RNA id: XM_043225000.1



Basic Information


Item Value
RNA id XM_043225000.1
length 4195
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC122328919
representative True

Chromosome Information


Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 14772091 ~ 14808777 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


agagagagagagagagagagagagagaaagggaatgAGAGACGTGCTGTCAGAGTGAGAGCTGGAGGACATGCATCCATTTCTACACAATATCAGACTATCGCTACTTTCACCGTTATTCATATCCAGATGCTACTTTAAAGCGCTTTTCTTCACATGAGGCGAATAATGGTAATTAACACAACGGGTGGATGTATTTcctgaaatattaaacagcgCACTAAATCCCTTTCCCGCAATTTATTTTCCGCTTTTATTTGGATCCTTGTTCAGGTGTTAAACGCAACAGCTTTCGTCTGTAGGAGTCTCGTTTTAAGAAATAGCGGTTTATACTTCTGTCGTTAAAAACCCGGAATCACTGCTTGACAACGGAGCGGAGAAGAAACGCTGGCATGATTTTGacaacatgaaaaagaaaaagtgtggAGGAATATTGTTGCACTGCTTTTGAAATCACCATATGAAGGTGGAGATAGACTGACAGGAGAGAGAGTTGAGGAGCAGAGCACAAACAAAcctgctggagcctggttgcCATGGATCCCCCTCCCTCTCTGAGTCTGGCCCTTCTCAGCGGGAGCGAAGACGAAGAGCAACGTCTGCCCCTCCCTCTCGGTGGTCTCTCCCATGCCTCCCTCTCTGGCAACTACCCTGGGACCAACCACTCGAATCACACGGGAGGCAACAGCAGCCTGGAGCGTCTCAATGGCACTCCGTCGCCCACCACGCCAAACCTTCCCCCGGCATCGCTGCCCAAGTTGCCCCTGTCCACAACACCCCAGCTGTCCACGCCAATCCCCAACGCGCTCCACCCCACCAGCACGCCGCTCTCCTCCTGCCTGGGCAGTCAACACAGCCTAAGCGGGGAGACTTCGCCCGTCTACAATGCGCTGTTCTACTCTTCTCATTCGCCTTCCACTGAGCGAGAGCAGAGGGAGCGAGAGAGGGGGTGTAAGCACAGGCAGGCCAGTCCCCTGGTGCACAGGCGGGACAGTAACCCCTTTACCGAGATCGCCATGAGCTCGTGCAAGTACAGCGGCGGTGTGATGAAGCCACTCAGCCGCCTCAGCGCCTCCCGCCGGAACCTCATCGAGTCCGACAGCGGAAGTGACACCAAAGAGGGCGGGGCGAGCGTGAGCCAGGCGACTGCGGCCTCCTCTCAACACAGTCAGTCGCAATCCCAGAACCCCCCAGAGATCGTCATCTCCTCGAAAGAGGATGCGCCTTACGGACACGCTTACGAACTCGAGGCCTCGGCCAATCAAATGTCCATCTACCACCAGAACCACGCCCTCTCTGACAGCAGGGGGGTGCTTGGGGGCGTGGCTGGGGGCGGGACTAATGGAAGGAGGGGCGGCGCTGTCGTGGGAGGCCCGGGAAGGACCGCTTCCAAAGCCCCTAAACGTAAGAATCAGAACATTGGCTACAAACTAGGCCACAGGAGGGCGCTGTTCGAAAAGAGGAAGAGACTTAGTGACTATGCGCTCATATTCGGCATGTTTGGCATTGTTGTCATGGTGATTGAGACCGAGCTGTCCTGGGGTGTCTACAGTAAGAGCTCCATGTATTCACTGGCGTTGAAGTGTCTTATCAGCCTTTCCACCGTCATTCTTCTTGGACTAATCATCGCTTACCATGCTCGAGAGGTGCAgCTCTTCGTCATTGACAACGGTGCGGACGACTGGCGGATCGCCATGACCATGGAGCGAGTGCTGCTTATCGCTCTGGAGCTGATCGTTTCTGCGGTTCACCCGGTGCCGGGGGACTTCAAGTTCATGTGGCGGGCGCGACTGGCCTTCTCCTACGCTCCCTCGCAGGCGGAGGCAGATCTAGACATGGTGCTGTCTGTACCCATGTTCCTTAGACTCTACCTCATCGCCCGAGTCATGCTGCTACATAGCAAGCTCTTCACCGACGCCTCCTCCCGCAGCATAGGGGCACTCAacaaggtGCATTTTAACACACGGTTTGTGATGAAGACCTTGATGACCATATGCCCGGGCACGGTGCTGCTGGTCTTCAGTATCTCCCTGTGGATCATTGCTGCCTGGACCGTaagagtgtgtgagagATACCATGACAACATGGATGTAACCAGCAATTTCCTTGGAGCCATGTGGTTGATCTCAATAACTTTTCTAACCATTGGATATGGGGATATGGTCCCCAACACATACTGTGGGAAAGGAGTCTGTCTCCTCACCGGCATCATGGGAGCCGGATGCACTGCTTTGGTGGTCGCTGTGGTCGCAAAAAAACTGGAATTAACCAAAGCCGAAAAACATGTACATAACTTCATGATGGACACCCAGCTGACAAAAAGGGTGAAAAATACGGCTGCTAATGTACTCAGGGAAACATGGCTaatctacaaacacacaaagcttGTGAAGAAGATTGACCATGCCAAGGTCCGGAAACATCAGCGCAAGTTTCTGCAGGCCATTCACCAGTACGTATTTTTTCTGCGACATTTAATCTCTATAATCTTCCTTTTGCCACATGCGCCGTCtggatttgtattttatatgagATCTGatataaatctacattttatgGTGCTTAAAACTGGATTTAGTTCAAGTTCTCGCTTTTCAATTTAGAGAATCTACTcacataaagttttttttttattttttatatggaGTTTTGGAAACGGAATCGAACCTTTTAGACTGAATAGACTGTACCTCGTATTTCTTTTCTAATTTATTGCCACTGCATTTCTAGATCTTGGGAGTTTCACCTGTCTGATCATGCGATGAAATCTTGATGCTGatgatgcagaaaataaaagaagttAGGGCTAGTGCACAAATTGAATATCAGACGTAATTGTGTGCATAAATAACCGAATGcaatttttggttaaaaatgactGTCTTGGCgagatgcttaaaaaaaacataatagttCTCACAATATTAATCCAGTGCATTGGAACTTAAAGTGTAAATGCAGCATGCCACTGCTTATTATCATGTTAATATTGATCAAACAGTAATTTTGGCAAAGAAGACTGCTGCTAattatttctttgttctttattGCTGACTGTCTATTTGTTTACTTAATTGAGATGTACTCAAAGGCTTTATGCCGttgctttatatttaatttcttaagtAAAAGAATGTGTTTCATTGCGTATTAGTTTATTCTTTGAAACTTTTATGGAGCGTAATGAAATATCTTTGTTATTGTGACATCCCTAGTGTCGACAGTAACTTGGATGCATGAGAGAGATGTTGTTTTCCCATATTGTTCAATATGATGAGAAAAANTAAGTTACACAAAAATGTTGCTTAAATGGCCTGGTGATGGAAATCGAATTACAgggctgttgttgttgtttttttgtttcaagtcagttgtaaaagttttttggTGTAGTGTGCAACttgaggtttttaaaaaatgtattctgtgtTCCATTTGTTTTGCCTTAAATCACTGCAGAGCTCAGAAGTAAGTCATGTCTTCTCTTTTTCCTTACATTTGGaaccctttttcatttttataagtcTTATTCAGCAATATCAACCAACATGATGAACATTGCAAACGTTTGAAGCTGGGCACCATTTTTATTAAGCATTGATATCCATTAATGGTGTTTGgatgaaatacatttacatgGTATACCAACCTGTTATGGTACTTGGAGGGAAAGGTTCTTCACATCTTCTCAGCTTCAAATTTATCAGATGCCACAATGTCAGAAATTCATTCATCTAGCCTGTACCAGATTTCCACAGAACCTCGCACTGCACTTTTAGTCTTTCAGATCCATTTAATCGCGTTAACATGCACAATCTGCTAGTCTGCTGGTCTGCAGTGTTTTCTTGCAAATACAAATCTATTGCAAATCATTCTTATGGAGATACTTATGgaaagagataccaaatgtgAATGCTATTAGACTGCATGAGAACTTTAGATTTAGTACTCGTTTCCTTTCCCTTGGTTGGTTCACGTTCAAACGGATAAAtcccataaaaataaataataataataaattctgtcatttactctgCATTGTGTTGTTCCAAATTCATACGGCTTCTTTAATTTAACAGACTGTTTTTGAGAACGTGAATGTTTATGAGAAAATTTCTGTGAATTGGTCATTTTAATCAGACTGAATTCAGTAAAATAAGTAGTTGACCGTTTAATAAATATCCTTACAGAAATTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU233937 lncRNA downstream 42429 14651424 ~ 14729662 (-) True G157966
