RNA id: XM_043225077.1


Basic Information

Item Value
RNA id XM_043225077.1
length 3273
RNA type mRNA
GC content 0.47
exon number 24
gene id arhgap4a
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 14246442 ~ 14257712 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTTACTGTCAGCACACAGTGACCGAGTGAGTGAGGAAGGAGGAGAACGCTCTTGTCTTTCACTGTATCACTCAGTGCTTGTGCGCGAGAGGAAAAAGGGTTTCTCAGGGCTTTGGGTTTGGACAAGTGATACTAAGGGTGCGTGGAAGCTGTTTAAGAAGAAATATTGAGAATGCCAATGTGAACACCTGCGGAAATTACTTAAGCTACAATGTCGTCCCACGTCAAACTGAGGAGAGGAGTGGGGACAGCGGACTATGATACACAAATGAAAGAGGTGCGTTTGCAGCTGGCGGAGCAGTTGAGGATATTTGACGGTCAGGTGGAGCAGAAGACTCAGGTGTTCCAAGATCTGATGGATTTTTTTCGCAGACGAGGCGAGATTGAGGGGGAGTACGCCCGCTCCCTGGACAAACTGAGTGACAGGTTCTCCTCCAGAACCAGAAAGAAGGAGCCCAGCCATCAGTCTGTGGTTAATTGCTGGCAGGTGCTGTTGATGCAAACACGTCAGGAAAGCAAAGATCACAGTTTCTTGAGCGACAGCTACAGCAACACTCTGCCTCAGCAGCTTTCACACTGTGTTGAACATGCCCAACGCCTGGCCAAACGGAGCAGAGACATTTACACCCAGTTACAGGATGGACTTCTGAAGGTCACTGCAGAACTGCATACTGCCTTGAAGACATATTACCAATACTACACCGAGTTCTTGTCTGCAGAAAGCAAACTAAAGGAGGCAGTCAAACTGGAGGAAAAGCTCAAGCAAAGTGCTTCTAAAAAGATGGAAAGACAAATAGAGAAAAGGCAAAGTAAAGTTCAGGAGATTCAGCTGAAGTGCACGAAAGCACGCAATGACTACCTCCTCAACTTGGCTGCGgcaaatgcatgcatgaataaatactaCCTTCAGGATCTCTCCACTCTCATAGACTGCTGTGATCTGGGTTACCACCAGTCCATATCCAAGGTGTTTCGTTTTTACCTGGCCAGTCAACAATGGGCCCAGCGGAACTTGAGCGCTGGGATGCAGCAGCTGGACACAACCGTGTCAGAACTGAGCCAGAACCAGGACAGAGACGCTCTCATGCAGGCCAACATCTCTGCCTTTTGCCTGCCCCTCCGCTTTCAGTACCAACCCTACGAAGGCGACCAGGCGGTAGAGGTGTCAGCAAAGTGTGAAATGATGGGAGAGCTGGTAACTCGCTTCCAGCAGCTGCAGTCTAGGCTGTCTTCTGTCACCACAGATGTTGAGGAGTCTGGCAAATTACTTCAGTCAGCTCAGTCTTCCATGTTGGATGGTATTGTCGAGGACACCTTTGGATCTACTCCAGACTTTCCTAGTTGCTCATCATTACCAGATGGGAGCAGTGATATATCAGTCAGTAAGACCCATCAGCTGAAACGTAGAGCCAGCCTTCCGGACACTGAGACTTTGTACTTCTCGAAAGTCAGGGACCATCTGTGTAACAGCTCTTTAATATCAAAACTGGAGGCCAAACATGACCTGCTAAAGGTTGCCATTCAGAAAGctgaaaGTGTTGCCAGTAACCATTCCAGGACACGCTCCAGAAGATCTGTGCGCCACAAAAAAAGTTACCCTGGTTCACAGATCAGCCAGAAGCTTTTCAATGGGGATCTACCATCATACATCCAAGCATCGGGACAGCTCATTCCTTCAGTGGTGGAGAGCTGCATTCGCTTCATCAACCTCAATGGTTTACATCACGAGGGATTGTTCAGAGTGCCGGGATCTCAGATGGTGGTAAATCGGCTGAAGGATGCGTTTGAGAAAGGAGATGACCCACTCGATGATGGGGGGTGTGACATGGACTCTGTGGCTGGAGTGCTGAAGCTTTATTTTAGAGGACTAGAGAAACCTCTGTTTCCTGAGGACAGTTATGAGCAGCTGATGGAATGTGGGCAAATCGATGATGAgacaaaaaaagtttcacaGCTAAAGTTTGTCATCTCCTCGTATCCTACCTCGCTCATCATTGTCATGAGATATCTTTTTGCATTCCTTCACCATGTCTCCCAGTACAGTGACGAGAATATGATGCAGCCCTATAACCTGGCGGTGTGCTTTGGTCCCAGTCTGGTGAGGGGGCCAAACAACGGCGATGCGGCAGAGCTTCTGCGCATTAACTCACTGGTCAAGAGCATCATTACTCAGCACGAGAGCATCTTCCCCAGCCAGAATGAACTGCCTGGGCCAGTGTATGAAAAGTGCATGACATTAGAAGACGACGACTGTGAGGCCGTAGCAGAGGAAGGAGATGGAGAATCGGAGCAATTGCAAATGAAAGAAGCTAAAGATGAGTTGCAGGGAGTAGCCTTGTTCGACTACGTAGGCCGTTCTTCAGCTGAGCTGTCATTTAAACAGGGAGACCGTTTCATCCTACATACCAAAGCCTCTTCTGATTGGTGGAGAGGGGAGGTGAATGGGACAAAGGGCCTCATcccaaataaatatatcagtgtGTCATGCATGGATGGAGGCCAAGATCAGAAGGGGAAGGAAACGTTGAAATCCAGCATGGGCAGACAGCAGACAGAAGAAGAGCAGAAAGCAGAGCAAAATACGCGGCTCAAGGTCACAAATGACAAAGTTGGGCCAAGTCATGTTACTTCCGGAAAGGTTACATTACAAATACCCACAGGACAATATGTACAGCAAGGAAATTCTCCAGGAGCTCTGCGGAAAACAGTAGACCCTCAAATGAGACGATCCACTGCCGATGGAGGAAGCGGAGAGGAATACTCAACAGAAGTGGATAAGGATGTTCATAACATGATGCACTCAGTGTTTAAGGAGCTCCTCTTCCGCCAATCTTGCCCGGATCCAAGCACATCTACATCCCCAGAGATCCCCTCCTCTGTGCAAACGCCTTCAAACAAAGGACCAGCATGGAAAGGAAAGGGTTTATTTAGATCAGCTGACAATACAGACTGAACAAAAACTGTGTAACTAAAGTCAGAAACACAAGAAACATTAGGTGAAACATCAGCTCTGTTTATGGTAGGCCtatttttgtacagtttaaatgggtttaagaggcacttttaaattaatgtttgtttgtttttttatttaaatgtgtgtagcAGTAGTATTAGGttgccattttcattttcttaagaCACTTTGTTAGAACAaagggttgttgttgttgtttttattattttttacatttttaatttataatgtgaAAACTGCGAAAAATTATAATGCCACACCTACAaccctaaaaaataaaactaacattCCTGAGA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233262 lncRNA upstream 49747 14196431 ~ 14196696 (+) True G157531
TU233251 lncRNA upstream 98827 14147410 ~ 14147616 (+) True G157521
TU233224 lncRNA upstream 151396 14094078 ~ 14095047 (+) False c1qtnf12
TU233225 lncRNA upstream 151943 14094078 ~ 14094500 (+) False c1qtnf12
TU233223 lncRNA upstream 151985 14094078 ~ 14094458 (+) False c1qtnf12
XR_006247865.1 lncRNA downstream 6952 14264664 ~ 14273735 (+) True LOC122328961
TU233288 lncRNA downstream 46862 14304574 ~ 14343274 (+) False si:dkey-151g10.3
TU233289 lncRNA downstream 46862 14304574 ~ 14343274 (+) False si:dkey-151g10.3
TU233290 lncRNA downstream 46862 14304574 ~ 14343274 (+) False si:dkey-151g10.3
TU233302 lncRNA downstream 115865 14373577 ~ 14375050 (+) True G157551
XM_043225467.1 mRNA upstream 739 14240745 ~ 14245704 (+) True casp9
XM_043225464.1 mRNA upstream 7193 14233101 ~ 14239250 (+) True nol9
XM_043225465.1 mRNA upstream 21042 14217507 ~ 14225401 (+) False klhl21
XM_043225466.1 mRNA upstream 21042 14220225 ~ 14225401 (+) True klhl21
XM_043225303.1 mRNA upstream 97234 14141884 ~ 14149209 (+) True olfml3a
XM_043224952.1 mRNA downstream 36160 14293872 ~ 14298117 (+) True fam3a
XM_043224953.1 mRNA downstream 36160 14293872 ~ 14298117 (+) False fam3a
XM_043223953.1 mRNA downstream 41989 14299701 ~ 14343274 (+) True si:dkey-151g10.3
XM_043223955.1 mRNA downstream 41989 14299701 ~ 14343274 (+) False si:dkey-151g10.3
XM_043223954.1 mRNA downstream 41989 14299701 ~ 14343274 (+) False si:dkey-151g10.3
XR_006247900.1 other upstream 189622 14056685 ~ 14056821 (+) True LOC122329330
XR_006247901.1 other upstream 191943 14054364 ~ 14054500 (+) True LOC122329331
unassigned_transcript_2622 other upstream 2727907 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 2730572 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2619 other upstream 2732597 11513773 ~ 11513846 (+) True trnan-guu_36
XR_006247782.1 other downstream 41989 14299701 ~ 14343274 (+) False si:dkey-151g10.3
TU233368 other downstream 426278 14683990 ~ 14685316 (+) False LOC122328906
TU233419 other downstream 454435 14712147 ~ 14714533 (+) True LOC122328914
TU233447 other downstream 478289 14736001 ~ 14749402 (+) False LOC122328907
TU233466 other downstream 734638 14992350 ~ 14996145 (+) True G157656

Expression Profile