RNA id: XM_043225016.1


Basic Information

Item Value
RNA id XM_043225016.1
length 6377
RNA type mRNA
GC content 0.50
exon number 38
gene id dip2ba
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 15868340 ~ 15905969 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGCACAGTGCCGTTGGTGAGTTCTCACAGCATGGCGGAAGGAGTAGTTGTCCGGATGGATTGTTACTCACCTTTTAATTCATGTCTTCTGTCTTGACGGGAGGATTTTTGGCTATCGAAACGCATTTCATCGTACTTAAAACAACTTCAGCGTATTCTCACGACGATGGCAGACCGCGGTGTGGATTTGGCAGCTCTAACGTTACCGAAAGAGGTTAGAGAGCAGTTGGCGGAGTTGGAGCTCGAGCTGTCTGAAGGTGACATCACACAGAAGGGCTATGAAAAGAAACGAGCTAAACTTCTCGCACCGTTTGTACCACAGACCCAAAATTTGGATGTGGGCCTTTCTTCAGACCCTACCTCTACCCCTAATGCCGTCCCTGTTGCCGCCCCACGGCAACACCGAGCTCACCGCAGCGGGGGAACACGTGATGACCGCTACCGGTCAGATATCCACACAGAGGCCGTGCAGGCAGCTCTGGCCAGGCATAAAGAGGAGAAGATGGCCCTTCCCATGCCCACTAAGCGTCGTTCAGCCTTCGTCCAGTCTCCTGCGGAAAACTGCACGCCTCCCGATACATCTTCGGCGTCAGAGGACGAGGGCTCCCTGCGGAGGCGTCAGGCCGCAATCAGTGCAATGCTGGCTCAAAATCTCCAGAGTCCCGAGTACTGGATCAACCGCTCTGTCCAGGGCTCTtccacctcctcctctgccTCCTCCACCCTCTCTCATGGAGACGGCAAGACTCACAACCACAGCCACAGCCAGGGGCAGACCAGCGTGCTTGCTGACGTGCTGGCACACACCCGCATAGAGAGCAGCAGCGTTCCGCCTGACGTCACGTCCACAGTGCCTCAGGACAGGAACTCCAGAGTGGACCTGCCACCCAACATCGCAGTGAGGGGCATGAGCCGCGGCCAGAGCCGCTCCAGCATGATGGACACTGCCGGCGGTGTTCCAGCACACAGTCGTGTCTCCACCAAAATACAACAGCTGCTCAACACGTTAAAGAGACCCAAACGGCCTCCGCTCAGCGAGTTCTTCCTGGATGACTCTGAAGAGATTGTTGAAGTTCCCCAGCCAGATCCCAACACACCCAGGCCAGAGGGCCGGCAGATCATTCCAGTAAAGGGGGAGCCACTAGGGGTGGTCAGTAACTGGCCTCCAGCTCTGCAGGCGGCACTGGCACGTTGGGGAGCCACACAGGCCAAGAGTCCAGCCCTTACTGCCTTGGATATCACTGGCAAACCACTCTACACCCTTACCTATGGTAAACTGTGGAGTCGCAGTCTGAAGTTGGCGTACACTCTGTTAAACAAACTTGGCACCAAAAATGAACCAGTTCTGAAACCTGGAGATAGAGTGGCATTAGTTTATCCCAACAGTGACCCTGGGATGTTCTGGGTGGCCTTTTATGGGTGCCTTCTCGCCGAGGTCATTCCTGTCCCGATAGAGGTGCCTTTATCTCGGAAGGATGCAGGAAGTCAGCAGATAGGCTTTTTATTGGGCAGCTGCGGCGTGGGTCTCGCTCTCACTAGTGAAGTGTGTCTAAAAGGGCTTCCAAAGACCCAGAATGGagaaataatgcaatttaaagGATGGCCTCGGCTCAAATGGGTGGTCACTGATACCAAGTATCTTACCAAACCCTCCAAGGACTGGCAGCCGCACATACCTACTGCAAACACTGATACTGCTTACATAGAGtacAAGGCCTCTAAGGAGGGTACAGTGATGGGAGTGGCTGTATCGAAGATCTCCATGCTGACACACTGTCAGGCTCTAACGCAGGCCTGTAATTACTGTGAAGGAGAAACACTAGTTAATGTCCTGGATTTCAAGAAAGACTCAGGTCTTTGGCATGGAGTTCTGACAAGTGTCATGAACAGGATCCACACTATTAGTGTTCCATACTCTGTCATGAAGGCTTGTCCGCTGTCCTGGGTGCAGAGAGTTCATGTTCACAAAGCTCGTGTGGCCTTGGTGAAATGTAGAGATCTGCACTGGGCTATGATGGCTCACAGAGATCAGAAAGACACCAATCTGTCTTCCCTGCGCATGCTGATTGTAGCTGACGGAGCCAATCCTTGGTCTGTCTCTTCATGTGATGCATTCCTCAACGTGTTTCAGTCTCATGGGTTGAAACCTGAGATGATCTGTCCATGTGCTTCCTCTCCTGAGGCCATGACGGTCGCTATTCGCAGGCCTGGTGTTCAGGGCGCTCCGCTCCCTGCCAGGGCGATTCTGTCGATGGCAGGACTCAGTCACGGGGTGATTCGGGTCAACACTGAGGATAAGAACTCTGCCCTTACTGTGCAAGATGTAGGACATGTCATGCCTGGAGCGCTGATGTGTATTGTAAAGCCTGATGGGCCGCCCATGCTCTGTAAGACTGATGAGATCGGAGAGATAGTTCTGAACTCACGCGCTGGAGGCACAATGTACTACGGCCTACCCGGGGTGACCAAGAACACTTTTGAGGTAATTCCTGTAAACTCAGGTGGTACCCCTATTGGAGACGTTCCCTTCACACGCACTGGACTGTTGGGTTTTGTGGGTCCGGGAAGTTTAGTGTTTGTGGTTGGAAAGATAGAGGGTCTGCTTTCAGTCAGTGGGCGCAGACACAATGCAGACGACCTGGTGGCAACAGCTCTGGCTGTGGAACCAGTCAAAACTGTCTACAGAGGGAGAATTGCTGTGTTCTCTGTCACCGTTTTCTATGATGAGCGAATAGTGATTGTGGCAGAGCAGAGGCCTGATGCCAATGAAGAGGACAGTTTCCAGTGGATGAGTAGAGTTCTACAGGCGATAGACAGTATCCACCAGGTGGGCCTGTACTGTTTGGCCCTAGTCCCTGCTAACACGTTACCCAAAACTCCTCTGGGGGGTATTCATGTCTCTGAGACCAAGCAGCACTTTCTGGAGGGATCTCTGCACCCTTGCAATATTCTGATGTGCCCTCATACGTGTGTGACCAACCTCCCAAAACCCAGGCAGAAGCAACCAGTGGGAGTCGGTCCTGCCTCCATTATGGTGGGCAACCTGGTGGCAGGAAAGAGGATCGCACAGGCTAGTGGGAGAGATCTTGGGCTCATTGATGATCAAGAGCAATCCAGAAAGCATCAGTTCCTGTCTGAAGCCCTGCAGTGGAGGGCACAGACGGATCCTGATCATGTCCTCTATATGCTGCTGAATGCAAAGGGTGTAGCAGTGAGCACAGCCACGTGTTCTCAACTGCACAAGCGAGCAGAGAAGATCACTGCAGCTTTGCTGGAAAGAGGAGGAATTAACACCGGAGACAACGTAGTACTGCTTTATCCTCCCGgcATAGACTTAATTGCCTCCTTTTATGGCTGTCTGTATGCTGGCTGCATTCCGGTCACCGTCAGGCCTCCTCATCCACAGAACCTTGCCGCCACTCTCCCCACAGTCCGGATGATCATAGATGTGAGCAAAGCTGCCTGCATCCTCACGACTCAGACCCTGATGAAGACTTTGCGGTCTAAAGAAGCGGCAGCCAGCGTGAATGTGAAGACTTGGCCGAATATCATAGACACGgATGATCTTCCCAGGAAACGGCCTTCGCACATCTATAAACCTCCCACTGCAGAAATGTTGGCCTACCTGGACTTCAGTGTGTCCACCACGGGAATGCTGACTGGAGTTAAGATATCTCACTCAGCAGTCAATGCTCTGTGTCGGTCCATCAAACTGCAGTGTGAGCTGTACTCTTCCAGACAAATTGCCATCTGCATGGACCCCTACTGTGGCCTGGGCTTTGTGCTGTGGTGTATGTCTAGTGTTTATTCAGGTCACCAGTCAATCCTGATCCCTCCCATGGAGTTGGAGACGTCTCTGCCCCTGTGGTTGAGCACGCTCAGTCAGTATAAGATCAGAGACACCTTCTGTTCCTACTCGGTCATGGAGCTCTGCACCAAGGGTCTCGGCACACAGACTGAAGCTCTGAAGGCGCGAGGCGTGAACCTCTCATGTGTAAGGAGCTGTGTCGTCATAGCCGAAGAGAGGCCTCGTTTGGCGCTCACGCAGTCTTTCTCCAAGCTCTTCAAAGACCTGGGCCTGTCTCCACGCGCAGTGAGCACAGCTTTCGGTGCCAGAGTCAACCTGgccatctgtctacagGGCACTGCTGGTCCAGACCCGTCCACTGTTTATGTAGACATGAAGTCACTCCGTCATGACAGAGTGAGGCTGGTGGAGAGAGGAGCTCCTCAGAGTCTGCCGCTGATGGAGTCTGGGACTATTCTTCCTGGAGTGAGAGTAATCATTGTGAACCCAGAGACGAGAGGACCATTAGGAGACTCTCATCTAGGCGAGatCTGGGTGAGCAGTCCCCATAACGCCAGTGGTTATTATACCATCTACGGTGAGGAGAGCCTGCAGGCAGACCACTTCAACACACGGCTGAGCTTTGGAGACACTGAAACGCTCTGGGCCAGAACTGGATATCTGGGATTTGTCAGGAGGACAGAGCTACTGGATGCAAGTGGAGATCGCCACGATGCTCTGTTTGTGGTGGGCTCACTCGATGAAACACTGGAGTTGCGAGGTTTGCGTTATCATCCCATTGACATTGAGACCTCTGTATCTCGGGCGCACCGCAGCATCGCTGAGAGTGCCGTCTTTACATGGACCAACCTTCTGGTGGTTGTAGTGGAGCTCAGTGGATCTGAGCAGGAAGCTCTCGATTTGGTTCCCCTGGTCACTAATGTAGTTCTGAAAGAGCATCACCTCATAGTTGGTGTGGTGGTCATCGTGGACCCCGGCGTCGTCCCTATCAACTCGCGGGGCGAGAAGCAACGCATGCACCTGCGCGACTCCTTCCTGGCCGACCAGCTGGACCCCATCTACGTTGCGTACAACATGTGAGCGTGAACTAACGTGTTTAAAGCTCAACATGGCACCCAAAGAACCACTCACAATGCAGCCGTTCCTCTTTGCCGTCAAAACGCAACATAGAGGAAGCAGCTGGCTAGTCCTCTTTCTGCCCCTGCGCTGAGccttgtacatatttttatgtttttttttttttatgtgattgtGGCCTGTTCGACCAATGGCGGTCACCCGGCTCAAGCCATCCAACCTTCTCTGGACATCCAGGAGGGTGGTGCTCTTCTTTTAGAACATATTTCTGCCCTTTAAAACAGGTGAAGCCACATCTTCGCCAGTCGCATTGACTTCGATGCCACTTCCGATTTGCCTCTTCCATAGAGCAGCGCTTGCTCTTGCAGTTAGACCCGAGGGACTAACACAAAGCTTTTCTGCGCACTTTATCTCCTCTCGTAGCCAGAGGAGTGTCCCTTCGGTTTTCATTCTGGAAGTGCTAACTTAGTTTTATGGATCAACAGTATCAccagcaaaacaaacatatcttcttttattcaaaactgctagtcattttaatggttttaaaataaatgcgcTGCATTTTATTAGTGCGTGaacaggttttatttttactcacaTTGTCAACCGTAACTGTAAGAACTGGAGTGAGGAGGGGTTTGTGGCATTATTCTCACTCAAAGCACAACTATTTTAACATAGTACGTTCGCAACTTGACATCTATATGCATTAAACATGTATATTGAGGGTGACAGAAAAGTTCAAAGATGAAGACGGTTCCATGCCTTAtgaatgtgtgtttctgtctttattttgatttgaggTGACTGGACAGGTAAAGAGATCGAAGGTGTTTGTATGTAGACTATATATTGTAGTGTCTCACTGGTGTTACTGTATAAACAAATGGACCTCGTTATCTGGTCCACCAAAAAACTTGACTGATCTTTCATGCTTGATGAATCATACTTTAGACTCAAGGTCATGATGCagaaacaaaatactttttacacATTGCATCCGTCACAAAAAATGGATTGTTTTCATGGTTCACACTGACACACTCGGGTCATCGAGTGGCAGACAATAACAAACCTTCAgagttttttcagtgttttggatgcgtgcgtgcgcgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagtgtgtgagcgtgctAGAAAGGAAAAAGGGTGTTTTAACCGACATGGAAAAAGAGAATGTGAGCTAAGAGAGGAAATATCTTTTCTATCTTAATACAGTAACATTTATTAGCACCTAACACGTTTATTTCAAAATGGCCTTAGATATCAAATTTTTCTTTATTCCTGCAGATTGTTTACATGTGAAATTCTGTGCAGCTCTTTTCTTTAACAATGCACACATTCTCATAActgttctttttgtatttttaattcagttcttAATTGTCAAAATATTGAGTGTGTTGGTGCAAAatttataaagttttatgttaattaaatttattgttGTCATCA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0008134 transcription factor binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234328 lncRNA downstream 55413 15812281 ~ 15812927 (-) True G158208
