RNA id: XM_043225071.1


Basic Information

Item Value
RNA id XM_043225071.1
length 2607
RNA type mRNA
GC content 0.49
exon number 15
gene id ikbkg
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11314705 ~ 11321862 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGAAACAGCTCAGAGTGTGATGAAGCGCGGAAGTACCGAGGGGGAATTCCTCGACAGTCTCTACCTGTCCGAGCTTTTCTGGGTATTTCTGTCTAGTTCACTTTATAAAACTCGATTCTGACTTTCCAGCTCTGCGAGGCTGAAGATGTTTGCCGACCTTAGCGTCTGTGGTCGGCTGTAAACCGGGCCGTGTTTCCTTGGCGGAAGATCGACGGACGGGGGATCTGTGTTAGCGCAGTTAGTTAACACTGCGAACGGCTTGATAAGGATCATGGTCCAGCCGCAGCCATCAGGTGGTTGTACTCTGCAGTGGGAGCTGACTGGAGAGGAGACTGTGGGTGCCAGGGGTCAAGGGTCACTGATGGCCAGTTCACAGGGGTCTATGGTGGTCCCTCCTGAATTAGCTGGAAATGAAGTGGTCCATAGACTCATAACAGATAATCATCAGCTACGAGAGGCTCTGAAACGAAGCAATGATGCCCTCAAAGAAAGATGTGAGGAGATGGAGGGGTGGCAGAGGAGGTCAAGAGAGGAGCGCGAGTTCTTGAGCTGTAGATTTCGTGAGGCCAGAGCTTTAGTGCAGCGACTGGCACAGGAAAACCAGAGCCTGTTGGGACAACTCAACCACAGCATCGGTCAAACAGGGAGTCTGAGTGTTGGCATCTCTAAAGAGACTGGAAGCCAAGGCCAGGACCAAGAGCAGAAGTGCACTAATGTAGAGAAGAATGTCCCCATGGACTCACCAGAAGTATTAAATGAAGCTGTACTGACAGACCGAGCTGAAGGAGACGCTGACAGACACACAATGCCTCAAAGTTTGccTGCTGAGGGCTCTAATGAATTTCTGAAACTGCTGAAAAGCCACAAAGAGAAGCTGGAGGAAGGGATGAGGGCGCTGAAGAGGAGGAATGAGGAGCTGGAGAACGAGAAGGCGGAcaatgagaaagagagggaaaatcTCCTCGCCACCGTAGAGCAGTTACGCTCCAAACTCAGTCAGAATGGTGGTGTTACTGAAGAGTCAGTCCAGCAGGCATGTGCTCTCACCGTTCCTGCAGAAAGCTCTCACTTGGCTAAACTAACTGAGCAGCTTCAGGCTACACAAGGCAGGTACAGGGAGCTCCAGGAGAAGCTGGACTGTCTTCAGAAGAGCTCTGTTCAGAGAGACAGAAATGAGGCTCTACTCAAACAGAAGGAGAAGGACTTTGTTCAGCTGACAAAGGATAGTGAAGCTCTGAGAGCTCAGGTCACGTCCCTTCTTGGCGAGTTGAATGAACGACAAAATTGGCTGGAGAAAAGCGAAGCAGAGAGACGAATTTTAGAGGATAAGTTGGGCAAGAAGAGCGAACGCCTGCAGACTTTAGAGAGAGACATGGAGCAGCAGAAGAAGCAGCACAGTGTGACCGTGGACAATCTGTTACTGCAAACACAGAACCTAGAGACTGCACTGAAGAACGAGAGGCTCGTCATAGTGGAGGAGAGGAGGAAGCTGGCTCAGCTCCAGCATGCGTACACATGTTTGTTCCAGGATTATGACAAAAAACTCAAAAGTGAAAAGCAAGCCAATCACAGGAGTGGAGAGGCAGACACACTAGCTAACAGGTTAGCAGAAGCTGAGAAAGCTCTGGCCCTGAAACAGGATCTCATCGATAAACTCAAGGAGGAAACAGAGCAGCTAAGAGCTGCCCTAGAGACTATACCAGTGCTGAATGCTCAGGCAGAGATCTATAAGATGGACTTCCTGGCTGAGAGGGAAGCCAGAGAGAAACTTAATCAAAAGAAGGAAGAGTTGCAGGAAGAGCTAAGCAAGGCACTAGCTGAAATAGACAGACTCAAGCAAGAAGGAACCTCAAGAGCTCGCATTGAAGAGATGCAACAGAGACATTTGGAGGATTACAGGCCTCGTCCACACCCACCTCCCCCAGTCGcgCCATTCGCAGGAGCAGCCATGTTCAACCCCGCCCAACCTCCATCTGCACGCAGAAGAGACGAAGATCAAGACGGGCTGCCCGATTACTGCTGTCCCAAATGTATGTACAAGGCTCCGGACATGGACACCCTGCAGATTCACGTCATGGACTGTATCCAGTGAGGGGAAGAGATGTTTCAGATGATCTCTGGACACCTGAGTGAACTAGAACAACAGAAAATACCAGAAGTGAAAATCAAAACCATGCTAGAAACAAGAACACCAGACCCATCTAAAGACTTTGAACATTTAATCCTGCTGCAGATTGACTTGAAGTAGACCGAtagcagatgtttttatcatgtgGCTATAGAGCAGTCACCGTGTTTGTGTACACTTAGCGTGTGTATCTCTTTACAAAAGAAGCTTATCTGTACTGCCTTTCTGTGACAGCGTAGCGTAATGTACTGCACGTGTGAATGTTTGCGTCTGCTTTACGTCTGCACACACCTGACAGTGACACTGTTTCCTGTATAACTGTGGTATTCGTTGATCTGGATGTACGCACTCTTGAGGATTCACGCCTGTGTTAATATTGTGTATTATCTCGGCCGAAGTGAATACgaaaaaactttgaaaaaaacTTTGTACAGACTATTGTTATGGagagatttaaagaaataaaaatatgagtaTG

