RNA id: XM_043225021.1


Basic Information

Item Value
RNA id XM_043225021.1
length 3867
RNA type mRNA
GC content 0.43
exon number 13
gene id mlh3
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 14044783 ~ 14050528 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AATTCACGGTGTTGTTAGTAGAAAGTGGGTTGTACACTTAACAGAAACAATAGTTTTACAGCTTAACTGAATCACCGAATGAAATGTCACTCAAACGTTATTTATATCAGGTTACAGAAGCGTCCTATTACAGTGAGCGGTAACGGAAACCGTTAATTTAAATGGACTGAAATGCATCTTAACGACAGTAACAACTAGTAAACGTACCGGTGCTGTTACATAGCAACAGTTTTAGCTGACAGAAAGCTGTGTTTTTTAGGTTCAGACACAAATTCAAACTCACCAGCCACCAAAGAGAATGATCAAGAGTTTGCCCAAAGATGTTCAAGCACAACTGCGCTCTGGTGTTGCTATTTTCTCATTGCAGCAATGTGTGGAGGAGCTCATATTGAACAGCATTGATGCTGGAGCAACATGTGTGGCTGTCAAAATAGACATAGACGCCTGCAAGCTTCAGGTGATCGACAATGGCGCGGGAATGTGCCAGGAAGACATGGAAAGAGTGGGTCTGCGATACAACACAAGCAAATGCGGCTCGCTGGAGGATCTGGAAAATCTCCGCTTTTATGGGTTCAGAGGGGAAGCGATTTCCAGTATAGTGTCTCTTGCAGAAATGGTCGaaatatcatctaggactaagCTGTCGGTGAAAACGtacattaaaacttttaacGAAACAAATGCACTGGATGTTGCTGAAGCTCAAACCGTTCGTCCCTCCGCAGGGACAACTGTATCTGTCCACAATCTTTTCCACAACATGCCAGTTCGGAGAAAGAGAATGGATGCTGTTTTAGAAACCGAACGCATCCGTCAGAGAGTGGAGGCCATATCTCTGATGCACCCTTCTGtgtcatttacagtgaaaaaagaaaactcgGCCCACATGATGGTGCAGCTCTCTAAAACAAGCAGTACTTATTACAGGTTTGTGCAGATTCATGGCTTGAGTCGAGCTCAAAAACTCGGGGAGGTCAGTTACATCCATGAGCAGTTCGAAATGACCGGTCACATCGGCCGTGAGGGTCACTACAATAACAGCTTGCAGTTCCTGTTTGTAAATGGGAGGCTTCTTTTGAAGACGCGCATTCATAAAACACTCAGCTGCCTTTTGAAGAGAGTAAGCAGTGCTGCCAGACAAAACAACAGCCCGACTGCATATCCGTTGATATCGAGCCCCAAACAAAAGGGAGGATGCGATGTCCATGGCGTCTATGTTTTGAATATCAAATGCCATTACTCAGAGTATGACATATGCCTTGAACCAGCCAAGTCTTTGATAGAGTTCAAAGACTGGGATAATGTGTTCATCTGCATCGAAGAAGGTGTCAAAACATTCCTTACTAAAGAAAACCTGATGACAGAGTTTTCCATGAATGTAAGCGACGGCCCATCAAGTAGTCCAGTGGGGAATGCAAAGACTCCCGTGGCAGTAAAAATCCTCAGCGCTGAGGAAAAATGCGAAGAGCGTGATGCAATGTCTGAGAAGAAGAATGATGCAAGTACTGTGGACCTCTCTGAAGGTGTTCAAATGTCGGAGAAGGTGTCAACAAACACTAAAACCTTCTCCAGTGAAGAATCAGAGGCAGAAAAAGTGCTTCAGGCTGATTTGTCTTTGCGGACCACGTTTGCAGATGCTTCAGAAATGAATAACAATTGCAAAGAAGATGGAAGTGCAGTTTGCCCAATTATAAGCGATTATAAAAATTTGCCAGATAACAATGTGACGGGAAGCAAATACCAAAAGATTTCCATTATAGATGGAAAAGAGGCCGAAGACAGTTTGAAAAAATTCTgtttgacaaataaaatgtctCCAAAAAAGAGGAAGTTGTCATTAAATGGCGCTGTAGAAGACAAACATGGTTTTTATGGGACCAACTCAAAGACTTCCAGAGCTGCTCCATGTCGTAAATTAGCTCTGTCGTTTGAAACGGGATCTCTTGACAAGTTCAAAAGGTTGTTTGGGAAGGGCACTGAGAAAAAACAACCAAGTacgaaaaaaacaaaccttttaaatCTAATGCCTTCGCGGAAATCCAATGACAGCTTTGTAGGAACTTCTTGGTGTTCAGAGGATTTAGACAAGCCCTTATTGAGGAACATACCAGGTGCTCATTCTCCATATACTTCCGAATGTTCTGCTGAATCTTCATCATGGAGCAAGGCAGAAAAACTGTCATTGGCTGCCAAATGTTCcaatttaaaacaagacaaaaagctATTCAGCGAGGTCAGCAAAGATACAGACTTTCTTTCTATGGAAAACTCATCTTTCCCAGTCGTGCAGGACTCCCACTTTCAAGAAGAGTTCTGTGAATTAGAAAAAAGCCTTTTAGAAGATGTTTTATTTGGATCTACCGGAACTGTTGATTCAGTTGTCCGTGAAACTCCAAACTTCTCTATAAATGAGCAGGACACATCAATATCGGACACTTCCGTTGTTTTAGAAGTCTCACACCCTGGCAACAAGAATGTGACTTCCTTTGTAGGAAGTGTGAACTGTGTTGATGAAGCCAGCGTAACCTCTCAGCATGATCCTCAGTGCGGCGACACAGGAAATGAAGGTCAGGCTACAAACGAATGTGTTGAAACAATCCCAGTGTCCAGCAGCTGGCTGGCTCATTATGACAGTTGTTTAGGAAAGCTGGTTTACATCAACCAAGTTACAGGGCTGAGCAAATACAGCTCTCCTCTTGTGGAGGAGACTCAAGTGCCATGCACCACAGATGTCACTAACATGGCAGTCAGTGTTATTTCAAGAGCAGGATTTGAGTACAGGTGTTATCCATTTCACACAGACATTGTACTTCCCTTTCTGCCCAAGCCCAGAGCAGAAAGAGTCCTTAACTCAGGGATAGACAGCAGAGAGGTTGCTCAAGGTCCCGATTCACTATCGACTTTATTCTCAGAATGGAATAACCCAGTGTTCATACGGCCTCCAGAGGTTGCTGTGGATGTAACCAGCGGTCAAGCTGAGGGTCTTGCTGTAAAAATCCACAATATTCTTTACCCCTACCGGTTTACCAAGAACATGATCCACACAATGAGAGTCATCAATCAAGTGGACAAGAAGTTCCTTGCTTGTTTGATAAACACAACAGAGCAGGAAGCCCATGAAAGCAGTACAAATGAAGGAAATCTTCTAGTGTTGGTTGATCAACATGCCGCCCATGAAAGAGTTCGACTGGAGGGGTTAGTAACAGACTCCTATGAGGATGACCCAGACACACCTGGAAAAAAGAGGCTGTGTTCCTCAAGTGTAACCCCATCCTTAGAGATTAATGTAACTGAGGAGGAATTGAGACTTCTGAGGTCTTGTCAGGCCTTCCTGAGGGGTCTTGCTTTAGATGTAAGGTTCCCAAAGAGTGAGTCACTGAGTGTGTTTTTGGAGAGGCTTCCCACATGTTTCATAGAGAAAGAAAGCACAGAGCTCCGCCGTGGAAGACGGTCCATAATTAAAACCATTGCAGAGGAATATCTGCGAGAACACATTGAGcttttccactcaactGGAAGAGCGAGGGGAACGCTGCCACTGACAGTTCATAATGTGCTCGCCTCACAAGCTTGTCATGGAGCAATTAAGTTCAATCATATTTTGAGTAAAGAGGAGTGCTGTAGTCTGGTGAGCTCGCTCTCCTCTTGTCAGCTTCCCTTCCAGTGTGCTCACGGAAGACCTTCAATCGTACCTTTGGCTGATCTTTACCACCTGAAAGAGCCAGAGGATCTTCCCAAACCAAATCTGAGGAAATTAAGGAGAATGTACAAATCATGGCTGCTCTACGGAAAAGATAAATCTgttgcacaaaacaaaacatgaatttACAAACACTTTAcgttttgtattaaattatttaattaaag

