RNA id: XM_043224993.1


Basic Information

Item Value
RNA id XM_043224993.1
length 3579
RNA type mRNA
GC content 0.36
exon number 8
gene id LOC122328911
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 15316727 ~ 15324022 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtaaaattttccAATTCTTGTATAAttcttaattacttttaaacaataatttgtCACGTGAGAGATGTGCCtctctaaaatgtattattttaggggtgtgtgtgtgtgtgtgtgtttttgtaatgtaatgtatttttttaggttttctcCTATGAGGTGAAGAGTAATCTAATATAAAAGAATCCAAGatgatataaaaatgtgaagaaaaagaaaatattcaatTTGTTGTTACATGATGTGCATTAACAATACATTACATCATGACTACCCAAAATGAAGTTTGTTAAAGCTGCAGGGGGTTTATtgtaaagcaaataaataatctttaaaatgtcttaaatgaatcattttaaaattacatcaTGTTTACCTTTATGTCATGCGACTACTAACCGATGGCGTATAATCGTGAACATGCAAAAGTAATACTTCATTATTGACttattactttaaaatctatttatattatgtgaaagtttatatatatatatatatatcactattcatttattaatcagAATCTTTTACGCTGGACTTGGAGGGTAAGTCTTCCATCTAGTGGTTGTTTAGTTAAATGACAGTATTTGTCCTTAAAATTACAATCTTTCTACTTTTcacccacacacatatatatatattattaaacactTATTAATCCAAATCTTGTACAAAAGGTACCAGGAATGTACGTGCGTCATCTAGTGGCTTTTTGGTAAATTTATGGTCTTTGACCTTTTACTGTATTGCAAAATAATGTGAATGTAACCTGTTGTAACAATTTCCTTTATACACATAACTGTCCAAACTCACCAAAAAAGGTTAGATACTCTGTATTATAATTCTTATTTGAAGGTTTTTGTATGAAGAGTGTAAAGACTGTTTGTGTTCACGTGTACATACAATATGTCAGTATATTGAGAGACCCTACAATGCCGTTTGAAAACCACAGTTTAGCCATGACTGCTTTACATCCTGTTTCACTCTAAATAGCTCACAACAAGGTGCTTCAACACGTAACATAGCTTTCACTCTCTCATGAACAATATGAAGAGCCTGTATATACTGCTTTTAGCACAGAtaAGTGTGCAGCTTAAGTGCGACAACACAAGGATTCAAGCCACAATTGGAAGCACTTTGACAATTACCTGCACCTATAAAGCAAACCAGTATCGATTCAGCAAAAAGTACTGGTGTGCTGGAGACTCCAGATCCTCGTGTGAAGTTCTGATGGACACAGATGGATTCACACACGCTGTGTACAGAACACGGGCTCAAATCATTGATGGAGCTTCTAGAGGCCTGACGGTATATATAAGAGATCTAAAGTTAGATGACAGTGGAACTTACTGGGTTGCGATTGACAAAATTTATGCTGATTTTATGATCAGGATCCAGGTCACTATAACAAAAGAGGCTGTAATAAAACCAAATGTTTGGCCTCTCAGCTCCCCCGAGATGACTTGCTGGGGTCAACCATCTGTGTTTCGCTGTAGGAGTGAGAGAGGAGCGGATGTGCAGTACACTTGGTACAGAGTTGGACACCCAAACAACATTGTTCTGCACCATTCCTCTGATCTCTATCTCCATTGTTCAAACATCACTGAAGACAGTCAGCTTTTCTGCTCAGCCTTTAATGACGTCAGCAGCCAGAGAAGCGAATTTGTTTCTCTGCATCTACTTCAGTCTGCAGAAAAGGACTGTGTTTATCGCATCTCATCGAACGCTTTCTCTAGCTATGAATGTATAAGAAGCACAACATCACTCTCAACATCCATCCAAACGACAGAGAAATTCCTGAGCTCTACAACGGTTTCTCATCTCACATGGAGTCAGAATAAGACAACGTCTTGGTCTGGTTTGCCAATGTGGTATGAGTGTCTTCGTTGGATTCTCTCCTCAGTTATGATTACCATCTTGTGCGTAGTGCACTCATgctcaaaatacacatcaaGCAAACACCCCAAAGACGTTTGATTAAGAGACATGGTTGCAACTTCATTTCaagtgtgtctttttttgtattttgaaattcGCGTTGACTTAAAGGATATTCTTTGTTCTTACCCACAAGGTGTACAATTAATTAATCTCTAAACCGCATTAATCATTCAGTCTTCACATTGTTTACATGACAAGCAGGTAATAACATATTAATGCAGGTAACATTGTCAAGCATTGCTGGAGTCAACTTGTATTCTGTTTGGTCCATCCACTGAATGAAACCGAACGTGGCCATTGTTATCTTGTGTGCCTTTCCTGGAAGGAAAATGCATCACACAATGAGCTATTGAAGTTGTTTTTGTGACCTTGTGCATGAACCGTGGTCTAGGAAAAAATAAGACTGATTTAAATCAAGTaaagtttgaataaaattaagtaaagaCTGATTTTGCTTTATACTTTTAACTCTAAACTTTGTCAGCTGAAACCCTTTGATCTAAAGTATTCATAAAATACCAATATTTGCCATTTCAAACGGTTTTCTTGTGTCACATGACACCcaaggaaataaaatgtttaatttctttctttatttttaagtcattttagcCTTTCAGTCGATTTAGCCTTTAGcattgcaaaaatatacaatatgttGTACATTTTTTCCATATATGGCCTTGAAATGTTATGGGCTCTGAACCATTATAGCTTTCTAACAGTAATAACAACAGCcgcaaaacaaaaagcattgaTTAATTTTCAATAACAGCCAATTTATTTTTGAGCTGCAAAAAAGgcataattaatgaataattagtTTAGTACTTCTACTATTAccaaaataatttatacataaataacagCCCTGTTCAAGcctttttatatatgtatttgtattcaaGTTTTTGGTTGGATCAGGTTACGTAAGAAAGGATTTAAACTTGTGCACACCCATCCTGTTTCCCCATTCTTCATCTTTTCGTGATTACTGTTGGGGACACAAATTCTTAAGGACTCCGCTCCAGTGTGTAAAACAAATTATTCTGAAATGATATTAGGCTAGTCCACTAATGTGCAGAGACTATGGCATTTATGTTGCTGAATCTCTTTGCTCCTGCCTTCCTGTGTCTTCTGAAAGCTGGGAGTATCAGAGTTTTCCCAGATGGATCCACTGTAACATTTGAGCGCAAGATTGGACACAGGCCAGTTGACTTAAAAGCACCTACATCATTTACCTGTAAGGGAAACCACTGGACAAGTCTGGAACTTAGTTGCACAAcaggacaacgaccccaaacatacagccaaagtaATTAAGAACTATCTTCAGCGTACAGAAGAACAAGAAATACCCGAAGCGACGGCATGGAGGATGTGAGATTATGTGCCTTAAATTTGGATGAATGTGTCAGGTACTCATCAGCGGGTTTCTAATGACTTAGCTCAAaatgatgtttctttttaaaacaattcacATATTTCTGATTTAAAGTGTGACTATTTCTCGGGTCATCTACttcttatttcagttagcaGTGTATTAACAccctctttcttttatttattttcctttttgttgtCATTGTCGGAAAGTCATGGGCATACGCACTTGATAAACACTGACTAACGCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233960 lncRNA downstream 15045 15163801 ~ 15301682 (-) False LOC122328902
TU234037 lncRNA downstream 20091 15295888 ~ 15296636 (-) True G158019
TU234028 lncRNA downstream 112777 15202366 ~ 15203950 (-) True G158014
XR_006247855.1 lncRNA downstream 127089 15188148 ~ 15189638 (-) True LOC122328921
TU234018 lncRNA downstream 268440 15047173 ~ 15048287 (-) False LOC122328913
TU234059 lncRNA upstream 152465 15476487 ~ 15477769 (-) True G158024
TU234264 lncRNA upstream 279826 15603848 ~ 15607080 (-) True G158174
TU234271 lncRNA upstream 297920 15621942 ~ 15702230 (-) True LOC122329227
TU234287 lncRNA upstream 356864 15680886 ~ 15681872 (-) True G158188
XR_006247888.1 lncRNA upstream 375749 15699771 ~ 15717244 (-) False LOC122329227
XM_043224313.1 mRNA downstream 119266 15195117 ~ 15197461 (-) True LOC122328567
XM_043224980.1 mRNA downstream 131581 15165542 ~ 15185146 (-) False LOC122328902
XM_043224966.1 mRNA upstream 15037 15339059 ~ 15347198 (-) True LOC122328900
XM_043224960.1 mRNA upstream 23395 15347417 ~ 15474377 (-) True magi3a
XM_043224961.1 mRNA upstream 23395 15347417 ~ 15474376 (-) False magi3a
XM_043224962.1 mRNA upstream 23395 15347417 ~ 15402050 (-) False magi3a
XM_043224964.1 mRNA upstream 25699 15349721 ~ 15474390 (-) False magi3a
TU233895 other downstream 727134 14581094 ~ 14589593 (-) True fitm2
TU233846 other downstream 985943 14326966 ~ 14330784 (-) True G157909
TU233040 other downstream 2034400 13280256 ~ 13282327 (-) True G157373
TU233029 other downstream 2099319 13141078 ~ 13217408 (-) True G157367
TU232479 other downstream 3392077 11922844 ~ 11924650 (-) True G156985
XR_006247853.1 other upstream 23395 15347417 ~ 15474377 (-) False magi3a
TU234273 other upstream 375247 15699269 ~ 15717250 (-) False LOC122329227
TU234274 other upstream 375247 15699269 ~ 15717250 (-) False LOC122329227
TU234366 other upstream 684084 16008106 ~ 16008915 (-) True G158231
TU234433 other upstream 819811 16143833 ~ 16169834 (-) True G158288

Expression Profile