TU234308 lncRNA downstream 79009 15728154 ~ 15789331 (-) True G158198
XR_006247888.1 lncRNA downstream 151096 15699771 ~ 15717244 (-) False LOC122329227
XR_006247887.1 lncRNA downstream 151096 15699771 ~ 15717244 (-) False LOC122329227
TU234287 lncRNA downstream 186468 15680886 ~ 15681872 (-) True G158188
TU234357 lncRNA upstream 58784 15964753 ~ 15965763 (-) True G158227
TU234368 lncRNA upstream 102137 16008106 ~ 16008915 (-) False G158231
TU234426 lncRNA upstream 195656 16101625 ~ 16102214 (-) True G158282
TU234428 lncRNA upstream 211912 16117881 ~ 16118214 (-) True G158284
TU234492 lncRNA upstream 341047 16247016 ~ 16247293 (-) True G158333
XM_043225011.1 mRNA downstream 7517 15814709 ~ 15860823 (-) False scn8aa
XM_043225006.1 mRNA downstream 7517 15814709 ~ 15860823 (-) False scn8aa
XM_043225012.1 mRNA downstream 7517 15814709 ~ 15860823 (-) False scn8aa
XM_043225007.1 mRNA downstream 7517 15814709 ~ 15860823 (-) False scn8aa
XM_043225010.1 mRNA downstream 8070 15814709 ~ 15860270 (-) True scn8aa
XM_043225277.1 mRNA upstream 629 15906598 ~ 15928803 (-) False atf7a
XM_043225276.1 mRNA upstream 629 15906598 ~ 15928803 (-) True atf7a
XM_043225275.1 mRNA upstream 629 15906598 ~ 15920593 (-) False atf7a
XM_043224743.1 mRNA upstream 23904 15929873 ~ 15934325 (-) False asb8
XM_043224742.1 mRNA upstream 23904 15929873 ~ 15934324 (-) True asb8
TU234273 other downstream 151090 15699269 ~ 15717250 (-) False LOC122329227
TU234274 other downstream 151090 15699269 ~ 15717250 (-) False LOC122329227
XR_006247853.1 other downstream 393963 15347417 ~ 15474377 (-) False magi3a
TU233895 other downstream 1278747 14581094 ~ 14589593 (-) True fitm2
TU233846 other downstream 1537556 14326966 ~ 14330784 (-) True G157909
TU234366 other upstream 102137 16008106 ~ 16008915 (-) True G158231
TU234433 other upstream 237864 16143833 ~ 16169834 (-) True G158288
TU234490 other upstream 334841 16240810 ~ 16243395 (-) True tac3a
TU234495 other upstream 451683 16357652 ~ 16358705 (-) False G158336
TU234864 other upstream 1270683 17176652 ~ 17179779 (-) False slc48a1a

Expression Profile