RNA id: XM_043225019.1


Basic Information

Item Value
RNA id XM_043225019.1
length 3990
RNA type mRNA
GC content 0.44
exon number 3
gene id pard6b
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11490166 ~ 11507285 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gagagagagagagagagaggcgcgCGCGCTGGGGCAGAGTTTAGAGCACGTTCAGTTGACAGGCGTCGCCGTTGCTACTCGATTCCGATAACAACACAAGCGAAGGCACGGAGCTGTCGCGAGATACGCGCCTTTAACTGGATTAAGCCGAGAAAAGCCGTTTTGGACGGACCGAGCCCAAGGCGGATGAGCGCAGCCCGCGGGAGGGCAAGTGTGTTTCTGCGGCGGGGTCCAGTCAGCGAAAGATGAACAAAAACCACCGAGTGCCGAGCAACCGAACTCTGAACGCCGTGGAGGTGAAGAGCAAGTTTGGGGCAGAATTTAGGCGTTTCTCTTTGGACCGGTCCAAGCCGGGGCGCTTTGATGAGTTCTATGGCTTGCTGCAGCACGTGCACCGGATCCCCAACGTCGATCTGCTTGTGGGCTACGCCGATGTCCACGGGGACCTGCTGCCAATCAACAACGATGACAACTACCATAAAGCGATCTCCATGGCGGCGCCCCTTCTCCGTCTCTTCTTGCAGCGGAAAGCAGAGGAGGCCGATTACTCTGCATTCGGCGCGGACACTGTGACCCGTAAGAAGACCCCTGCAGCGCTTGCAGCCGTCCTCCTTCGGCCGGACACCAACAAGAAGAAACCTCCTATCATCATCAGCCTGCCCAAAGATTTCCGGCCAGTGTCCTCCATCATCGACGTAGACATCCTCCCAGAGACCCACCGCCGCGTCCGCCTCTACAAGCACGGTCAGGAGAAACCCTTGGGCTTCTACATTCGCGACGGATCCAGCGTCCGTGTTACTCCCCAAGGCCTGGAAAAGGTCCCGGGCATCTTCATCTCCCGCATGGTCCCCGGAGGCCTGGCGGAGAGCACGGGACTGCTGGCCGTCAACGACGAGGTGCTCGAAGTCAACGGCATCGAGGTGAGTGGAAAGTCTTTGGACCAAGTAACGGACATGATGATCGCTAACAGCCACAACCTCATTATAACCGTCAAACCGGCCAATCAGCGCAATAACGTGGTACGCAGCAGCGGAGGCGGCAGCTCAGGGCGATCTTCGGACAGCAGCACCAGTTTTTATGGTTACTCGACACCGGGTTCGATGGCGATGACCCCATCCCATATTATCCAGAACTATGAGCCGGACGAGGAgagcgaggaggaggaggaggatctTGTGATCGAGGCGGACGGAGGGGCTAAACTTATTCCGCAGGCAGGGGCACGGGCGACGGCCAGCACCAGCATGCCCGTCCTGCCCAGATACGAGCCCCACCTCGACCTCCGCCCCTCAAATGGTACCATGGCAAGCAGCGTGAGCGTGGGTTCTCTGAATGCCCGTGACAGGGGTGTAGAAGGGCGAAATCTTGAGGAGGAGGGCACAGTCATtacactgtaaacacacacacacacagcatataatcacacacacatgccagtACGTACTCTTGTGTGCCATAGGACTGAAAATGCATGTCCAGGACCAAAAGAGAAGACGCAGCACTTCTCTGTAACCACCAGGTAGTTCTTATCATCAAACCCATGGAGAGCAGCACAGCACCAAAAATAGCTGCTTCTGGAGTAATAATGAACTTCCTGAGTCAGTGCGATTGAATGAATGCAGACGGCGCTGTATGAGTCATGACaatctttttttactttgacaACCACTCCCTTCAGAGCCACGAGGCTTGAGCGTTATCAGAGAACAAAGTACAATGGGTTTTACCCATCCTCtgtgttaccatggtaactgAGTCTGAGCTACAGAACTTCAGACAGAACTGAAATATGCTCTTCATCCCTTTCCCGTCTGCAACACTAATACTCTCAGCTTACCGATTCTTTGTGGTTTTCAAGGGAATCGTGAACCTTTTGAGGGGCTTGAGTGAATGTTTTGGAGAAATTTTCTCGTGAGTGGACAGTTGTAGACTGCTGCAGATGTCTTTTATTATCTCAGAAGTTTTTAATCATAGccaaaaagacaaatgaataatgtcatatttttcaTACTGATATGTTTTATTGGTATCGCTTATATTTCTTTATGACAAGGGCTATCATCCTGCTCTTTGCTACCTGTGGTTTATTTTACCCATTAATCTTTACTTGATAACCCTATCTGGGGACTTGGAATACATAATTATCATcaataatgtttcaaaagagTGCTCTGATGTGGACACTTGGATGTTTCATTTATGAAGAGCGTCTCTACTGTCACACTTTTCACAAAGGTTCAGCTCGTTAACATTAGATCagccaaaaatgtcattttatatgtttctttcttctgtggcgCATAAAAGCATATATTCATAGATATTTTCATACACAAAGAATTCAGgtaaatgacaaaattgactttttggggggtgaactatacagtacatttaatgcattaggCATCataactaactattaataatatttttacaatgttaaaGTTCATTTCTGCATACActaaaattgactttttaacattttaaagtagtttaaataaacattagatAGTGTATTATGAGTCATGAACAATAGTATATGTATGAATCAACAATTACCAGAAtcaataaaatctgtaaaaatggCACATAAcgcattaatgttaacaaattgaACCTCTTTAAAGTGTTACCGCTAACAGTAAGTGTTGCAGTCAAATTATGGAAAAACAACTCTTATTTTGTAGTGAATTACTATTGAATATATACCAAAATATTCAgtatctttttgtgtgtgtgtgtgtgtcagccgAGTACCAGCCAAACCCTTCACTAAGTAAGCAGAAGTATGGGACAGACATGgatctttttttcagttcagcTGATTGAAATGTGTTGTGAACTCATgtcaaaaatgcacaattaatcATATTGCCATCTAACTTCCATACCCTTTACTCCGTGTACGGTAAAGTGAGCTCTTACTACTTAAGTGATAATTATGACTAAAAATGACCTCTTATACGAATAACTGGACAACTGAACAAATGTTATGACTTTGAAAGCATTCCTTTTAAGTTCAAGTGACTGTAGGTACACTGTAGGTACACTCTTCCCTTTTCGTCCTTATACATACATGTCATAATGATATGCATGATGTCACAGCCGTAAGCTGCAATACGAACCTCTGAGAtctcaaagtgtgtgtgtgagtggataCACTGGGAGAGACCGATGGGAGACAGATGTGCCTACGCTCTTACAGTTAGGACCTGCTGTTGGAGATTTAGCCGAAGTAGCCTTTCATTATCCCAGCTTTTTCTCGCTTCATAATAGCTGAAGAGAATCGCTTTTCGTGGCACTTACGTTACCAAACCTGCTCGGAGTAGCACACAAGCACTGTAGCTGTGATCATACACACCACTTCATCCTGATCGTTCATCTTTTTGGTACAAACGACATATTGAATGGAGTCTTTAGctgtgttaatttatttttatattaaccaCTACATACGATTTGGGATTGTAACCACagaaggtttatttattttaaaatagactaTGTATTTTTACTTGCTTTGTTTTAGCTGACATAAAAACCTCATAATtctgatacttttttttttcatctctacAAAATGGTGTTCTAATTTTTTCCACTAGCATCTTTGGTGGAACTTAATGCTCAGACTCTTAGGGGGTGAATAGAAATATGAAGAATAACTTGCTATTTTCCAAACTGTGAATATCTTTGCATTTCTAAAAGAGACCATATATCTTTGAGCACCTGCattgagagaaagagatagaaaCGGGCTTTCAAGCATTATCATTCATGTgtcaatttctctttttttgataATAAGCTTGCCAGATAAATCTTAAGGTATAGATTTGTACTGAAATTGTCAGTATTTTCTTAGTACTACATGATGTAAATTTGTTTCACATAATGAAACTTTTAAAAGGATAAATACTATATTAAGACATAGATGCACATGTATTATAGTCGAATCTTGGATGAAATAAACTAATATGTAGAAAATGA

