtcaagtttttaatttaaaactgcttttgttttcaaGAGAACGGGCTTTTGTTTATTGCTGGGAGTCCAAATATTGATGGTGAGTTTAGATCGGTTCTTCTTCAGTTCAATTTAGCAAGCCGAAGGCTTCTCTAAGAAGTCAAATAAGTGATTTTGGGGCTCACGGCGTGCCAGAACCTCTTCAAACTAAAGCGACTAAGTAAGTGGATACAGATTAAACACAGCTGAATTTCAAGTGCCTGTCAACAGTCTCTCTCCCAAATAATCTGCCTCATCTCTTTGAAGAATTCACATTCAACCATGTGGGAAAATAATCTTAGAGCAGAGAGATCCTGGCACAGATTAGCCTCTGGCATATTGGAATTCTAAACACGCGAATGGAAGAGAAGCCACGCTTTGGAAAGGTTTTCAAGGCAGTTTGTCCTCAGATAAGTCTAGATAGAGGGATTGTGGAAGTATAATCCGAGCACCATCATGAGCCCTCCTAACATTCTCCTTATCAGACTCGGGCTGCGCACCCACGGAGGCTTTATTTCCTtacagaatgagagagaaacaaGTGTGACCAACATCACCGGAGGCGGCACAGGTTCCAGCCGAGCAGAACTTTCCAATTACCTGATACATGGGCATATAAACAGAGAGTTAGCTCTGTTTAAGCCGGCAAGTTCCTTAGAGATAAAGACAGATTCTAATCTCTGTTATTGTGTTCTTAACCTTCACTTTTCATGTTTTACTAGCAGTAATCCTCCACTGAGAGATGCCGATAACAGTGATAATGATGTACAAGCTAAATGCAACTTTAATGGCTTGCACTGACTGAAAAACAAAGGCTCAGATCTTCTGTTTCAAACTAAACATTGGTCCTGTGTGGCTGAGGGTGCAGAAGTGCTAATTAGATTTATAGACTGAAGGGGACCTCTGAGAGCGTATGAATCATCTGTAATTTGATAGAAAATGTGATAAGACTCGCACAAACatcatatttgaataaaaggttccacaaaagaaaaaaaacactagcaaAACGATAGTGTTTTGAAAgctttttaaagccatttttatccAGAACGCTGTCAAAGGATTCAGTGTACAGTTCCTTTCCAcataattctctctctctttctttctttcactcaaGGTCTGTCTTTTCAAGGTTATAAGCAATTTCTGCATTCCCCCTCTAGTTCTGTGAAATCTGATATGGCCGTATCTGTCCCTGACCGATCTCAAGCGTCTGCGTTGTACATCAAAACAAGACAAGCACTCACTGACACTGTCCATGAGTCATCGCTCTCACAACCTCTCTGCCCATTTCTCCTATTCTCTTTTCGGTCTAACGTATATATTCATCTTATGTGATCTATGTCAAGGGAAAGTGTGaaactcatttttttgtttgagcgTCGGCGAGTGTAACTGTGCAGACATTCCCTGCAATATGAGcatcacacatttaaacatagaatatatatagacagaatttttgaagaaattgtACATTCATTACAGCATtgcataaatgaatacatgtaaaaagaaactttataatgtaaaatgtaagctacatttaataagtaataaacgttttacaatgcattttgaTTTTCTTCTAATAGTCGCACTCAAAAAAGTGACTATTTCCAGATCACTAATCAAATATATAGTTCACTCATACGTACAGCTGTGGTCATTATGACAGATTCATTACAATATCCAGGATGGATATGTACGAGCGGCTCTTAATGGATCTATCCATTTTAATTGGTAAATGTAATGGAAATGGAGCCCTTTCTTATAAGACTTCATAAAAGTCTTGAGTCGCTTGTTCAGCCTGACTAACCAGTTTTGCTCATATTTGTTGTGCACACAAGAATAATATTCTTCATTTCACTGTCAGCGCTTCTGCGGTGATGAGAACAAAGgcAGGGTTATGAATAAGAGAGTGCAGCGATGGCTACTTGTGAGGCAAGTGAATTTGGAGTCCCGTTTCTCTTTGATTTGAGGATTGTGTTACTGGGAAACAGAGCAGCAGGGAAAACCTCTTTGGCAAACCTAATAACAGGTCACGCAGAGCCTCATCTAAGAAGAACGGCCCAGTGTGTGAAGATGCATGGAGATTTTGCCGGAAGGCAGGTCACTGTAGTTGATACGCCGGGCTGGTGGAAGAACTACCTTGTCAAAGAAACCCCTGAATTTCAAAAACAAGAGATTGTGCTTAGCGTAGCTCATTGTCCTCCTGGGCCCCATGCCGTTCTGCTGATCCTACGTGTCGATTCTTTATTCAAAGAAAAGCACAGGAGGTCGGTGCAGGAACACCTTGAACTTTTGAGCGAGAGAGTCTGGAACCACACTATAGTTGTGTTCACGTATAGAGACCAGCTACAGGAGCGAACTTTAGGAAAGTACATTGGAAGTGAAGGAGAGTCTCTTCTGCTCTGGCTAGTGGAGAAATGTGGACGTAGATATCACGTTCTTAATACCGAGAGAGCCACCGGTACGCAGCTGGCGGGGTTAATGGACAAAATAGACACGGTTGTCGTGGGAAATGGTGGCTGTCATTTTGAAACGGACAGAAAATGGATGCATATGGTGGAAGGAATGATGACGAAGAGATACATGAGAGCAAACCAGAAAAGGAAGATGGTGCAAGAACAATGGGAGGCTCCACTTGTACGACAAGGTCTCAAACATGTCCACATTCCTAAGATGAGGATGGTAATATTAGGTTTTCGAAGGTCTGGGAAGAGTTCGGCTGGAAACACCATTTTGAGTGTGGCGACATTCATCTCAAAGAGTACCTCCGCGTCTGTGAGAAGACAAGGCGAGGTGGATGGAAGGCATGTGACTATAGTGGACACTCCAGGCTGGTGGAAGTCTCTGCCAGCAGCTGACACTCCTGAACTGGATAAAGAAGAGATTTTCCTCAGCATGTCTCTCTGTCCGCCAGGACCACACGTGTTTCTGCTGACTCTGCGTGTAGATGTGTCATTCACAGCAGCAGAGAAGACATCAGTGGAGCAGCACATGGAGCTTCTGGGCGAGAGAGTCTGGGCTTACACCATAGTGCTTTTCACCCATGGAGACTGTCTGGGGGACGTGACTGCTGAAGAGTTGATTGAGAGCGAAGGGGAGGCTCTGCAGTGGCTGGTCGAGAAATGTGGGAACAGATATCATGTCCTCAACAATGAGAACTGGAATGATTGCAGTCAGGTCACAAACCTGCTGGAGAAAATAGAGAAGATGGTGGCACAAAATAAGGGCCATTATTATGAAATTGACCTCAAGACACTGAAGGAGGTGAAGCAGAAAAGGAAAGCAGtggaaaagaaagcaaaggcaagagcaaagaaacaaaaacagatgagGGTGATGGACAATACATTGAAGGATTTTCGAAAGCATTTCTACGAATTTTGTCTTGTGCTGCTGGGTTATGGAGAATCTGGGAAGAGTTCAACAGGAAACACCATCCTCGGCAAACAGGTGTTTGGGTCGAGAAGAACAGCCCGGTGTGTTCAGAGACACGGAGAGGTCGGAGGACATCGGGTCAGCATCATAGACACCCCTGGCTGGTGGAAACATCTGCCCATAGAACAAACCCCTGAACTAAATAAAGACCAAATCACGCAGAGTGCATCTCTATCCGATTCTGGACCAATCGTTTACATTTTGGTCCTTCGTGCCGACTGTTCTTTCAAAGAGCAGGAGCGGAAGGCGATGGAGGATCATTTGAGGCTTTTGGGCTCCACGGTTTGGGATGACAGCGTAGTTCTGTTCACATTTGGGGACGTGCTCGGAGACAGAGCCATCGAGAAGCACATTGAATGCGAAGGAGAAGCTCTGCAGTGGCTTGTTGATAGATGCGGAAACAGgtatcatgtttttaataacaagGCCGAGGGTGAGAGCCATCAGGTCGCAGAGCTGCTGGAAAAGATACAAGAGTTGACTGCAGCAAACAGCGGGTGCAGTAACAAAGACATGCAGGTGCTGCGGGAGGTGACGGAGGGGAGGAAGGTGGAGGAAGACAGAGCAAACACCAGACTGAAGATGCAGGGACAAAGAGAGGAAGATGAATCCGATGATGTATTTGATGATGGCGAAGATGATGAAGTCATTTGGGACTCGAGAGCATGGAAGTGGACGACAGCTGTATGAGACGAAAAGTTGGgaaatcattttcagaattagtgcttttgttttgttttcatgtagaaatctttaattatttattattattattatatatgctgtcaaatgattaatttatatattcatttaatttattcatttatacata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234007 lncRNA downstream 60158 14836361 ~ 14845678 (-) True G157999
