RNA id: XM_043225042.1


Basic Information

Item Value
RNA id XM_043225042.1
length 3400
RNA type mRNA
GC content 0.48
exon number 26
gene id rap1gapa
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 12962295 ~ 13037553 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTCAGGGCTGTCATGTGTAGATGTCTCAGACTCCTCGGCGTCGATCTGAGGAGGAGTACACTTGTATGAGAGGAAAAGGAGAGCTCTGTATTATTCAGTGCATCGCTGTGTGGCATAGCATGGAGCTTTCCGTAGCTTGTGTTCTTACGCCAGTTTAAGCGCTGAGTGTAGTTTACTAAGTGCGTCCACATCGCCGTACTTCATACTGGTGACAACGAGAGAAGTAAACCAAAGAAAACAGAACCAGagTTGACAAGACATTTTCCAGAGCCAGGAGTTTGTGGAAACAGGATGGAGGAGAGCCCTGTATCTCTAACACACTAGATCCTTCACTGTTCCAGCCATCACTGCCTCACACCGGCCCTGCGTTCCTCAAGACTactgatttatttgaaatgattgaGAAAATGCAGAGCAACAGAATGGACGAGCAACGATGcactcttcctcctcctctcaaAACCGAGGAAGACTACATCCCTTACCCCAGCGTCCATGAGGTTCTCGGCAGAAGGAGTCCATTTCCCTTGATTCTGCTGCCCCAGTTCGGGGGTTATTGGATTGAAGGGACCAATCACGAGCTGAGCAATGGGATTGACCTGGACCAGCTCCTGTCTCCCAACTCACGCTTCAAACTGGAGTGCAACACCACTGCTAAGATCTACAGGAAGCATTTTCTGGGCAAAGAACACTTTAATTACTATACAGTGGACAGTGCCCTGGGCCACCTGGTGTTCTCCATGAAATATGATGTTATCGGGGACCAAGAGCATCTCCGTCTCATGCTCAGaacaaaaatgaaaacatatcaCGACGTGATTCCAATATCTTGTCTGACCGAATTCCCTAACATTGTCCAGATGGCCAAGCTCGTCTGTGAAGAGGTGAACGTGGACCGATTTTTCCCGGTGCTTTACCCAAAGGCCTCCAGGCTCATCGTCACTTTCGACGAACACGTCATAAGCAACAACTTCAAGTTTGGAGTCATTTATCAGAGGTTTGGACAGACCTCAGAGGAGGAGTTGTTTGGGAATAACGAGGAGAGTCCTGCTTTTATGGAGTTTTTAGAGTTTCTGGGACAGAAAATCGAGCTCCATGACTTCAAAGGGTTCCGTGGAGGACTGGACGTGACACACGGACAGACAGGCTCTGAATCTGTGTACCACAATTTCCACAACAAGGAGATCATGTTCCACGTGTCAACTAAGCTGCCTTACACAGAGGGCGATACACAGCAGCTTCAAAGGAAGAGGCATATAGGAAATGACATTGTGGCCATCGTGTTTCAAGACGAGAACACTCCGTTTGTGCCAGATATGATTGCCTCCAACTTCCTACATGCCTATGTAGTGGTGCAAGTTGAAAATGCCTGTTCTGACAACGTCCTGTACAAGGTGTCAGTAACAGCGAGAGATGACGTCCCCTTCTTTGGACCACCCCTACCCAACCCAGCTGTTTTTAAGAAAGGCCCAGAGTTTCGTGAATTCTTGCTTACCAAGCTAATCAATGCTGAATACGCCTGTTACAAAGCTGAAAAATTTGCCAAATTAGAGGAGCGTACCCGGTCTGCTCTGCTGGAGACGCTGTATGAGGAGCTGCACATCAACAGTCAGGCTATGATGGGGCTGGGAGGAGAGGAAGACAAACTGGAGAatggaggaggagggggagggGGCTTCTTTGAGTCTTTCAAGCGGGTGATCCGCAGCAGGAGCCAGTCTCTGGACACCATGGGCCTCAATATCAGGAAGTACACAGTCTCCAATAGTCACAGCGGCAGTTTcacccaaaacaacaacaaccaccaCTCACCAGAGACCCCCAAACCCCCTGGGATATCATTGCTTGTCCCAGGCAAAAGTCCCAGTAAATATGGACGGCGTGGCAGTGCCATAGGAATAGGAACCATAGAAGAGTCTTTGATCATTCCTGGAAAAAGCCCAACTAGGAAAAAGTCAGGACCTTTCAGCTCTCGACGTAGCAGTGCAATCGGTATCGAGAACATTCAGGAGGTCCAGGAGAAGAGcagTAGAGAGTGCTCTCCCAGCACACAGAAGACACCTGACAGTGGCCACGCCTCCCAGGATCCCAAGTCTGAAAACTCCTCCAATCAGAGCTCTCCTGAGGTCCTCATCACCAAGAACAActcaaGTATCTACTGCCGGGCTCCGTCCATTCCCGAGGCTCATGACCTGTCCCGCTCCTCCTCTAACGCCAGCAGCTTTGCCAGTGTGGTAGAGGAGAATGAAACAGAGGCCACAGAGGACTATGACACTGGCATGGAGAGTCTGTCATCAGCAGATACTCCTCATAAACGAGATTCGTTCACGTACAGCACATGGCTGGAGGACAGCATGAGCGCTGCCAGTACAACCAGCAGGGGGAGCTCTCCCGCCGGGAAAACAGATGGTGGAAAGAACCAGGAGCAGAACCGTACAGACATCCGCATCAAACTTGAGCGACCGCATGACCACAAGTCTGCATCTAATTGCTAGCCTTTCCTGGTTGCCTGCCTGGACATCCATCAACAGCATTTCCATTAGAAACACCtaagagagaaaaggagaacTGGAGTTCATGCCGTTACTTGAtgaagaagaggatgaagaCCACAGCTGGCTGCAGAAGTGACCACATGTACATGCCCCAGAACCACAGTCATGTGACCATACCTCCATCAGGACACTCACTTCCCTCGCAGACTTGACCAGAAAGAGGAAGGAGTTACTTACAGGTAGCCAGAGACCGTGCATTGGCCCTCCTCCAGGCTTGTCCTCCTTCTTGTGAGTACATCAGTAAATGAGTGAGAACCTCCTCTGTAGCAGCATCTACTGACATGCCACTGTGCTAGTGAGTGGCTAGACTAGCAGGTTATTTGAGGTCCTAACACTGTGCTGAAATTCAATTTTGTGAAGTTTGTCTCCTGAAGAACATTTCATCTGCTTGCATGATGAAAGCTTTTGAGCCCTGTCCCAAATGGTGGACTCTGCAACAGGCATAGAACATCCTTCTGAAACCTAAAATGACAAATGGGAGGCGCTATGGACTTTGCTGCAAGTACAGTACACATCAAATGTGCTATTTAGGACAGGGCCATAGAGACCAAACCATTTCTCATGTTCTGATATTGATGTTCTGTATGTTCAGATTTCAGGTGTGAAAACCCTTCGTCTGATGTTCATTGCAGCTGTGCAATACATTATTTAAGAGTAACATCAATCCAAaagttcaaagaaaaataaatcttgtgTAGCATTACAGATAACCGCTGCTAATTCCATGTTATGGCCAATATTCAAATTCTGTACTAttttatgaagaaataaacacaaatgaacTTTAAACGCCAAGTGAATTAAGGTGTCACAGCATTGCAATATGCAGAGTTAAAATAGTGTG

