RNA id: XM_043225074.1


Basic Information

Item Value
RNA id XM_043225074.1
length 4137
RNA type mRNA
GC content 0.42
exon number 11
gene id zgc:113278
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 1087192 ~ 1095438 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCTTCCGGCACACGTCGTACGCGGGTGTGCGTGTAGCAGGGCTTCGATGACTGACTAGAGTGAATTTCCCCGAGGTCTGCTTCACCTGCGCGTCTCTGCCCTGATCAGGAGCCTTTGTCCCCCAGCGAGAGAAGAGCGATGGGCTTCAGAAAGAAGAACAAGAGTCCGCCCGTGCTGAGCCACGAGTTTGTGATCCAGAATCACGCGGATATGGTGTCGTGTGTGGCCATGGTCATTCTGCTGGGGCTCATGTTTGAGgTTACAGCAAAATTTGCGATTATGTTCATTACAGTCCAGTACAATGTCACGCAAAGCCTGGACACAGACGCAGAAGAGAAGCCTGAGCCTGTCAACTACTACAAATACGGGCCCAAGGACATCGCCACTGTCTTCTTTTACCTTCTCATTGCCATAATTCTTCATGCCCTGATTCAAGAGTACATACTCGACAAAATCAATCGTCGGCTGCACTtgtccaaaacaaaacacagcaagtTCAACGAGTCGGGGCAGCTGGCCACCTTCTACCTGTCCTCCTTCGTCTGGGGCTGCAGCATCCTCACCAATGAGGAGTTTGTGACGAATCCAACCTTTCTTTGGGAAGGTTATCCTCACATCCACATGGCTTTCCAGGTGAAGTTTTTCTTCATCTGTCAGATTGCCTACTGGTTCCATGCTCTTCCTGAGCTGTATTTCCAGAAAGTACGAAAGgaGGACATTCCACGTCAACTTTACTACATTTGCCTTTATATCTTTCACATCACTGGTGCCTACGTCCTTAATCTTCACCGCCTGGGTCTGGTTCTTCTGGTGCCACATTATCTGGTGGAGCTGCTCTTCCACGCTTCGCGACTCTTCTACTTCAGTGACGAGAACAAGCAGAAGGGGTTCACTCTGTGGGCTCTGCTGTTTGTCATCACTCGCCTCCTGACGCTCACCGTCTCCGTCCTGACGTTTGGCTTCGGCCTGTCCCGCACAGATAATCAGGGATTCTCTTTAGCAGAGGGAAACTTTAATGTTCTGACTGTCAGGATGACATGCCTGTCTGCCATCTGCCTGACCCAGGCCTGGATGATGTGGAAGTTCATCAATTTCCAACTGAAGAAGTGGAGAGAGCAATCTCAAATCCAGGCCAGCAAGAAGAAAGCTGTCAGCCCGAAAAGCAGACCCAGCAAGAAGGACTCTCGGGGTGGTTCAGTCAATGGAGTCATGAAACCAGATGACAAGACATCGCCAAGAGCAAGAAAATCTAAAGCCTCGTAAGAGTGCCCAAAATGTGATGCTCTGTTTGAACTTTAGAAAAGAAACAGATTTGATAACTGCGAAAAGAACCACAGGAACAAACTAAGGAACTTAGTTGTACGGCATGGTTCACGTTTTAtttgtttcctgtttttttcctgtctgcatcttttaaaatgaattatagatTTCTAATCGGTCGTTACATCCATATGCTAGACTTTCAGCAAGACTGAGAGGTTTTTCTGAAGGTTTTGTGATTGGCTCGAAGGGTTAAAGATGAGTTGTGCGGTTTAAGTCCAAGGTCTGCACgacagaaatgtttttccaaGTCGGTCTTGCTCAGAAGATGAAGCATTTATCCTGAAAACAATTAAACCCCATTCAATATTATTTCTGCGCTTCTTATGAAGCACAATGTGTGGACCGAAGCGTTTGAGAAGTGTCCTTTTGTTAACCTTCAGCCCCTCGGTCCCATCCGCTACTATGAAGCTCAGTGAGAAACCCCAATATGAAGAGGCTGAGGTGGCCAAGGACTGCTACACGACTTGTTTTACAGAGCTTCTAATGACCTGAGCTGTGTGATTTTTACACTTCGATACTCAGAACGACTGATTTTAGCGTCCCGTTTGCGTCTGAATGTTGTTGTTTGAGGAGAATCATTTTAGAATAGTTTTTTGGCGACTGCGTTCGAGGTGGAGACGTTTGTGAGAGCGCttggatttagtttttaatgaacTGTGGACGAGGTGATTCGATGATGGCTCCTCCTGCTGGTTTGGGTGATCTATTTCCAAGGATTCATATGCCTTTTTTCAGAAGGGTTCATATGCTAACACAGGACTATTAAAGAGTCTAACTGGCGAGGTTTGGGGCCTTGGTGCTTATCATGGATACCTTACAGTTATCAATATAATTCATAACACACGGGTCAATGGTGATATCGCTTTTAGTTTCAGTTGCAAAAGCCTTTTTTACTAGGACGTTGTGTAACGCAATGAAAGCTAGccttttgtttaaaattctCCAAAAATCTGAAGAGGGTTTTGAGCGCAGGAGAAAGATTGCCGGTGAACTTCCTCCTAAATGAGTTTTACAGACATTTATTAAGCCCTGAAGCTCTGTTTTTATGTGAGAAGTGCTGGAATATCACTCTTTCAACACTTTGTGGCCTTTCTCCTTGCGTTTGAGTGAACCGCTCTCCGTTATCTATCAGACCGCGTCTGCCGGCATGTAGTTTATATGAAACCATATGATTCTTTAAGTGTCCTTAAGCTGACAACAGtagaagttgttgtttttttctcggTTTGAGCACCGTTACGCGTTCTCTGTTTATTAGTGCGATGAGAGAGTTCGATTATTAAGTTGTGCATGTCGCGATCCGTGAAAGAATTGCCTCACTGAAGCATTTAACGCCTAAGAGCATAAATAAAACCGTAGGCATGCAATCAAAAGTggctgtctgttttttttttttttttttttactttttgtataaTGAAGTGTAAAAGCAAGACACAAACTGCCGGTTTATTTTGTGAACCCTGTCTTAACACGCACGCCGTCGGATCATACAGGCTCATATGCACACGCTGCGCTGCGTACTAGTTGCCAAATTACATGAAAGGGACTTGCTGCGTAAAAGTTCGAAGTTCACGGTTCAGTTTGTAGGTCAAGTGCCTAAATCTGGCTGCAGAACAGTGGTTTGCTTTAGTTTGGTGTATTAGAGTCCGAGATTTCATAGGACCTTTCACCGTGATATTCGTAACGCGCAGAGAGAGAGGATCTGTACCTGCTGTACGTGATGGCTAATGCTGTGGTGAAATAACGCCTGTACGGATCCGCCTCACGcatacttaaaatgtaaagctTTGTTAGCAGCGCAAAGCTAATTCTTGAAATTTCTAGTCGGTGCTGGTTCTTATCTAACATGTATGTGGAGTGAAGCAGATTTGATAAATACTAAAATCTCCCACGTTTACACACAGATGGTTTTATGTCCCAAATCCCTGATTAACctccatttcatttaattttttcctcatGTCTTTGAGGAAACTgatttttgtttcgtttttttgttctgttagCTGACTAAACATGAAAGGAAAATCATTACCATCGAGTAATTCACTACTGAATAATTGTCagatttttaaactatttttctaGCGTTGAACTGTTGAGAGATGAACATTATTTAgagcatataaatattttactgcttatgggtttattatttttatactgtgtGGGAGAAGCTTTCTACCATTTCAGTGGGACTGCAAAAGATAAATACTTTTGGTGACTATAAATAGTGTGAAACAAATTTAAACGTTACTGCCGCTTTCcctgatttttttgtatttttttttgttttctcagtgttgttttgtttttgagattttgATTTGGGGTACAAACAAGTCTGTAAACTGTGCAAGTCttcattgtgtttctttttgaGTGGATAAAAACAGCGACAATGAGAATAATCTTCACTCACTCCCATTGTTCTGTCACGTGAGAAACTGTGCTGTTTTGATGTGGcttaattgttttgatttttgtgtatataaatgtaaatggggAGGGGGGGGCGGtcaaaaatacattgatttaCAATATTGTTTGCAGTGATCAGCCGTCGTCATAGTTCTTATaatatgtcaaattaaaagatGCACCAAAGCCTTCTGGAATATGAGATACACAGAACCTAAATTATTTTTCACCATGCTTTATGTAGTACAAGCACTGTTACTTTTCTAATGCTTGCCTGTATGTTGAGATATAttggtttttatataaaatgttgttaatatatgtatttatgcaagTCTGTGTGAtgctttttgtatgtttgtctTTTGATTAAATCTTTTGCTTAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K14010 