RNA id: XM_043225052.1


Basic Information

Item Value
RNA id XM_043225052.1
length 1828
RNA type mRNA
GC content 0.49
exon number 7
gene id LOC122328942
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 7862203 ~ 7866387 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgcattgtgggatagcGAATGATCAGCGATGGCGGCCAGACTAAAGCGTCTGAAACTTTTCGTGGTAACTTATTTGCATGTAACGTTCCTGTCTTTGCACGCGTTTACCGACGCGGCGGACGTGGCGTGGGATGAAAACGGATACATCCTGTACTGTCCGTGCATGGGTCGGTTCGGAAACCAAGTGGATCATTTCCTCGGATCGCTGGCTTTTGCTAAAATGCTGAACCGAACGCTCGCGGTTCCGCCGTGGATTGTTTACCGGCATCATTCCCCgccttttcaaaatGTGCATGTTCCCTACAGTGAGTATTTCCAATTGGAGCCAGTGAAGCAGTACCACCGTGTGGTGAGTCTGGAGGACTTCATGGAGCACTTGGCTCCTAAGCACTGGCCCCCGGGTCAGAGAGTGGCCTACTGCTTCGAATCTGCAGCTCAGAGGAGCGTAGACAAAAAGAGCTGTCCCATGAAGGACGGAAATCCTTTCGGCCCCTTTTGGGACCATATCGGAGTCGACTTTGATGGCTCCGTTCTCTTCGGAGGACTGTCGTTCAGCTCGTACTATCAGCCTCACTGGATAAAAAGGTTTCCTCCGAAAGAGCATCCAGTTCTCGCTCTTCCAGGAGCCCCCGCGCAGTTCCCCATTCTAGAGGAGCACATCGGACTGCAGGAGTATGTGGTGTGGTCTGAAAAAATGGTACAGGAAGGAGAAGACCACATCAGAAGCCTGCTAAACAGACCCTACGTGGGAATTCATCTGAGAATCGGCTCGGACTGGCAAAATGCCTGCAAGCTTCTGAAGTCGGGTGAAACCGGTCCTCACTTCATGGCATCTCCGCAGTGTGTGGGATACGAGCGCCAGACCGCCCTGCCGCTGACCATGGACATGTGTTTACCAGACCTGCCTGAGATCCGCCGCGCCGTCAAGCTCTGGGTGAAGATCACCAACGCTCAGTCCGTTTACATCGCCACCGACTCCGAATCACACGCCGCAGAGATTCAGAGACTCTTCAGGGGCAAGGTGAAGGTGGTGAGCTTGCAGCCGGACACCGCTCAGATCGACCTGTATGTCCTCGGTCAGGCCGATCACTTCATCGGCAACTGCGTTTCGTCTTTCTCGGCCTTCGTTAAAAGGGAGAGAGACGTTCGCGGGAGACCCTCGTCGTTCTTTGGGATGGACTACCTgggaaaaggaaaggaaaggaggAGCTCTGATAAAAATGAAGATGTTACGTTTTTTGTAACTGAAGGGTGGTTGAGGTTTTGCATGTTTCAGGTGTCTGGGCAGATTTTGGACAAGAACGTTTGGATAGGGTTCACGTAATCAAATGAAGGGAGAGCAAGATTTAGTACCTTGATAGTTTCTCTGGATGCTGCATTTCTCCCACGATGCACTACTACATTTACTGTGAGCAACCGTGATATCATTGGTATTTTTGTACTGGAACGTTTGCATTATTTGAGGATGTAAAAACCGCCCCCTGTGAGGGCAGAGTTATTATACTGGAGACGGGTCGAGCGTTAATggttggaaatgtttttttccgcTCTTTATAACTGCAGGCCATTTAAGACCTCCAGAGGCATCCAGATGTGCAGTGCTCTAATGAATGCTGAAAATGAACATGTGTGTCACTATTTAAAGAATGTGTGTCACAGGCTTTCTAATGTCTTAGTAATGCATGGTGacattgtttttgaaagtcagTGCGAAACCAAACTGCAGAAacgttttataaatgttttaagatgtacttattattaattttgtacaACTTTAAATGACATTCCTCAAGttagtttacaaataaaaatataacaagcagta

Function

GO:

id name namespace
GO:0046922 peptide-O-fucosyltransferase activity molecular_function

KEGG:

id description
K03691 POFUT; peptide-O-fucosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230540 lncRNA downstream 9952 7819746 ~ 7852251 (-) True G155669
TU230569 lncRNA downstream 25665 7834562 ~ 7836538 (-) True G155684
TU230570 lncRNA downstream 25665 7834562 ~ 7836538 (-) False G155684
TU230571 lncRNA downstream 25665 7834562 ~ 7836538 (-) False G155684
TU230545 lncRNA downstream 44832 7766248 ~ 7817371 (-) True G155670
TU230585 lncRNA upstream 106716 7973103 ~ 7973325 (-) True G155698
TU230649 lncRNA upstream 310312 8176699 ~ 8177518 (-) True G155737
TU230697 lncRNA upstream 440892 8307279 ~ 8382607 (-) True G155759
TU230759 lncRNA upstream 660015 8526402 ~ 8532927 (-) True G155803
TU230786 lncRNA upstream 758539 8624926 ~ 8625642 (-) True G155825
XM_043225053.1 mRNA downstream 849 7854304 ~ 7861354 (-) True LOC122328943
XM_043224571.1 mRNA downstream 29619 7822122 ~ 7832584 (-) True LOC122328712
XM_043224007.1 mRNA downstream 73916 7784305 ~ 7788287 (-) True LOC122328356
XM_043224442.1 mRNA downstream 79486 7774301 ~ 7782717 (-) True kif3b
XM_043224185.1 mRNA downstream 336702 7522064 ~ 7525501 (-) True npbwr2b
XM_043224019.1 mRNA upstream 55866 7922253 ~ 7932104 (-) False tm9sf4
XM_043224018.1 mRNA upstream 55866 7922253 ~ 7932104 (-) True tm9sf4
XM_043225407.1 mRNA upstream 66056 7932443 ~ 7954995 (-) True LOC122329207
XM_043225560.1 mRNA upstream 112504 7978891 ~ 7985474 (-) True gata5
XM_043225269.1 mRNA upstream 688120 8554507 ~ 8557031 (-) True LOC122329065
TU230401 other downstream 583880 7276448 ~ 7278323 (-) True G155596
TU230379 other downstream 858716 7000585 ~ 7003487 (-) False LOC122329304
TU230386 other downstream 865394 6994181 ~ 6996809 (-) False LOC122329304
TU230394 other downstream 880414 6966827 ~ 6981789 (-) False LOC122328436
TU230380 other downstream 994922 6864425 ~ 6867281 (-) False ccm2l
unassigned_transcript_2580 other upstream 319510 8185897 ~ 8185988 (-) True trnai-uau_5
unassigned_transcript_2581 other upstream 319808 8186195 ~ 8186288 (-) True trnai-uau_6
unassigned_transcript_2582 other upstream 320430 8186817 ~ 8186910 (-) True trnai-uau_7
unassigned_transcript_2583 other upstream 320730 8187117 ~ 8187210 (-) True trnai-uau_8
unassigned_transcript_2584 other upstream 322426 8188813 ~ 8188906 (-) True trnai-uau_9

Expression Profile