RNA id: XM_043225010.1


Basic Information

Item Value
RNA id XM_043225010.1
length 8952
RNA type mRNA
GC content 0.46
exon number 27
gene id scn8aa
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 15814709 ~ 15860823 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AATGTCAGGCTGAGCAAATGAGCAAAAATGCACATGTGGACGGGTTCGAAGCGATCCGTTGTAATTAAGACGTTCAAAAGGCAATACATGCTTGGCTGCTTATTGATTGTAGGGTGGACGCAGGTTGCACGGGTGTGGTATGCtacattttcttgtttatgtTCCTCGCGAGCGGAAACCTTGCACAGCGTCGTTGAGACATCTCGCCGTTCTCTAAAAGCGCTTGGCGTTTTGCTCGGAAATGGGGTTTTGTGACCAAAAAGGTGTTGGCTGTGCGAGCATAAAAGGGTAAATACGACGATAGAGCGAAAAAAAACACCGCAGTATTTTCCGTTTTTCCTCCGCGGCTTCGGCCCGCTTTCGTGAAGGCGTCGAGGCTGTTCAGATACGTGCTTTTTCAGACGACATTGCTTTCTGAACCCGACTGAAATGTGACATCGTTTTGGAAAACGCAGAGATGCCGTTCGTGAAACCGTTGTGCTGTTGAGGATTTCGTGACCGAACATTGATGAAATCGAGAGCTGGCTGCCGTGGAGGGTACATAACAGGAGAAGAAGTTGCTGCAGGATGAAAACATGGCTGCACCCCTTCTTGCACCGCCAGGACCTGACAGCTTCAAATACTTTACCAGGGAATCTCTGTGTGAAATCGAGAAGCGCATTGCTGAGGAGAAAGCCAAGCCGCCACCTAAACCAGACAGCAGCTACCGCGACGATGACGACGAGAACAAGCCCAAGCCTAACGGTGACCTGGAGGCGGGCAAGAGTCTGCCCTTCATCTACGGGGACACCCCTCCTGGAATGGTGGCAACACCATTGGAAGATATTGATCCCTTCTACGTGAATAAGAAAACATTTATAGTCATAAATAAAGGGAAAACAATCTTCCGCTTTAGTGCCACACCTTCCCTGTACATGATAAGCCCTTTTAATCTCGCTAGGCGAATAGCGATTAAAATTTTGATACATTCAGTGTTCAGCATGTTCATTATGTGTACGATTTTGACCAACTGTGTGTTCATGACTTTTAGTAATCCTCCCGAGTGGTCCAAACAAGTAGAGTATACCTTCACTGGAATTTATACGTTTGAATCAGCTGTAAAAATCATTGCCCGTGGATTCTGTATAGATGACTTCACATTCCTTAGAGATCCATGGAACTGGCTGGATTTCATGGTCATCTCAATGGCATATGTAACAGAGTTTGTGGACCTGGGGAATGTATCTGCGCTGAGAACATTCAGAGTTCTCCGAGCATTGAAAACTATCTCTGTCATTCCAGGTCTGAAGACCATTGTTGGCGCTTTGATCCAGTCGGTGAAGAAGCTGTCAGATGTGATGATCCTCACCGTTTTCTGCCTCAGTGTCTTTGCCCTCATTGGTCTGCAGCTCTTCATGGGAAATCTGCGGCAAAAGTGTGTCATCTGGCCCATCAACATCACAGAAATATTCCAGGCCAATGGCACCCATGCATTCAACTGGGATGAGTACATCATGAATGATACCAATTTCTACTTCCTGCCAGACCAGCTGGATGCTCTTCTGTGTGGAAACAGCTCTGATTCAGGTCGCTGTCCTGAAGGCTACACATGCATGAAGGCTGGTCGCAATCCAAACTATGGGTACACCAGCTTTGACAGTTTTGGCTGGGCTTTCCTGGCTCTATTCCGCCTCATGACGCAAGACTTTTGGGAGAACTTGTACCAGCTGACCCTGAGAGCAGCGGGGAAGACCTACATGATTTTCTTTGTGCTGGTGATCTTTGTTGGCTCATTCTACCTTGTGAATTTGATCCTGGCTGTGGTGGCCATGGCATATGAAGAACAGAACCAGGCCACTATGGAAGAGGCGGAGCGAAAGGAGGCGGAGTTTAAAGCCATGCTGGAACAGCTGAAGAAACAGCAGGAGGATGCACAGGCTAATGCAATGGCGACATCGGCGGGGACGGTGTCTGAGGACGTGGTGGAGGATGATGGTGATGGAGGTGGGAACTTGTCCTGCAGCTCATCTGAGATGTCTAAGCTCAGCTCCAAGAGTGCCAAAGAGAGACGCAACCGCAAGAAGAAGTGGCGGCAGAAAGAGCAGGACAAGGAGAAAGGGGACAGTGAGAAGTTTGTCAAATCTGAATCAGATGATGGAAGCAGGAGGAGCAGATTTCGTTTCCCTGACAACCGTTTAGGACGTAGGAGTTCTATAATGAACCAGTCTCTGCTCAGCATCCCAGGTTCACCATTCCCTTCAAGACGCAACAGTAAGAGCAGCATCTTCAGCCGCTGTAAGGACGGAGGCTCGGAGAATGAGTTTGCAGATGATGAACACAGCACGGTTGAGGAGTATGATGAGCGACGCGATTCGTTCTTAAGCCCACAACGTCGCAGCAGCTACACGGGTTACTATGGCAAGCGCAACAGCACTGTGGATTGCAATGGAGTGGTCTCTCTCATCGGGCCGGGCCCTGGCGGACGCCTACTGCCTGAGGTGATAATAGATAAGGCAGCCACTGATGACAGCCCAACCACTGATCTCGAAATCAAGAAGAAACTCTCAGGCTCTCTAATGGTTTCTGTAGAGCAGCTTAACGCATCGTTTGGGCGCAAGGAGCGAGCTAACAGTGTCATGAGTGCGCTTACCAACACATTGGTTGAGGAATTGGAAGAGTCTCAGAGGAAGTGTCCACCATGCTGGTACAAATTTGCCAACACGTTTCTTATCTGGGAGTGCGGCCCTGTTTGGATGAGGGTTAAGGAGATCGTGAACCTGATCGTGATGGACCCTTTTGTAGATTTGGCTATCACTATCTGTATTGTGCTGAATACTCTCTTTATGGCCATGGAGCATTACCCTATGACGGATAATTTTAATCATGTGCTGTCTGTCGGAAACCTGGTGTTTACTGGTATCTTCACTGCCGAAATGTTTGCCAAACTGGTTGCAATGGACCCATACTACTATTTCCAGGAAGGCTGGAATATTTTTGATGGCTTTATCGTGAGCTTGAGTTTAATGGAGTTGGGCTTGGCTGATGTAGAAGGTCTTTCTGTGCTGAGATCATTCCGATtgCTGAGAGTTTTCAAACTGGCTAAGTCATGGCCCACCCTTAACATGCTGATAAAGATCATCGGCAACTCGGTGGGAGCTTTAGGAAACCTGACTCTGGTGTTGGCCATCATCGTCTTCATCTTCGCCGTGGTGGGCATGCAGTTGTTTGGGAAGAGCTATAAGGACTGTGTGTGTAAGATCGCTAGTGATTGCGAGCTGCCCCGCTGGCACATGAATGACTTCTTTCACTCATTTTTAATCGTCTTCCGGGTCTTATGTGGAGAGTGGATCGAGACCATGTGGGACTGTATGGAGGTGGCTGGACAGGCAATGTGTCTCATCGTCTTTATGATGGTCATGGTCATAGGAAACTTGGTGGTCTTGAATCTGTTCCTTGCCTTGCTGCTGAGCTCCTTCAGCGCAGACAACTTGGCAGCTTCCGATGATGACGGCGAGATGAACAACCTGCAGATTGCAGTTATTCGCATCAAGAAGGGAATTGCCTGGGTGAAGGTCAAAGTTCGAGAACTGGTCAACATCATCCTCAGGAGAAAGGTCACTGATGAGGCCAAGCCGCTAGACGACATGTACGACCGGAAGCTAAACTGCATCACCAATCACACTGGTGTGGACATTAGCCGTGACCTGGACTATCAGAAAAATGGCAACGGAACCACCAGTGGTATAGGCAGTAGCGTGGGCAAGTACATGATTGATGATGACCACATGTCCTTCATCCACAACCCCAACCTGACCGTATGTGTGCCCATTGCTGTGGGCGAGTCAGACTTTGAGAATCTTAACACAGAAGATTTCAGCAGCGAGTCTGAAGCAGAGGGCAGCAAAGAATTGGATGACATCAGCTCTTCAGAGGGAAGCACCATAGATATTAAACCAGAGGTAGAGGAAGCGGTGGTGGTGGAGGCAGTAGAGGAGTATGTTGACCCAGAACCTTGTTGGACTGAAGGTTGTGTGGCCCGCTACAAGTGTTGTGACGTGCCCATCACCGAGGGCTGGGGTAAGAGTTGGTGGTTCCTCCGGAAGACCTGCTATCTCATTGTGGAGCACAACTGGTTTGAAACTCTGATCATCTTTATGATCCTCCTCAGTAGTGGAGCATTGGCTTTTGAGGATGTGTACATTGAACAGAGGAAGACAATCCGTATTATTCTGGAGTACGCTGACAAGGTCTTTACCTACATCTTCATATTGGAGATGTTGTTAAAGTGGGTGGCCTACGGTTTTGTCAAGTATTTCACCAACGCCTGGTGCTGGCTGGATTTCTTCATTGTTGACGTGTCTATAGTCAGCCTTATAGCTAATGCGCTGGGCTACTCCGAACTAGGGCCCATTAAATCACTCAGGACACTAAGGGCCCTGAGACCCCTCAGAGCATTGTCACGTTTTGAAGGGATGAGGGTGGTAGTCAACGCCTTGGTGGGTGCCATCCCTTCCATTATGAATGTCTTGCTGGTTTGCCTCATCTTTTGGCTGATTTTCAGTATCATGGGTGTCAACCTGTTTGCGGGAAAGTACTACTACTGCTACAATGCAACTGAAAAGGCAATGTTCGAAATTGATGTAGTCAACAACAGATCAGAGTGCCAAGCATTGATAAATGATAACTACACAGAGGTGCGCTGGAGAAACGTCAAAATCAACTTTGACAATGTGGGTGCTGGTTACTTGGCTCTACTGCAAGTGGCAACGTTTAAAGGGTGGATGGATATCATGTATGCAGCAATTGATTCACGAAAGGTGGAAGACCAACCAAAGTATGAGGACAACATCTACATGTACATCTACTTTGTTATCTTCATTATATTTGGCTCTTTCTTCACACTCAACCTCTTCATTGGTGTCATCATTGATAACTTCAACCAGCAGAAGAAAAAGTTTGGAGGGCAGGATATCTTTATGACAGAGGAACAAAAGAAGTACTACAATGCTATGAAGAAGCTTGGCTCAAAGAAACCTCAGAAACCCATACCCAGACCCCAGAACAAGCTCCAGGGCATGGTGTTTGACTTTGTGACACAGCAGGTCTTTGATATCTCAATCATGATCCTCATCTGTTTGAATATGGTCACCATGATGGTTGAGACAGATGATCAGTCACAGGAGACTGAAAACATTCTGTACTGGGTTAACTTCATTTTCATCGTGGCCTTCACTTCTGAGTTCGTCCTGAAGCTCTTTGCACTGCGTCATTACTACTTTACCAATGGCTGGAACATCTTTGACTGTGTTGTGGTCATTCTCTCTATCGTGGGTATGTTCCTGGCTGACCTGATCGAGAAGTACTTTGTGTCACCAACGTTGTTCAGGGTTATCCGTCTGGCTCGAATCGGACGTATCTTGCGTCTGATCAAAGGAGCAAAGGGCATTCGGACTTTACTGTTTGCCCTGATGATGTCACTGCCGGCCCTGTTCAATATCGGCCTTCTGCTGTTCTTGGTCATGTTCATCTTTTCTATCTTTGGCATGTCAAACTTTGCCTACGTAAAGCGGGAATCTGGTATAGATGACTTGTataattttgaaacatttggGAATAGCATGATCTGCCTGTTCATGATAACCACCTCAGCAGGGTGGGATGGCCTTCTTGCTCCTATTCTCAACTACCCACCGGATTGTGACCCGAATAAGGAGAATCCAGGTACCACAGTGAAAGGTGACTGCGGAAACCCTTCAGTGGGCATCTTCTTCTTCGTCATGTACATCATAGTCTCGTTCCTTATTGTGGTGAACATGTACATCGCCATCATCCTGGAGAACTTTAGCGTCGCCACAGAGGAAAGCGCTGATCCACTTTGCGAGGATGACTTTGAGTCCTTCTATGAAATCTGGGAAAAGTTTGACCCCACTGCCTCCCAGTTCATCACCTTCGCTAAGCTGGGTGACTTTGCTGACACTCTGGAGCACCCGCTGCGCGTTCCCAAGCCCAACACTATAGAGCTGATTGCTATGGACCTGCCTATGGTGAGTGGCGATCGTATTCACTGCCTAGATATCCTGTTTGCCTTCACCAAACGCGTGTTGGGTGACAGCGGTGACCTGGACATGATGCGGCAACAGATGGAGGAACGATTCATTGCTGCCAATCCTTCCAAAGTGTCTTTTGAGCCCATCACCACCACTCTGCGCCGAAAGCAAGAGCACATGTCTGCCTCGGTCATTCAGCGTGCTTACCGTGCTTATCTTATTCGGAGAGGCTTCATCTGCAAGCGCTTGCTCAGCAGCAGCAGGCTGGAGAATGGCGGGACCAATCAGGACAAGAAAGAGGGCACGCCTTCTACTGCCTCGCTGCCGTCCTACGACAGTGTGACCAAACCTGAGAAGGAGAACCTGGATGAGAGCGACAGCAAGggcaaaaaaggcaaaaaccaaaaagaggTCAAGGAATCCAAGTGTTAGGAATGATGGAGACTGAACTATCAAGTCGAGACTAAAACTATCTATTCCAACAAATGTATAGAAAAtcatttgcaacaaaaaaaaacacagaactcTTTGGGTAACAAGGTTGTTTACAGACAACAAATGCACCGGCAAAGCAGCTTGGTTTTTACAGATTTAATGATGACCAAACCAACCTATGAGCTTACTGTCTTAACATTTGTGCTCAGTGACCAAGACTTTACTGTTACCAACTGCAGCCGAAAGGCGCTTGCAAAGAGAAGCAAAATATTGACCTATGGCAGACATCTTTGATAGGGACCACCTGCCAAAGGACAAAGAAGTACAAAGCAAGCTCATAAGATGGATTCCTTTGCACCACCATGTGTGGAGTTCAGCATTCCTCTGCTATGGACATCCCTTTCAAACACTACACTGCCGAAATCCCACGGAAACCTCCCACTTATCCCAGGAGGATTCTGGGACTTTGTATTTTAACCATAGGAGAACCAGTAATAACGACGTTAACTCAATCATGTGGAGTGTCCGCcgtaaaaaagagaaacaacaaaaaaaaacaaaaaacaaagcagaaacaTTATGCAAGGGTTTTCAGTTGTTGTGATGAATATCTCACCTTATTTGACCCACAAAAAGTAGGGAAAAAAGTTCAGCCCATGTCATTCATTTCGTCATCATATCTTTGTTATACTTGcagaaaaaagacattttatacaTGGGCTTTCACATCGATATTGGGTTGGGGGATTTATCAGGGTTTTGACTTGGGCTAAAGGGGACTTACTCAGACCGAGTTcctggtaaataaataaataattgtgctcGTTCAATGCATAGAAATGACTTGCATGGTGGCATGTTTTGATCAGGAATCATGCATGTATAATCATAGTCCACTTGACACTGCTACTCAAACCACATCAGTGGCTTGACCATACATTCGATACTGTCCACTAGTTATCAAATTAAATAGATATAGCTGGGAAATGATTGGTCAATAGCAACATATTTAACTACTGGCTATGACAAGTATATTTATACTTACCCCTCGTAAAGCTTGCTTCCTGATTAACCAATTCTCACACCATGCGTCATGTGCGTATTTTAAGGTGGTCGATCAAAGCTCCTTCGTCCTTCATTTGGATATACAATGTGGCAACTGCACATTCGTTCACCCGTAGGGGTGTTTCACTGCCCTGGACTTGAGGAGAATTTGGGATGACACTTTGGAGAAACAATTTCACTCGAATCAAATCTTGGGTTCATAAACCTTGATTTGCTTTTTTGCACCAGCAATATGATTCAACTGCCCCTCAATGTGCAGCTGAGGCTCCAGTAGGGCCTTCAATAGATCTTCAAAAGGTACAGACACCATGCCATTTAAACCTTTACAATGCTTTGTCAGGCCTCGATGGGAGGCCGTCTCTTCGATTTTCCTGGAGGTACTTGTCTTCATGTCAGCACATCCTCATGTTTACCATTTAAAGAGGTTGTCAGTTGTGTTAGCatcttgttttgtcttaaagATGTTGAAGAAAGCACTCGAGTAGCCATTTTGAATGCATCCTGTGTAGACATTTAATAGCTTTCTCCCTGTTGAATGAAAAAAGTGACTGATGTACAGTATATTTGGTATAGCTTGGATTATACATGTAAACTGGCCTTACACAGCAGGAAAACAAGGAAGGTGGCACTTTTAGAATGAAGTGATGGGTACATGTGTTGTCTGATagcatgcaatttattttagccaGTGGTGGTGATGCTACGAATTTGTTCGTTGCTACCTCTTGAGCAAACTGCCATCCCTTCTTGCTCTGGGTGCAATAGAAATTGTTCGGATTTGCAGCCGTAATTCTTTCGTTTACAGTATTTtgagtaatgttttattacctCTCCTAATTGAGAAGAATTAATGCTAATTCTGGTGTGGGCTAGCCCAGTGTGAGGTGTTATGGTGGATCACAGATAACGTAATACAATGCTAATACATAGGTATAGGACTATGAGATCATAGAACATCTCTGACCGCTGGGTCAGCAGACGTAGGCCACCAGAGAGCCAGAGTGCGGGAGAGCACACCAGTTTACAAACCCACTTCCTCTACTACTCAGACCTGTAGGTCTGCTTACTGCCTGAGATCTGTAAATCAGTGTGGGTGCTGTGGACTTAAACCAAATGAAGCCTGGTGAAACACTTAGACTACCGTGTAGTTTTCCCCCCTAACTCCCATTTTAGTTcagatgtgaaataaaaaatcacTCTCACTGACTGTATGACAAGTTAATGTATCATTCAATGTACAGGAGGGGGCTATGATGTACATGGCACAATTGCTGAAAAGAATGAACTTTTTGAGGAAAACTATAAgcattgtaatatattattttcttttaaatggcaTGCTTTGTTGTGGGTTTTGTAAATACAGAATTTTAAAGAATTACTGCtattaatctaataataaattataacaatGATATAGAATGGC

Function

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0007638 mechanosensory behavior biological_process
GO:0008045 motor neuron axon guidance biological_process
GO:0008345 larval locomotory behavior biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0001518 voltage-gated sodium channel complex cellular_component
GO:0005248 voltage-gated sodium channel activity molecular_function

KEGG:

id description
K04840 SCN8A, NAV1.6; voltage-gated sodium channel type VIII alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234328 lncRNA downstream 1782 15812281 ~ 15812927 (-) True G158208
TU234308 lncRNA downstream 25378 15728154 ~ 15789331 (-) True G158198
XR_006247888.1 lncRNA downstream 97465 15699771 ~ 15717244 (-) False LOC122329227
XR_006247887.1 lncRNA downstream 97465 15699771 ~ 15717244 (-) False LOC122329227
TU234287 lncRNA downstream 132837 15680886 ~ 15681872 (-) True G158188
TU234357 lncRNA upstream 104483 15964753 ~ 15965763 (-) True G158227
TU234368 lncRNA upstream 147836 16008106 ~ 16008915 (-) False G158231
TU234426 lncRNA upstream 241355 16101625 ~ 16102214 (-) True G158282
TU234428 lncRNA upstream 257611 16117881 ~ 16118214 (-) True G158284
TU234492 lncRNA upstream 386746 16247016 ~ 16247293 (-) True G158333
XM_043224131.1 mRNA downstream 6185 15759885 ~ 15808524 (-) True fignl2
XM_043224130.1 mRNA downstream 58643 15737601 ~ 15756066 (-) False stat6
XM_043224128.1 mRNA downstream 58643 15737601 ~ 15756066 (-) False stat6
XM_043224129.1 mRNA downstream 58713 15737601 ~ 15755996 (-) True stat6
XM_043225122.1 mRNA downstream 90708 15719258 ~ 15724001 (-) True dtx3
XM_043225016.1 mRNA upstream 8070 15868340 ~ 15905969 (-) False dip2ba
XM_043225014.1 mRNA upstream 8070 15868340 ~ 15905969 (-) False dip2ba
XM_043225015.1 mRNA upstream 8070 15868340 ~ 15905969 (-) False dip2ba
XM_043225013.1 mRNA upstream 8070 15868340 ~ 15905969 (-) True dip2ba
XM_043225277.1 mRNA upstream 46328 15906598 ~ 15928803 (-) False atf7a
TU234273 other downstream 97459 15699269 ~ 15717250 (-) False LOC122329227
TU234274 other downstream 97459 15699269 ~ 15717250 (-) False LOC122329227
XR_006247853.1 other downstream 340332 15347417 ~ 15474377 (-) False magi3a
TU233895 other downstream 1225116 14581094 ~ 14589593 (-) True fitm2
TU233846 other downstream 1483925 14326966 ~ 14330784 (-) True G157909
TU234366 other upstream 147836 16008106 ~ 16008915 (-) True G158231
TU234433 other upstream 283563 16143833 ~ 16169834 (-) True G158288
TU234490 other upstream 380540 16240810 ~ 16243395 (-) True tac3a
TU234495 other upstream 497382 16357652 ~ 16358705 (-) False G158336
TU234864 other upstream 1316382 17176652 ~ 17179779 (-) False slc48a1a

Expression Profile