RNA id: XM_043225073.1


Basic Information

Item Value
RNA id XM_043225073.1
length 989
RNA type mRNA
GC content 0.46
exon number 6
gene id ssr4
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11311561 ~ 11313590 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGGTGACGTGTCTGTGCGCGTTTCATTGGGTGAAGGCTAGCTCTGCTCTCTTTCCGCAGGTTTGACTTGAGTAACGTTAGCGGTAGATTCAGCTGCCCGGGGACCGACACAATGAGAGTTATAACAGCGATTTTGGCTCTTTGTCTTAGCCTGTGTGCAGCCGAGACTTGCACAGACCCGGTCATTTCTCCGTCTTCGTACACGACGACAGACGCGCTCATCTCCTCCGAGACCGTCTTCATCGTCGAGTTGAGCCTGGCGTGTGCGAACGGAGCTCAGAGTGTTGCTCTCTATGCAGACGTCAATGGCAAACAGTTTCCTGTGACCAGGGGCCAAGATGTTGGCAAATACCAGgtctCATGGAGTGTCCCTCATAAGCAGGCCAGCTCAGGCACATATCAGGTCAAGTTCTTTGATGAGGAGTCTTACAGCACTCTAAGAAAGGCTCAAAGAAACAATGAAGACGTTGATGCAATCAAGCCTTTGTTCTCTGTCAATGTGGATCACAGGGGTGCATGGAGTGGTCCCTGGGTGTCTACTGAGGTCTTGGCTGCTCTGATTGGCATTGTGGTCTACTACCTGGCCTACAGCACCAAAAGTGCAATCCAGGCTTGAGATGATGAGTCAAGCCACCACGCTGTTCAAACTGGTCTTGAGGAATTCCCTATTCTGATGtttaatattcagatttaagTGCCATGGACAGCTTGGCTAAACCACGAGACCGGTTTGTTGCAGAGCTTGGAGAAAAATGTCAGTATGGACATTAATTATAACGGCGgtcatgttcattttttttcttttttttaaatctcgaatttaagaaataaaacttttttcagtTGTGGTATTAATGTTAAACTTCAGAAAGACAACGCCTGAGGTGGTTTACCTGTGACTTACCATCATAGTCCAGTTCTCTATTGTGAAGTGTCCCAAATATCAATGAAATTCATTGACTATGGGAATAAACAATTTCCTCAAAGTT

Function

GO:

id name namespace
GO:0071391 cellular response to estrogen stimulus biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K04571 SSR4; translocon-associated protein subunit delta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232149 lncRNA downstream 66741 11242600 ~ 11244820 (-) True G156762
TU232146 lncRNA downstream 148542 11162664 ~ 11163019 (-) True G156759
TU232099 lncRNA downstream 235600 11071410 ~ 11075961 (-) False G156726
TU232181 lncRNA upstream 39569 11353159 ~ 11353828 (-) True G156785
XR_006247856.1 lncRNA upstream 62587 11376177 ~ 11376688 (-) True LOC122328925
TU232213 lncRNA upstream 226033 11539623 ~ 11540045 (-) True G156812
TU232436 lncRNA upstream 448850 11762440 ~ 11763023 (-) True G156962
TU232440 lncRNA upstream 450119 11763709 ~ 11850582 (-) False atp2b3b
XM_043224072.1 mRNA downstream 659 11305279 ~ 11310902 (-) True sephs3
XM_043225555.1 mRNA downstream 51374 11245528 ~ 11260187 (-) False fam120c
XM_043225554.1 mRNA downstream 51374 11245528 ~ 11260187 (-) True fam120c
XM_043225473.1 mRNA downstream 69973 11238450 ~ 11241588 (-) True hsd17b10
XM_043224149.1 mRNA downstream 100753 11175947 ~ 11210808 (-) False tafa1a
XM_043225072.1 mRNA upstream 1115 11314705 ~ 11321862 (-) False ikbkg
XM_043225071.1 mRNA upstream 1115 11314705 ~ 11321862 (-) True ikbkg
XM_043224640.1 mRNA upstream 9065 11322655 ~ 11324876 (-) True zgc:158296
XM_043224639.1 mRNA upstream 11903 11325493 ~ 11351439 (-) False arhgap4b
XM_043224638.1 mRNA upstream 11903 11325493 ~ 11351439 (-) False arhgap4b
TU232124 other downstream 206338 11100744 ~ 11105223 (-) True G156746
TU231697 other downstream 633512 10675684 ~ 10678049 (-) False LOC122328798
TU231532 other downstream 944192 10365543 ~ 10367369 (-) False LOC122328779
TU231517 other downstream 1072288 10237096 ~ 10239273 (-) False ankrd52a
TU231501 other downstream 1079642 10230546 ~ 10231919 (-) False ankrd52a
unassigned_transcript_2621 other upstream 204420 11518010 ~ 11518081 (-) True trnah-gug_32
TU232410 other upstream 427810 11741400 ~ 11746620 (-) False LOC122328546
TU232414 other upstream 427810 11741400 ~ 11746620 (-) True LOC122328546
XR_006247903.1 other upstream 429080 11742670 ~ 11742803 (-) True LOC122329333
TU232418 other upstream 430529 11744119 ~ 11746620 (-) False LOC122328546

Expression Profile