RNA id: XM_043225048.1


Basic Information

Item Value
RNA id XM_043225048.1
length 2474
RNA type mRNA
GC content 0.48
exon number 21
gene id rap1gapa
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 12962295 ~ 13037553 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaaacacacacattcacacacacacatacccagtCAGTCCAGGGAGACAGAGGCAGTGCTGGTGTCTCTGTAGagttctgtctctctgtttttcaCTCAGATGTATCCATTAGCCAAGATGCCGCAGAGAAAGAGGAGTTTCACTTTTGGAGCGTACGGCGGagTTGACAAGACATTTTCCAGAGCCAGGAGTTTGTGGAAACAGGATGGAGGAGAGCCCTGTATCTCTAACACACTAGATCCTTCACTGTTCCAGCCATCACTGCCTCACACCGGCCCTGCGTTCCTCAAGACTactgatttatttgaaatgattgaGAAAATGCAGAGCAACAGAATGGACGAGCAACGATGcactcttcctcctcctctcaaAACCGAGGAAGACTACATCCCTTACCCCAGCGTCCATGAGGTTCTCGGCAGAAGGAGTCCATTTCCCTTGATTCTGCTGCCCCAGTTCGGGGGTTATTGGATTGAAGGGACCAATCACGAGCTGAGCAATGGGATTGACCTGGACCAGCTCCTGTCTCCCAACTCACGCTTCAAACTGGAGTGCAACACCACTGCTAAGATCTACAGGAAGCATTTTCTGGGCAAAGAACACTTTAATTACTATACAGTGGACAGTGCCCTGGGCCACCTGGTGTTCTCCATGAAATATGATGTTATCGGGGACCAAGAGCATCTCCGTCTCATGCTCAGaacaaaaatgaaaacatatcaCGACGTGATTCCAATATCTTGTCTGACCGAATTCCCTAACATTGTCCAGATGGCCAAGCTCGTCTGTGAAGAGGTGAACGTGGACCGATTTTTCCCGGTGCTTTACCCAAAGGCCTCCAGGCTCATCGTCACTTTCGACGAACACGTCATAAGCAACAACTTCAAGTTTGGAGTCATTTATCAGAGGTTTGGACAGACCTCAGAGGAGGAGTTGTTTGGGAATAACGAGGAGAGTCCTGCTTTTATGGAGTTTTTAGAGTTTCTGGGACAGAAAATCGAGCTCCATGACTTCAAAGGGTTCCGTGGAGGACTGGACGTGACACACGGACAGACAGGCTCTGAATCTGTGTACCACAATTTCCACAACAAGGAGATCATGTTCCACGTGTCAACTAAGCTGCCTTACACAGAGGGCGATACACAGCAGCTTCAAAGGAAGAGGCATATAGGAAATGACATTGTGGCCATCGTGTTTCAAGACGAGAACACTCCGTTTGTGCCAGATATGATTGCCTCCAACTTCCTACATGCCTATGTAGTGGTGCAAGTTGAAAATGCCTGTTCTGACAACGTCCTGTACAAGGTGTCAGTAACAGCGAGAGATGACGTCCCCTTCTTTGGACCACCCCTACCCAACCCAGCTGTTTTTAAGAAAGGCCCAGAGTTTCGTGAATTCTTGCTTACCAAGCTAATCAATGCTGAATACGCCTGTTACAAAGCTGAAAAATTTGCCAAATTAGAGGAGCGTACCCGGTCTGCTCTGCTGGAGACGCTGTATGAGGAGCTGCACATCAACAGTCAGGCTATGATGGGGCTGGGAGGAGAGGAAGACAAACTGGAGAatggaggaggagggggagggGGCTTCTTTGAGTCTTTCAAGCGGGTGATCCGCAGCAGGAGCCAGTCTCTGGACACCATGGGCCTCAATATCAGGAAGTACACAGTCTCCAATAGTCACAGCGGCAGTTTcacccaaaacaacaacaaccaccaCTCACCAGAGACCCCCAAACCCCCTGGGATATCATTGCTTGTCCCAGGCAAAAGTCCCAGTAAATATGGACGGCGTGGCAGTGCCATAGGAATAGGAACCATAGAAGAGTCTTTGATCATTCCTGGAAAAAGCCCAACTAGGAAAAAGTCAGGACCTTTCAGCTCTCGACGTAGCAGTGCAATCGGTATCGAGAACATTCAGGAGGTCCAGGAGAAGAGAATTGCCGCTCTGTTGTCAGAGGACAGGACagtgctctgtctctctctaccCAGCGTCACTCTCAAGAATGGGAGGCTCGTCGTGGATCCCTCCAAGTATAAATGCCTCCATAGAATGACACCTCTATAACCATAGAGTAGCTGCTTTCCTTACCTGGCCATAGCAATGCATCTGAAATGCTATGAATTATGGCCTTTGGCACTATATTAAACTGGTCACACATGCAAAATCAACACGATAACTGATTGGTGGTCTGCTCATTTTTCAGCCAATCAATGTCTGTTTCACTGATTTTGCATGAGCTGGCCATTGCCATATGTGCTATAGTACTTACAGGCCCTTTGAATGATGTTGCTTCAAAATTCATGTGTTTCAGTATAGTGATGTGAATCAGCATGCACTGTCgtatctaacctaacctaactgtGAGTAGGCTGCAGTTGAGCTTGGACTCTGTCACCTCACCTTTGACATGTAGAGTTTCAAACACATGGCTTATGCTGCCCTCTGAtggtgaaagtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232925 lncRNA upstream 126518 12853241 ~ 12853832 (+) True G157294
TU232866 lncRNA upstream 192635 12729044 ~ 12787715 (+) True G157265
TU232617 lncRNA upstream 593969 12353090 ~ 12386381 (+) False G157084
TU232968 lncRNA downstream 71683 13106460 ~ 13106957 (+) True G157326
TU232971 lncRNA downstream 80181 13114958 ~ 13115174 (+) True G157329
TU233085 lncRNA downstream 376893 13411670 ~ 13494477 (+) False G157408
TU233091 lncRNA downstream 403498 13438275 ~ 13441951 (+) True G157410
TU233089 lncRNA downstream 458809 13493586 ~ 13495376 (+) True G157408
XM_043225480.1 mRNA upstream 27335 12944258 ~ 12953015 (+) True LOC122329270
XM_043224603.1 mRNA upstream 210420 12734990 ~ 12769930 (+) False eif4g3b
XM_043224011.1 mRNA downstream 74277 13109054 ~ 13113029 (+) True gpr157
XM_043225301.1 mRNA downstream 82216 13116993 ~ 13123560 (+) True LOC122329098
XM_043225051.1 mRNA downstream 97240 13132017 ~ 13141968 (+) True eno1a
XM_043225050.1 mRNA downstream 97240 13132017 ~ 13141968 (+) False eno1a
XM_043224413.1 mRNA downstream 112928 13147705 ~ 13284874 (+) False rerea
unassigned_transcript_2622 other upstream 1461814 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 1464479 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2619 other upstream 1466504 11513773 ~ 11513846 (+) True trnan-guu_36
unassigned_transcript_2618 other upstream 1467652 11512625 ~ 11512698 (+) True trnan-guu_35
TU231904 other upstream 1803317 11174421 ~ 11177033 (+) True G156586
XR_006247901.1 other downstream 1019587 14054364 ~ 14054500 (+) True LOC122329331
XR_006247900.1 other downstream 1021908 14056685 ~ 14056821 (+) True LOC122329330
XR_006247782.1 other downstream 1264924 14299701 ~ 14343274 (+) False si:dkey-151g10.3
TU233368 other downstream 1649213 14683990 ~ 14685316 (+) False LOC122328906
TU233419 other downstream 1677370 14712147 ~ 14714533 (+) True LOC122328914

Expression Profile