TU233962 lncRNA downstream 69979 14684890 ~ 14702112 (-) False LOC122328902
TU233965 lncRNA downstream 69979 14684890 ~ 14702112 (-) False LOC122328902
TU233980 lncRNA downstream 80776 14684890 ~ 14691315 (-) True LOC122328902
TU233838 lncRNA downstream 311074 14373720 ~ 14461017 (-) False G157906
XR_006247854.1 lncRNA upstream 21487 14830264 ~ 14830849 (-) True LOC122328920
TU234007 lncRNA upstream 27584 14836361 ~ 14845678 (-) True G157999
TU234018 lncRNA upstream 238396 15047173 ~ 15048287 (-) False LOC122328913
TU233960 lncRNA upstream 355024 15163801 ~ 15301682 (-) False LOC122328902
XR_006247855.1 lncRNA upstream 379371 15188148 ~ 15189638 (-) True LOC122328921
XM_043225338.1 mRNA downstream 47866 14717745 ~ 14724225 (-) True LOC122329128
XM_043224382.1 mRNA downstream 92860 14672277 ~ 14679231 (-) True gdi1
XM_043224383.1 mRNA downstream 92861 14672277 ~ 14679230 (-) False gdi1
XM_043224565.1 mRNA downstream 135766 14624253 ~ 14636325 (-) True ada
XM_043224258.1 mRNA downstream 182469 14570347 ~ 14589622 (-) False fitm2
XM_043224968.1 mRNA upstream 97059 14905836 ~ 14933006 (-) True LOC122328901
XM_043224996.1 mRNA upstream 238375 15047152 ~ 15048344 (-) True LOC122328913
XM_043224998.1 mRNA upstream 240589 15049366 ~ 15073882 (-) True LOC122328916
XM_043224990.1 mRNA upstream 269809 15078586 ~ 15092247 (-) True LOC122328908
XM_043224975.1 mRNA upstream 356765 15165542 ~ 15185151 (-) False LOC122328902
TU233895 other downstream 182498 14581094 ~ 14589593 (-) True fitm2
TU233846 other downstream 441307 14326966 ~ 14330784 (-) True G157909
TU233040 other downstream 1489764 13280256 ~ 13282327 (-) True G157373
TU233029 other downstream 1554683 13141078 ~ 13217408 (-) True G157367
TU232479 other downstream 2847441 11922844 ~ 11924650 (-) True G156985
XR_006247853.1 other upstream 538640 15347417 ~ 15474377 (-) False magi3a
TU234273 other upstream 890492 15699269 ~ 15717250 (-) False LOC122329227
TU234274 other upstream 890492 15699269 ~ 15717250 (-) False LOC122329227
TU234366 other upstream 1199329 16008106 ~ 16008915 (-) True G158231
TU234433 other upstream 1335056 16143833 ~ 16169834 (-) True G158288

Expression Profile