RNA id: XM_043224992.1


Basic Information

Item Value
RNA id XM_043224992.1
length 1532
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC122328910
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 15074016 ~ 15077510 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAGTAAGTTGAGGTTAGAGGTGAAAGGTTTTCTGGAGGTGGTTGACAGCAAGTGCTAACTTTCATTAGGAGCTGTTTTTAAGTGTCCAAAAGCTTAAAATGGCAGATGATCAAGGAGATGAAGTACTTCCTCTGCCTTGTATCTTAGTCACAAGTTGTGATTCCAGCTTTAAAGAAGAGGAGCTCGTTAGACaGATATTGGGCTCAGAATCACTACCTCAAGCTACCAAGACAGAGGAAAGAGTTTCTTGGTATCCATGGACAATCAACAACAAGTACTACACAGCAAACGTCAGCCTATGTGTCGTATCAAGTCCATTCGACATGAATGCAGAGGTTGCCCGGTCTATGCAAGCGTTCATCATTTACTTTGACAGCAAAACTAAAGACGGCCTAAACAGTGTCAACTCCTGGTTATCAGTAGTGGAGGATTTGGCTCCAGAAGTGCTGATCCTGGTGTGTGACCATGCGCGCGACAGTGGTGTTAGCAAGCAAGAGGCCCAGCAGTGGTGTCTGGCCCATGCCTTTGAATTAGTAGAGCTCAGCCCTCAAGATCTGCCCGATGAAGACGATGACTTCCCAGAGTCCACTGGAGTAAAAAGAATCGTTCAGGCCCTCAATGCCAACGTGTGGTCCAGCGTCGAGATGAAAGATGAGCACAGTCAGGGATTTGGGCTAATGAGCAGCCTGGTGGCCTCTCATCACAACAACCCACGACCTAGTCAAGAAACACTGTCCTCTCATTCCCCATCCAACAGTACAGATGAAGGCACTGAGAGCCAGAGAGCAGAGAACAACCAGAATAATGCAGTAGATTCAGCAGTCGATCCCATGATTGACATAGACATACAGGAGTTGGCTAATCTAACAGCTGGAGATGCAGATGTGGAGAATTTTGAGCGACTTTTTACAAAATTGAAAGAGATGAaagaCAAGGCCTCTTCATTGCCACATGAACAGAGGAAAGTACATGCAGAAAAGGTCGCTAAAGCTTTCTGGATGGCTATTGGTGGAGATCAAGATGAGATTGACGGCTTGTCGTCAGGAGAGGAGAGTTAAGGCCCTTGCTTCCAGCGTTGATACTCAGCCCACCCTTTGAACCCCCAGCCATCCCAAATCTGCCCAGCCCAATCCCGTCCCGTCCGAGAAACATGGAAGAGTGTGGGCAAAAAAAGGCAATGGAAATTTTCACGAAACTGCCGTTACTCTGGCGTCAGTGTCCAGCACCTCAATCAGGCAGTAGAGTGATTATGGGCTTTTGGCTTCAAACACTGTAATCGCAGAGCCGTGGGACGGGTTGCAGGGGGGCAAGATTAACTTGCCTGTTCTCTGGCGGTGTCAGTGCAAGTCTGCAATCACATACAAGGACGAAGCCTATGGTTCTGTCAAAAGAGTTGTAAATCAAATGACGGATGAGCTGACAAAAGTGgattgtttttaaacttttattttgccgATGTAAGTCACAATTACGGACTAAGCTTGTGCATGTCATTAGCTCTTCATCAATTAAAATAACGATCTGTCGAATCA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K23878 AAGAB; alpha- and gamma-adaptin-binding protein p34

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233443 lncRNA upstream 352531 14719934 ~ 14721485 (+) True G157640
TU233436 lncRNA upstream 371147 14702443 ~ 14702869 (+) True G157634
TU233434 lncRNA upstream 371841 14699940 ~ 14702175 (+) False G157633
TU233377 lncRNA upstream 437199 14623815 ~ 14636817 (+) False pkig
TU233410 lncRNA upstream 437895 14631840 ~ 14636121 (+) True G157626
TU233425 lncRNA downstream 78951 15156461 ~ 15158751 (+) False G157630
TU233431 lncRNA downstream 102086 15179596 ~ 15309487 (+) False G157633
TU233485 lncRNA downstream 104625 15182135 ~ 15311694 (+) True G157673
TU233496 lncRNA downstream 135817 15213327 ~ 15341005 (+) True G157676
TU233537 lncRNA downstream 401533 15479043 ~ 15482462 (+) True G157704
XM_043224991.1 mRNA upstream 303690 14759390 ~ 14770326 (+) True LOC122328909
XM_043224989.1 mRNA upstream 315799 14725910 ~ 14758217 (+) True LOC122328907
XM_043224987.1 mRNA upstream 324453 14725910 ~ 14749563 (+) False LOC122328907
XM_043224988.1 mRNA upstream 324502 14725910 ~ 14749514 (+) False LOC122328907
XM_043224997.1 mRNA upstream 359461 14712434 ~ 14714555 (+) False LOC122328914
XM_043224984.1 mRNA downstream 82240 15159750 ~ 15165538 (+) True LOC122328905
XM_043224965.1 mRNA downstream 246834 15324344 ~ 15338267 (+) True ptpn22
XM_043224113.1 mRNA downstream 398213 15475723 ~ 15478611 (+) True si:ch73-206d17.1
XM_043225537.1 mRNA downstream 523142 15600652 ~ 15608453 (+) True zgc:158263
XM_043225542.1 mRNA downstream 595542 15673052 ~ 15685048 (+) True cacnb3b
TU233466 other upstream 77871 14992350 ~ 14996145 (+) True G157656
TU233447 other upstream 324614 14736001 ~ 14749402 (+) False LOC122328907
TU233419 other upstream 359483 14712147 ~ 14714533 (+) True LOC122328914
TU233368 other upstream 388700 14683990 ~ 14685316 (+) False LOC122328906
XR_006247782.1 other upstream 730742 14299701 ~ 14343274 (+) False si:dkey-151g10.3
TU233395 other downstream 223194 15300704 ~ 15304550 (+) True G157620
TU234237 other downstream 906160 15983670 ~ 16083529 (+) True G158152
TU234236 other downstream 930134 16007644 ~ 16008846 (+) False G158152
TU234249 other downstream 944689 16022199 ~ 16023394 (+) True G158162
TU234659 other downstream 1543688 16621198 ~ 16664314 (+) True G158446

Expression Profile