RNA id: XM_043225070.1


Basic Information

Item Value
RNA id XM_043225070.1
length 1610
RNA type mRNA
GC content 0.46
exon number 12
gene id zgc:171775
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 6515811 ~ 6521844 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaacatatttttagttgAGGAGCAAGGACAGGCGGAAGTCGGGTGCACGCTGTTCACCGCAAAAGACGAACGTCAGCTGTTAAAATCctaattgttgtttgttttggatgAGCGGGGAGCGAGGACCCTCACCTCAATCACGTGACGGCGAAGGTGCGTGGAGGTGGGCGTGTCCTCGCGAGACTGCCTGGCGCTCACCTGGGTCGCCGTGAACAGTCCGAGTGGTCGAGCGCTGCTCTTTGACGCGCCGCCTGATTTATACTCGTAAGGTGGACGAGCTCATGGCTTCACCTCTGAGAGCGGGGTTCCACAGGCTGGAAATCCAGAAAACTACATGGGATGTTCCTGACCGATACACCTCACTCAAGCCCGTTGGCTCTGGAGCTTATGGGACAGTGTGCTTTGCAATTGACCAGAAGACAAAGGAAAAGGTAGCCATTAAAAAGCTGTACAGACCATTCCAGTCTCTGATCCACGCTAAACGTGCCTTTAGAGAACTCCGGCTGCTCCGTCACATCCAGCACGACAACGTGATCTGCCTGCTTAATGTCTTCACCCCCGATTTCACACTGGAGAAATTCGATACTTTCTATATGGTGATGCCGTTTGTCGCTCAGGATCTTGGGCACATAATGAAGAAGAAACAGTTAACCACCAAAGTCATCATTTACCTGTTCTATCAGATACTGCGAGGACTCAAGtataTCCATTCTGCTGGGATCATTCATCGGGATCTTAAGCCTAACAACCTTGCAGTGGATGAAAACTGTGAATTAAAGATCCTGGACTTCGGACTGGCGAGACACACTGAAACCGAAATGACGGGCTATGTTGTGACACGCTGGTACAGAGCCCCTGAAGTCATTTTCAACTGGATGCATTATACTCAAACAGTTGATGTTTGGTCTGCTGGCTGCATCCTGGCTGAGATGATAACAGGAGACGTGCTTTTCCCGGGAAGTGACAGCATTGACCAGTTGAAGAAGATCCTCAGCATGACCGGCACACCAAGCTCAACGCTTGTTCAGAAAATGCAAAGCAAAGATGCACAATCATATGTCCGCTCACTTCCAGTACAAAGGAAAAAGGCCTTCAAAGAGTTATTTTCTGATATGGATCCTAATGCCATCGACCTGTTAGAAGGCATGCTGGTTTTAGACCCAGAGGTCAGACTTACTGCAAAAAGCAGCCTTTCGCATCCATATCTTTCTGAATTCCATGATCCTGAAAACGAGCCTGTGTCTCCCGCATACGATGATTCCTTTGAGAGTCTGGATCTGGCTGTCAGCGAATGGAAGAGTCTTATCCACATGGAGATCATGACATTCGACCCAGACAACCCCAGGGTGACTGCAACATGATACCTCATATTCACATCCGGAGAACGCCACTCCAAAGAATTCAAGACACTGATGAGCTATTGTTTGCTTTTGTCAAATGCCATTGGCTAGATGTGTTTAAACACAGTTATCGAACACAGTTCAATAGATATTATCCTTTTTTTGTTACTAAACATTAACTGAATACATATTGACAGCGTCTAAGTGTGTAAAACAGCTTTTACGGTGAGGAaagataaaagtgtaaaataaataaatgatttttgtggA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004707 MAP kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230127 lncRNA downstream 1718 6509715 ~ 6514093 (-) True G155392
TU230121 lncRNA downstream 16062 6488624 ~ 6499749 (-) False G155391
TU230119 lncRNA downstream 26967 6485439 ~ 6488844 (-) True G155391
TU230159 lncRNA downstream 30896 6484654 ~ 6484915 (-) True G155413
TU230114 lncRNA downstream 163986 6349007 ~ 6351825 (-) True G155388
TU230195 lncRNA upstream 90149 6611993 ~ 6612524 (-) True G155435
TU230208 lncRNA upstream 102575 6624419 ~ 6625268 (-) True G155443
XR_006247875.1 lncRNA upstream 272259 6794103 ~ 6804919 (-) True LOC122328996
TU230288 lncRNA upstream 313531 6835375 ~ 6835589 (-) True G155508
TU230378 lncRNA upstream 315285 6837129 ~ 6838566 (-) True G155578
XM_043224781.1 mRNA downstream 57892 6454153 ~ 6457919 (-) True krt18a.1
XM_043224782.1 mRNA downstream 62472 6450959 ~ 6453339 (-) True krt18a.2
XM_043225115.1 mRNA downstream 80836 6422212 ~ 6434975 (-) False eif4ba
XM_043225114.1 mRNA downstream 80836 6422212 ~ 6434975 (-) False eif4ba
XM_043225113.1 mRNA downstream 80836 6422212 ~ 6434975 (-) True eif4ba
XM_043224003.1 mRNA upstream 76874 6598718 ~ 6602083 (-) True slc16a7
XM_043224004.1 mRNA upstream 76874 6598718 ~ 6602072 (-) False slc16a7
XM_043224005.1 mRNA upstream 76874 6598718 ~ 6602063 (-) False slc16a7
XM_043224770.1 mRNA upstream 186868 6708712 ~ 6713207 (-) True adrm1
XM_043224772.1 mRNA upstream 186868 6708712 ~ 6712695 (-) False adrm1
TU229892 other downstream 1035992 5477914 ~ 5479819 (-) False LOC122329286
TU229887 other downstream 1060764 5454417 ~ 5455047 (-) True G155227
TU229703 other downstream 1681291 4831818 ~ 4834520 (-) False LOC122329181
XR_006247892.1 other downstream 2320813 4173914 ~ 4194998 (-) True LOC122329268
TU230261 other upstream 209007 6730851 ~ 6731886 (-) True G155489
TU230276 other upstream 244764 6766608 ~ 6822978 (-) False rps21
TU230273 other upstream 251734 6773578 ~ 6822978 (-) False rps21
TU230275 other upstream 251734 6773578 ~ 6822978 (-) False rps21
TU230277 other upstream 251734 6773578 ~ 6822978 (-) False rps21

Expression Profile