RNA id: XM_043224991.1


Basic Information

Item Value
RNA id XM_043224991.1
length 2661
RNA type mRNA
GC content 0.43
exon number 8
gene id LOC122328909
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 14759390 ~ 14770326 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAAGCCGCTGGTGCGTTATCTGCAGCGTGCAAGCGTTCCGGTTTAATCCCAAAAAAAACGCTGGAACGAGAGAGTTACTTTAAAATACGCTGTATTTTAAACCGAAACCACAACCGACCATACCACACAATGCATGGCTGTCACTGACATTTcaaagaatttaaaaagtatGCAGTAAACACAAAGCGTTTAACGCTGCACTGCATTCGAACTCCGAAACTCCAGTAACTGATTGAGAACTAGTCACCACCCCGCCCTTCTACAGAGACAAACCGGTCCAAGCAGAAAACTCTCCACAGACACATCACAGCGGCCGCTTACAGGTGAATGGGAAAGTTTGCTGCTGTTGTCGGACATGTCTTCTAGAAGAATACACGTCCAGTAATTTATCTGGAAAAAGctttttcattttagttgaaGTGCATTTTCATCTGCAGTCACGATGGagcaaaagaagaaaatctGGCCCAATCTCCGTGACAGAGGCAGGTTTAATCTGAAGATCGGAAAGAAGGGTCTggggaagaagaaaaagacCCCTCTGAAATACAGGAGGAGTATGTCAGTACCAGACCTCAGGATTAATCCCAGTGCCATGATGGATTTGCAGGATGATTCCAGGACGCCAGGTCAAGAGACCATCTTCTTTGGAAACGTGGAAGGTTCATGTGACCTGGATGAAACGGGAAGCGAAACCTCCAGCATTGCCTTATCTGAGCGGTTAAGTGTCGCTGACTTGCCATACTCCTGTAGCCCCGCGCCGTCAGAGAGATCAGCTCCTGTTGACTTTCCAGTTTTATTAGAAACCGACAAGCGGCAAAGAGCCACGACGTGGTACATAGATGATTTAGATGCAGTGACCGGACCTGTGTATCCACCTACAGAAAGACAGGTGGCACCTGAAAGAAAATCGCCTGGTCAGAGACTAAAAGACCCCACAGACAGACTGGCTGCGGCCCTCGGTAGAGTCGGAGCGGGAAGACAGACGCCTCCTTCACGAGGTTCAGACGAAATGTCTACACTGACCACCACGGAGTCGGTCAGCAGTATTCCACCTGAGGAGAAATGTCCTGCCGAGTACCAGCCATCCTCTCCGCTGGAAATGTTCATTGCAGGGTCAGCTGAGGACATGGACATTCCCAATGAAACCAGTGACTTTGATGCACTCGCAGAACAAGAACAAAATTTTCCAGCAGGATTAAATGACAGTCAGAGTGCTTCAGGGCTGCAGAAGGTCCAGTACCTCCTAGCCATCAACCTAAAGGAAGGAAAAAACCTGGTAGTCAGAGACCGCTCAGgtACAAGTGACCCGTTTGTCAAATTCAAATTAGATGGCAAGAACATCTACAAAAGCAAAGTTGTGAACAAGAACCTGAATCCCATTTGGAATGAATCGTTCTCCTTTTCCGTCAGAGACCTCGATCAGGTTCTTCATCTTAAGGTATATGATCGAGACCTCCGATCCAATGACTTCATGGGTTCAAGCAGCATTCCTCTCTGTAAACTGGAGTTGGACAGAATAATCCCCATGACGCTACCTTTGGAGGACCCTAACAGTGCAGAGACAGATATGGGAGCGATCGTTCTAGAGGCATGCCTGTCCGTCCGAGAGGAACCTGCCAAACGAAATAAGTGGCTACTGAGAAGAAAGGGAAGCTTTAATAAGGTATGTCATTTCATATAGCAGccatatacattttgtttaagtGTTCCATCAGACGACAAGAATGAAAACGTTACCAGAACGAAATAGACAGAATACACACTACTTTATTACAAATATCACAGCTTTATAACACATCTGTCCACTGGAGGGCAGTAGATCCTCACCATCTTCCCCCACAGACACTTGGCCGATGTTATGCACAACATTTATGCAAGTCTCTCTCATTTACTTTCACTTAGTTCAAAATTCCAAAACTTCAACAGAGCGAGAAACTTTTGTTTTGCGGCTGCGACTGTCTGATGCACTGAACCAATCCGCGATTTCCAAAGAAAACGCATCAGTGTGATTTAAACAAAGCGCAAGTCTGTCTTGCATTTTGTGCAGGTCAGCTCTAAGATGAGGGTTTATTTACCTCACAGCGGTTGGCAAATAGCTTTTATTGTTCAAGGCCGTTCAAAGTTTGCAATTTAAGATTTCTCTGAAATCTCTGCCACATTCTACTGTAGAGCGGGGTGTGGAGAATTTGCTTTTAGCACACTGTATTTATGAGCAGCATTGAATTTGATATGTCACACCGAAGCTGTAAAGAACAAAAGTCCGTgtgttatataatttatagcCCATTTGACAATGCGTAATATTAATGAGAAAGAGTTTTACAAGTTTAGAAAGTTTTCTCTTGTTAGTTTGTAAACAAAGTCTCGTCTTAAAAAGGTGAAcgttttatagaaataaatgtcactccaaaatttaaataaaataaattatttaacgGATAaataaagagacagacagacaaacagaaagaaGTAATTTTGTGTAAGCACAGTAAAGGCTATTTATTGATATAgataaaaatgtagtaataaaaacattttatttatttatttattttttgctttattcaaatttttattttagtggaaaCATACAGAGGTTTTCAGTAGTTACAGACTCTGCATGTTTATATAGTGTTCCTTTGACTattctcaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233443 