TRAM1; translocating chain-associated membrane protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247797.1 lncRNA downstream 123615 960274 ~ 963577 (-) True LOC122328476
TU227875 lncRNA downstream 187426 898180 ~ 899766 (-) False G153893
TU227921 lncRNA downstream 205008 865811 ~ 882184 (-) False vgll4a
TU227919 lncRNA downstream 205008 878522 ~ 882184 (-) True vgll4a
TU227922 lncRNA downstream 220445 865477 ~ 866747 (-) False vgll4a
TU227992 lncRNA upstream 110041 1205479 ~ 1206158 (-) False G153966
TU227995 lncRNA upstream 110041 1205479 ~ 1206602 (-) True G153966
TU227998 lncRNA upstream 111262 1206700 ~ 1207587 (-) True G153967
TU228019 lncRNA upstream 293924 1389362 ~ 1393135 (-) True G153984
XR_006247811.1 lncRNA upstream 324419 1419857 ~ 1420454 (-) True LOC122328606
XM_043224659.1 mRNA downstream 5447 1077808 ~ 1081745 (-) True arl6ip5b
XM_043224652.1 mRNA downstream 11525 1070758 ~ 1075667 (-) True srsf6a
XM_043224654.1 mRNA downstream 16988 1065562 ~ 1070204 (-) True si:ch211-10d23.5
XM_043224673.1 mRNA upstream 69585 1165023 ~ 1184666 (-) True b4galt5
XM_043225357.1 mRNA upstream 186683 1282121 ~ 1344566 (-) True LOC122329156
XM_043224122.1 mRNA upstream 266564 1362002 ~ 1371474 (-) True LOC122328434
XM_043225358.1 mRNA upstream 299991 1395429 ~ 1401790 (-) True LOC122329157
XM_043224235.1 mRNA upstream 387274 1482712 ~ 1494028 (-) True LOC122328511
XR_006247825.1 other downstream 22503 1056012 ~ 1064689 (-) False l3mbtl1
unassigned_transcript_2578 other downstream 67349 1019772 ~ 1019843 (-) True trnam-cau_118
XR_006247804.1 other downstream 301313 779085 ~ 785879 (-) True ndnl2
TU228038 other upstream 412260 1507698 ~ 1512291 (-) True smim29
TU228039 other upstream 412372 1507810 ~ 1512291 (-) False smim29
TU228042 other upstream 412372 1507810 ~ 1512329 (-) False smim29
TU228037 other upstream 412447 1507885 ~ 1512291 (-) False smim29
TU228040 other upstream 412447 1507885 ~ 1512291 (-) False smim29

Expression Profile