Function

GO:

id name namespace
GO:0007252 I-kappaB phosphorylation biological_process
GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling biological_process
GO:0005515 protein binding molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
K07210 IKBKG, IKKG, NEMO; inhibitor of nuclear factor kappa-B kinase subunit gamma

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232149 lncRNA downstream 69885 11242600 ~ 11244820 (-) True G156762
TU232146 lncRNA downstream 151686 11162664 ~ 11163019 (-) True G156759
TU232099 lncRNA downstream 238744 11071410 ~ 11075961 (-) False G156726
TU232181 lncRNA upstream 31297 11353159 ~ 11353828 (-) True G156785
XR_006247856.1 lncRNA upstream 54315 11376177 ~ 11376688 (-) True LOC122328925
TU232213 lncRNA upstream 217761 11539623 ~ 11540045 (-) True G156812
TU232436 lncRNA upstream 440578 11762440 ~ 11763023 (-) True G156962
TU232440 lncRNA upstream 441847 11763709 ~ 11850582 (-) False atp2b3b
XM_043225073.1 mRNA downstream 1115 11311561 ~ 11313590 (-) True ssr4
XM_043224072.1 mRNA downstream 3803 11305279 ~ 11310902 (-) True sephs3
XM_043225555.1 mRNA downstream 54518 11245528 ~ 11260187 (-) False fam120c
XM_043225554.1 mRNA downstream 54518 11245528 ~ 11260187 (-) True fam120c
XM_043225473.1 mRNA downstream 73117 11238450 ~ 11241588 (-) True hsd17b10
XM_043224640.1 mRNA upstream 793 11322655 ~ 11324876 (-) True zgc:158296
XM_043224639.1 mRNA upstream 3631 11325493 ~ 11351439 (-) False arhgap4b
XM_043224638.1 mRNA upstream 3631 11325493 ~ 11351439 (-) False arhgap4b
XM_043224636.1 mRNA upstream 3631 11325493 ~ 11351439 (-) True arhgap4b
XM_043224132.1 mRNA upstream 33018 11354880 ~ 11356679 (-) True zgc:103759
TU232124 other downstream 209482 11100744 ~ 11105223 (-) True G156746
TU231697 other downstream 636656 10675684 ~ 10678049 (-) False LOC122328798
TU231532 other downstream 947336 10365543 ~ 10367369 (-) False LOC122328779
TU231517 other downstream 1075432 10237096 ~ 10239273 (-) False ankrd52a
TU231501 other downstream 1082786 10230546 ~ 10231919 (-) False ankrd52a
unassigned_transcript_2621 other upstream 196148 11518010 ~ 11518081 (-) True trnah-gug_32
TU232410 other upstream 419538 11741400 ~ 11746620 (-) False LOC122328546
TU232414 other upstream 419538 11741400 ~ 11746620 (-) True LOC122328546
XR_006247903.1 other upstream 420808 11742670 ~ 11742803 (-) True LOC122329333
TU232418 other upstream 422257 11744119 ~ 11746620 (-) False LOC122328546

Expression Profile