lncRNA upstream 37905 14719934 ~ 14721485 (+) True G157640
TU233436 lncRNA upstream 56521 14702443 ~ 14702869 (+) True G157634
TU233434 lncRNA upstream 57215 14699940 ~ 14702175 (+) False G157633
TU233377 lncRNA upstream 122573 14623815 ~ 14636817 (+) False pkig
TU233410 lncRNA upstream 123269 14631840 ~ 14636121 (+) True G157626
TU233425 lncRNA downstream 386135 15156461 ~ 15158751 (+) False G157630
TU233431 lncRNA downstream 409270 15179596 ~ 15309487 (+) False G157633
TU233485 lncRNA downstream 411809 15182135 ~ 15311694 (+) True G157673
TU233496 lncRNA downstream 443001 15213327 ~ 15341005 (+) True G157676
TU233537 lncRNA downstream 708717 15479043 ~ 15482462 (+) True G157704
XM_043224989.1 mRNA upstream 1173 14725910 ~ 14758217 (+) True LOC122328907
XM_043224987.1 mRNA upstream 9827 14725910 ~ 14749563 (+) False LOC122328907
XM_043224988.1 mRNA upstream 9876 14725910 ~ 14749514 (+) False LOC122328907
XM_043224997.1 mRNA upstream 44835 14712434 ~ 14714555 (+) False LOC122328914
XM_043224986.1 mRNA upstream 72772 14680860 ~ 14686618 (+) True LOC122328906
XM_043224992.1 mRNA downstream 303690 15074016 ~ 15077510 (+) True LOC122328910
XM_043224984.1 mRNA downstream 389424 15159750 ~ 15165538 (+) True LOC122328905
XM_043224965.1 mRNA downstream 554018 15324344 ~ 15338267 (+) True ptpn22
XM_043224113.1 mRNA downstream 705397 15475723 ~ 15478611 (+) True si:ch73-206d17.1
XM_043225537.1 mRNA downstream 830326 15600652 ~ 15608453 (+) True zgc:158263
TU233447 other upstream 9988 14736001 ~ 14749402 (+) False LOC122328907
TU233419 other upstream 44857 14712147 ~ 14714533 (+) True LOC122328914
TU233368 other upstream 74074 14683990 ~ 14685316 (+) False LOC122328906
XR_006247782.1 other upstream 416116 14299701 ~ 14343274 (+) False si:dkey-151g10.3
XR_006247900.1 other upstream 702569 14056685 ~ 14056821 (+) True LOC122329330
TU233466 other downstream 222024 14992350 ~ 14996145 (+) True G157656
TU233395 other downstream 530378 15300704 ~ 15304550 (+) True G157620
TU234237 other downstream 1213344 15983670 ~ 16083529 (+) True G158152
TU234236 other downstream 1237318 16007644 ~ 16008846 (+) False G158152
TU234249 other downstream 1251873 16022199 ~ 16023394 (+) True G158162

Expression Profile