XR_006247854.1 lncRNA downstream 74987 14830264 ~ 14830849 (-) True LOC122328920
TU233937 lncRNA downstream 176174 14651424 ~ 14729662 (-) True G157966
TU233962 lncRNA downstream 203724 14684890 ~ 14702112 (-) False LOC122328902
TU233965 lncRNA downstream 203724 14684890 ~ 14702112 (-) False LOC122328902
TU234018 lncRNA upstream 114167 15047173 ~ 15048287 (-) False LOC122328913
TU233960 lncRNA upstream 230795 15163801 ~ 15301682 (-) False LOC122328902
XR_006247855.1 lncRNA upstream 255142 15188148 ~ 15189638 (-) True LOC122328921
TU234028 lncRNA upstream 269360 15202366 ~ 15203950 (-) True G158014
TU233990 lncRNA upstream 277222 15210228 ~ 15338843 (-) True G157984
XM_043225000.1 mRNA downstream 97059 14772091 ~ 14808777 (-) True LOC122328919
XM_043225338.1 mRNA downstream 181611 14717745 ~ 14724225 (-) True LOC122329128
XM_043224382.1 mRNA downstream 226605 14672277 ~ 14679231 (-) True gdi1
XM_043224383.1 mRNA downstream 226606 14672277 ~ 14679230 (-) False gdi1
XM_043224565.1 mRNA downstream 269511 14624253 ~ 14636325 (-) True ada
XM_043224996.1 mRNA upstream 114146 15047152 ~ 15048344 (-) True LOC122328913
XM_043224998.1 mRNA upstream 116360 15049366 ~ 15073882 (-) True LOC122328916
XM_043224990.1 mRNA upstream 145580 15078586 ~ 15092247 (-) True LOC122328908
XM_043224975.1 mRNA upstream 232536 15165542 ~ 15185151 (-) False LOC122328902
XM_043224974.1 mRNA upstream 232536 15165542 ~ 15185151 (-) False LOC122328902
TU233895 other downstream 316243 14581094 ~ 14589593 (-) True fitm2
TU233846 other downstream 575052 14326966 ~ 14330784 (-) True G157909
TU233040 other downstream 1623509 13280256 ~ 13282327 (-) True G157373
TU233029 other downstream 1688428 13141078 ~ 13217408 (-) True G157367
TU232479 other downstream 2981186 11922844 ~ 11924650 (-) True G156985
XR_006247853.1 other upstream 414411 15347417 ~ 15474377 (-) False magi3a
TU234273 other upstream 766263 15699269 ~ 15717250 (-) False LOC122329227
TU234274 other upstream 766263 15699269 ~ 15717250 (-) False LOC122329227
TU234366 other upstream 1075100 16008106 ~ 16008915 (-) True G158231
TU234433 other upstream 1210827 16143833 ~ 16169834 (-) True G158288

Expression Profile