Function

GO:

id name namespace
GO:0016324 apical plasma membrane cellular_component

KEGG:

id description
K06093 PARD6; partitioning defective protein 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247856.1 lncRNA downstream 113478 11376177 ~ 11376688 (-) True LOC122328925
TU232181 lncRNA downstream 136338 11353159 ~ 11353828 (-) True G156785
TU232149 lncRNA downstream 245346 11242600 ~ 11244820 (-) True G156762
TU232146 lncRNA downstream 327147 11162664 ~ 11163019 (-) True G156759
TU232102 lncRNA downstream 414205 11071410 ~ 11075961 (-) False G156726
TU232213 lncRNA upstream 32338 11539623 ~ 11540045 (-) True G156812
TU232436 lncRNA upstream 255155 11762440 ~ 11763023 (-) True G156962
TU232440 lncRNA upstream 256424 11763709 ~ 11850582 (-) False atp2b3b
TU232453 lncRNA upstream 274282 11781567 ~ 11782366 (-) True G156971
TU232457 lncRNA upstream 286318 11793603 ~ 11851710 (-) True G156972
XM_043224666.1 mRNA downstream 1736 11466356 ~ 11488430 (-) True arfgef2
XM_043224668.1 mRNA downstream 25256 11448182 ~ 11464910 (-) False bcl2l1
XM_043224667.1 mRNA downstream 25275 11446999 ~ 11464891 (-) True bcl2l1
XM_043225217.1 mRNA downstream 61419 11411884 ~ 11428747 (-) False wu:fa11c10
XM_043224591.1 mRNA upstream 8852 11516137 ~ 11517702 (-) True LOC122328724
XM_043224596.1 mRNA upstream 22752 11530037 ~ 11531810 (-) True oard1
XM_043224594.1 mRNA upstream 22752 11530037 ~ 11531797 (-) False oard1
XM_043224593.1 mRNA upstream 25356 11532641 ~ 11536011 (-) True guca1b
XM_043225461.1 mRNA upstream 37245 11544530 ~ 11630976 (-) False LOC122329255
TU232124 other downstream 384943 11100744 ~ 11105223 (-) True G156746
TU231697 other downstream 812117 10675684 ~ 10678049 (-) False LOC122328798
TU231532 other downstream 1122797 10365543 ~ 10367369 (-) False LOC122328779
TU231517 other downstream 1250893 10237096 ~ 10239273 (-) False ankrd52a
TU231501 other downstream 1258247 10230546 ~ 10231919 (-) False ankrd52a
unassigned_transcript_2621 other upstream 10725 11518010 ~ 11518081 (-) True trnah-gug_32
TU232410 other upstream 234115 11741400 ~ 11746620 (-) False LOC122328546
TU232414 other upstream 234115 11741400 ~ 11746620 (-) True LOC122328546
XR_006247903.1 other upstream 235385 11742670 ~ 11742803 (-) True LOC122329333
TU232418 other upstream 236834 11744119 ~ 11746620 (-) False LOC122328546

Expression Profile