Function

GO:

id name namespace
GO:0051056 regulation of small GTPase mediated signal transduction biological_process
GO:0005096 GTPase activator activity molecular_function

KEGG:

id description
K17700 RAP1GAP, RAPGAP; RAP1 GTPase activating protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232925 lncRNA upstream 108463 12853241 ~ 12853832 (+) True G157294
TU232866 lncRNA upstream 174580 12729044 ~ 12787715 (+) True G157265
TU232617 lncRNA upstream 575914 12353090 ~ 12386381 (+) False G157084
TU232968 lncRNA downstream 68907 13106460 ~ 13106957 (+) True G157326
TU232971 lncRNA downstream 77405 13114958 ~ 13115174 (+) True G157329
TU233085 lncRNA downstream 374117 13411670 ~ 13494477 (+) False G157408
TU233091 lncRNA downstream 400722 13438275 ~ 13441951 (+) True G157410
TU233089 lncRNA downstream 456033 13493586 ~ 13495376 (+) True G157408
XM_043225480.1 mRNA upstream 9280 12944258 ~ 12953015 (+) True LOC122329270
XM_043224600.1 mRNA upstream 192365 12734989 ~ 12769930 (+) False eif4g3b
XM_043224011.1 mRNA downstream 71501 13109054 ~ 13113029 (+) True gpr157
XM_043225301.1 mRNA downstream 79440 13116993 ~ 13123560 (+) True LOC122329098
XM_043225051.1 mRNA downstream 94464 13132017 ~ 13141968 (+) True eno1a
XM_043225050.1 mRNA downstream 94464 13132017 ~ 13141968 (+) False eno1a
XM_043224413.1 mRNA downstream 110152 13147705 ~ 13284874 (+) False rerea
unassigned_transcript_2622 other upstream 1443759 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 1446424 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2619 other upstream 1448449 11513773 ~ 11513846 (+) True trnan-guu_36
unassigned_transcript_2618 other upstream 1449597 11512625 ~ 11512698 (+) True trnan-guu_35
TU231904 other upstream 1785262 11174421 ~ 11177033 (+) True G156586
XR_006247901.1 other downstream 1016811 14054364 ~ 14054500 (+) True LOC122329331
XR_006247900.1 other downstream 1019132 14056685 ~ 14056821 (+) True LOC122329330
XR_006247782.1 other downstream 1262148 14299701 ~ 14343274 (+) False si:dkey-151g10.3
TU233368 other downstream 1646437 14683990 ~ 14685316 (+) False LOC122328906
TU233419 other downstream 1674594 14712147 ~ 14714533 (+) True LOC122328914

Expression Profile