Function

GO:

id name namespace
GO:0006298 mismatch repair biological_process
GO:0030983 mismatched DNA binding molecular_function
GO:0005524 ATP binding molecular_function

KEGG:

id description
K08739 MLH3; DNA mismatch repair protein MLH3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233198 lncRNA upstream 4584 13981975 ~ 14040199 (+) True G157481
TU233195 lncRNA upstream 89237 13955112 ~ 13955546 (+) True G157479
TU233192 lncRNA upstream 91311 13944085 ~ 13953472 (+) True G157476
TU233190 lncRNA upstream 100864 13943589 ~ 13943919 (+) True G157475
TU233189 lncRNA upstream 102351 13942021 ~ 13942432 (+) True G157474
TU233221 lncRNA downstream 35066 14085594 ~ 14086952 (+) False G157496
TU233222 lncRNA downstream 35066 14085594 ~ 14087258 (+) True G157496
TU233216 lncRNA downstream 37053 14087581 ~ 14088519 (+) True G157494
TU233215 lncRNA downstream 37424 14087952 ~ 14088519 (+) False G157494
TU233223 lncRNA downstream 43550 14094078 ~ 14094458 (+) False c1qtnf12
XM_043224174.1 mRNA upstream 31904 14008220 ~ 14012879 (+) True szrd1
XM_043225565.1 mRNA upstream 133033 13905088 ~ 13911750 (+) True clcnk
XM_043223991.1 mRNA upstream 213338 13824959 ~ 13831445 (+) False LOC122328345
XM_043223990.1 mRNA upstream 213338 13824967 ~ 13831445 (+) True LOC122328345
XM_043223987.1 mRNA upstream 220246 13814222 ~ 13824537 (+) True ttll10
XM_043225025.1 mRNA downstream 163 14050691 ~ 14056567 (+) True kansl2
XM_043224783.1 mRNA downstream 7442 14057970 ~ 14085170 (+) False nckap5l
XM_043224787.1 mRNA downstream 7442 14057970 ~ 14085170 (+) False nckap5l
XM_043224786.1 mRNA downstream 7442 14057970 ~ 14085170 (+) False nckap5l
XM_043224785.1 mRNA downstream 18905 14069433 ~ 14085170 (+) True nckap5l
unassigned_transcript_2622 other upstream 2526247 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 2528912 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2619 other upstream 2530937 11513773 ~ 11513846 (+) True trnan-guu_36
unassigned_transcript_2618 other upstream 2532085 11512625 ~ 11512698 (+) True trnan-guu_35
TU231904 other upstream 2867750 11174421 ~ 11177033 (+) True G156586
XR_006247901.1 other downstream 3836 14054364 ~ 14054500 (+) True LOC122329331
XR_006247900.1 other downstream 6157 14056685 ~ 14056821 (+) True LOC122329330
XR_006247782.1 other downstream 249173 14299701 ~ 14343274 (+) False si:dkey-151g10.3
TU233368 other downstream 633462 14683990 ~ 14685316 (+) False LOC122328906
TU233419 other downstream 661619 14712147 ~ 14714533 (+) True LOC122328914

Expression Profile