RNA id: XM_043225081.1


Basic Information

Item Value
RNA id XM_043225081.1
length 6186
RNA type mRNA
GC content 0.40
exon number 6
gene id avpr2aa
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 14257850 ~ 14272460 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGAGCGAGGGAAGAGAGAGGGTGAGTGAATGTAAGAGATATGTTGTTTATACTGAGCCCGGCTCAAATTCAATGCCATCAGTGCACCGGTGCTCACGTAATGTGGGAAATTAAAGCTCAGACACGCAGAGTCTCAGGAACCGCGGGACGTTTCTTGGAATACATTGCATGCTTCTATCTGGCGGATGCGTGAGGAAAAGAAGCTTCGAATAAACTTGGGTGAGAGCTTCAAAACTACAGCTTTGCAAGTTCACATGGGGTGGTGAAATACCTCAGCGCTCTTCATCAGCACAGCAGCTTTTGTGTCAAATAACCATCAACTGCAGCtttgaaaaactgaatgaaGCATTTCTCAGAACTCATGGATTATCGTTGCTGATTCGAGACAACAGAgCATGGAGACCTTCTCAGAGGAGGCGGGTTGGGAAGGATCCCTCCATGCAACCGTTGCATGGTCTAACTTCTCCTCCGCATTATCGGAGCATACTGGACTTAACAGTACTTTCAAAGGAGGCTCATACTTCTGGTTGGTGTCTCAAAACAACTCAGTAAACCCCACTCAGACACCCGGTCCGGTCAGGGTGCGGGACATATCTCTGGCTAAAGCTGAGATAGGAGTTCTGGGTCTGGTTCTTGCTCTCACAACACTAGGGAACGGTTTTGTACTGTGGGTTCTGCTGAGGCGGCGCAAATACAATGCACCCATGCACCTATTTATGGTCAATCTGTGTGTTGCGGATCTTGTGGTGGCGTTTTTTCAGGTGCTCCCGCAGCTAGTCTGGGATATCACAGAGAGATTTCAAGGTCCTGATGTCCTGTGCCGCTCAGTCAAATATCTGCAGATTGTGGGAATGTTTGCATCCTCTTATATGATTGTTGCTATGACTGTGGACCGCCATAATGCCATCTGCTGCCCCCTGCAGGCTTACAAAGGAGGGGCAGTTTCACGCTGGAATACACCCATCATGGTAGCCTGGGGTCTAGCCCTTGCTCTCAGTGTGCCACAGGTGTTTATTTTCTCCAGGTCTGAGGTCTCTCCAGGGGTGTTTGAGTGCTGGGGGAATTTTGCTGAGCCTTGGGGTCTGAAAGCGTACGTCACCTGGATGACTATAGCTGTGTTTCTGCTTCCTACCTTTATCATCACCATTTGTCAGGTCCGAATATTCAAAGAGATCCATGACAACATCTACCTGAAATCAGAACGTGTGGTTTCTGCTGACATGAAGAAGAACCTAGTCATTTTTCACTTTCCCATCTTCAAAAAGCGGGCCAGCACAGTCCGAGAGAGAGCTAGACGCTCACGAAAGAAGAGAGAAGCAAGGGAACTTCATAAAAAGAAGACCAACAGTGAGTCATCCCATTCTCACACCTGCAACTGTGAGGACGCACCAGAGCCAGACTGTTGTGACCAATCTTATCAGGATGGCTACAGTCCCGATAACCCGGCCTCACAGACTCACAGTTCATCTCCTGATGTGCTGCCTCGGATTCAGACTCACCCTCACACCATCTGGAGCAACTCTGCTGCTGTCCAGGCACCTCACAGGAACTCTTACAACTCCAATTCATCTTTCCCACCTTACCCCCTCCATCCACCTCTCACAGGTGTGTCGAAAGCTATGTCTAAAACAGTGAGGATGACTCTGGTCATTGTGCTTGTCTACACCTTGTGCTGGTCACCTTTCTTTATTGTACAGCTGTGGGCTGCCTGGGACCCCAATCCCCCTGACCAAGGAGTGGCTTTCACTATCCTGATGCTCTTAGCCAGTCTGAACTCTTGTACGAACCCATGGATCTACACAGCCTTTTCCAGCAGCGTTTCCCGTGAACTTCTCGCTCTTCTGCGCTGTCGGCCGAAGCAGCCCCGCAGGAGCTCAATGCACGACCACTCCAGCGACATAAACACCTCCACTACCAAGGACAACCAGTACTGACCCCTACCAAATAAACGAAACTTCAGTGTCAGCAGAGACCGCAATTTATCTGGGTGTATCTGTCCTACTCATGTGGAAGACATGTTGACTCTTCTGTTCAGAGGATTTGACGATGCCTCTTTAACCAAGTCAACTGTGAAGAGTGGCTTATTAATGACCAAAATGTATGGCATGAATTTGAGGATTTTATGCAAAGATGGACCCATGGAATAGTCGTGAGACTGATCTTTGCTGTCTAAAAACCGGATAAAGAACACCTTACTGACTGTcataataaacaggaaaatttaaataatttattgaacATATATTTCTTTGAAGTATTGTCCACTACTGTGTGCAAGATGGAGATAAACGTCTTAACTGCAGAGGAAGAAGAGATCAAGGCCTTAACCCCACAGCCATTTATCAGTCTTTCTGCCGTAATTCTTCTACAGATTCACAGCTTTTATGGCAAGAACCGAGGACGAATATGAATTATGTGATTCATGCATGGAAACTACACCCAGGGGACAGGTCAAATACATGCCAAACTGAAAAATCCAGGACTGAAAGTGATATACATTCTTTATTGGACAAGTATCTGACGAATGTCTTTTGTACACATTCAAGTacatttgtcatattttgacaaatttgtatatttaatgagGCATACTGAATGAGACTGAGGAAATAATAACTGTTTAATTTAGTGAAACACCAGCAGTGTGCAAACAGCAGCGATTTCAGTTCCtcgataatatatatataaatatgtatatataaagcttATTTAAAGTTGTGTGAGAATGAAAAGAATTAATATGAGAAGATGGTAAAGGAAAATTAGTAGCTGATTTGACACGTTGTACATAAAGGCTTAGattcaatgaaaacacacaagaTATACTGTAAATAAGTGAAAAGAAATATTCTATTGATACAGATGtttgtctaaatatatttattttgcattttaaagagaaaatgtcTTTGTCAAATCCTTGTGATAtaatccagaaataaaaatatcacataaaCGAATTCAAGATTCAAAGTCTCTTAAAATGAACCGAGCATAAGTACACTCTGAaatcatgttttgttgttgttatcagTAGACCAGACCTGTATTATTTGACTAAATATGACCTGTAGCTTTTGTagcttttattatgaaatggaAGTGAACTCGACCAAATGAACCAATCACCGCAGATTAGGAGGGGTTAGGAAAACGTAATCCTTGCACAAATCTTTTAGGAGTTGTtgagcaaataaagtaaaattaaatgcaaattctaagacaatgaaagtgttttttgaccttgcatgcatgtcaacctgttcttagggactcccaaaaccaaaatttgaatatttcaaaaacCAGAgggttttatgttaaaaaacatcatgatgtatttgtttgttacaaatgtgctgggtttttttttgctctacAAGACTTAAATAATGGACTGGGTCATGCCGATCACctatggattattgtgatgttattatcagctgttttgacgCTCattatgacggcacccattcactgcagagaggATCCAGAGCTAGTGATTTAATTGttacatttcttcaaatctgtttgAATGAAGAAATACATTCATCTCCATCTCAAAGATGCAAagtgcattttcagcaaattcttGGGTGAATTAAtccttttaaaatactgtaatccCGTTACGGGGGCCAGTTTTGTATGCTTATATAGTTACATGCTGCAATTAAAAaattggattttgttttttttggccagCTATGCATTGCTAGTTGTTGcacaattgcaaaaaaagtgcTGTGAAAATTGTTCACGAAAGCATACAACTGTTTATAACGACAACAGACAATTCATACTAAAACAAAGTGTTTACTTCATGGAAGGATAGTAATTGGAACATTCTGTGCTCACTTGCAAAACCAAACTATGTCCTTAAAAGGGTATCCATCCCTCTGACATCACCATACGCACGTCTCTTTGGATCCCAGATTATACGTGGAATCCTTTTAAGTCAGTATCCTCTGAGAACAGGAAATACAATGATGACCAGTATTAAACTAATGTGAAGTGCCGTGAGCTTTATTAAACGCTTTTTACATGGCAAAAACAAAGTACATCCGTTTTGAAGTGCAAACCTGAAAGCCAGGGTCATGCGGGACAAATTTGGATCTCTGAAACATTCCTATGAATGAAACCATAATTTCTTCTCATCCCGTAGTGTTTGTAAGGCAGCTACGCAGGGCTTATTAATGGCCGTGGTTCGGGAAGACCACTGAAATCCTGCCAGTGTTGGATGGCGTTCTGTGTCCGAggtcattcattaattcatagCCGTTTCTGGCAGttttatagatataaataagGAGTGTATCCGTTGAGAGGCTGACATGCAGTGGCTGACCCTTCAGTGAAGAAGTAATTAGGGTCAAATATAAAACGAAACTTACAAAGAAAAtcaatctgattttttttttatagtaaaatatatcaCTCAGTAAACAGCATGAAGTGACAACAAAGAATTTAAGGTTTCAAAATAGTCCAGGAAAGATGGAAATTCCACTCTGTAATTTTCGTGTCGGAGTGATGGATTCTGAACTTTTCAATCCACATGGTAAGTGTTGTccgcaacatttttttttttccatttcaaaagcATCTATGGAATctcatatacaaataattatctTCCTGACAGCAGGGTCCTTCAAAACGAAGTTTACAGTTTTCATTATGAAGTATATTATTGTAGCTCTGTCCCGTGtaactgtttaaaatatatccCAAACCACAGCTGAGAAAACCAGAGCAGGAAATAACAGCGTGAACTTCATGATATATAAAACCTGAATGAAGACTGTTGTCGCATTCACAGATGCATGGGTGTATACAACATTATTACAAACAGCTGGTCTACATTAGCAATTGTATATAATTGCTGAGAGAGGGCTGTACGGGATAACGAAGTAAGGACGCTTAAATCTGCTGCTGCTAAAATAATTTGCGCAAAGATCACATCGTGAAGATACAATATAGAATCAGCCTACGTAATAAAAAGCCGCTCAAAATAAGATTAGTTCGTACCCCATTTCATCTCCAAAATATTTATCTAAGAGCCTTTTGCAAGAATGTTTTCCAGAATTTCTGCAAGAACCtcttgtttattttacagtattgcaTAAGCTTCGAGCATTACTCTCTAATAAGGATGAAATTACTTACACCTTGAGGTTCAGTTCACCTTAGGCCGCTCTGGCAGCTGGTCATGTTACTGGCACGCCGCTGGATACTGAACAGACAAGAAACACTTTTCTGAATGCCAGACATTGCATTCTGTTTAATAGCCCGTCTCGTTTGCACTTACAGTTAATTGCACATTTCTGTACGTGTCGCAGTATTAAGAAAAGTTATGAATGGCCtataaagtttataaaaatgtaaaactgtcaaACGAGGACTGCAGAGTTTGGAAAGCACTGTGGAATGAACCGGTCCAGCGTTTTGTAACTTGTACCTTTTGTAGGCAATTATACTGTCATTTTTATGGAAAGACAAATGTTTCAGGTTCGTGTCATTATAATTTGGAAAAAATGACCATGACGCTAAAGCTATTAGTGTTAACTAAATCTTGAAGAAAATCTTTGATGACTATGAATAGTGACTTTGCTCGTATTTGAAGAGTCTTACTGCCCTCAGGTGTTCACTGGTCAGAACTACAATTGCCTTTTagattaactttttaaaaatcgtgCCATTAACTGGCActttactgaaatattaagtATTACCATCAGATTAAAAACcgaataaacaatatacagcaCAACGGCAATATGCAAATTGCCCACATTTAAGGAACTTctgcctcaaaaaaaaaaaacagggacaCATTAATTTCTGTTTATGGAAACATAACTGAACATGAGGTTGGACAGCAGGACCCTTTGTCAGGACACCGTCAAGAGCTCAGTTCATTGACACCCGTGAAGGTCAATAAATATCAAAAGGCAATTAGAAATAGAAAATCTACAGCtttctattaaatatacagGAACTGTTGGGACGACAGTGTCTAGCCTATGGCTCAGTGGTGTTTTGATCGTGACCTACCAGCTAGAGGCGCTGTAGATGATTCTGAAGGGCTTTTTTGTTCTGGTCAGTTTggggttttcttttcttttttttcttttttttgtttctaaattGCTGTGCAACTTTTATCAAAGTGCTTATAAATCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233804 lncRNA downstream 13895 14242581 ~ 14243955 (-) True G157885
TU233794 lncRNA downstream 20836 14236352 ~ 14237014 (-) True G157880
TU233765 lncRNA downstream 32456 14222809 ~ 14225394 (-) False zbtb48
TU233789 lncRNA downstream 113920 14143662 ~ 14143930 (-) True G157875
TU233788 lncRNA downstream 115682 14141939 ~ 14142168 (-) True G157874
TU233829 lncRNA upstream 30412 14302872 ~ 14343270 (-) True G157901
TU233833 lncRNA upstream 52256 14324716 ~ 14325647 (-) True G157905
TU233839 lncRNA upstream 53924 14326384 ~ 14391551 (-) False G157906
TU233840 lncRNA upstream 53924 14326384 ~ 14407573 (-) False G157906
TU233841 lncRNA upstream 53924 14326384 ~ 14414000 (-) False G157906
XM_043225463.1 mRNA downstream 24799 14224588 ~ 14233051 (-) True zbtb48
XM_043225302.1 mRNA downstream 61163 14150523 ~ 14196687 (-) True syt6a
XM_043224788.1 mRNA downstream 153624 14100397 ~ 14104226 (-) True sdf4
XM_043224794.1 mRNA downstream 163414 14085586 ~ 14094436 (-) True ctdsp2
XM_043224173.1 mRNA downstream 217772 14031726 ~ 14040078 (-) True tmem240a
XM_043224951.1 mRNA upstream 14501 14286961 ~ 14293566 (-) True idh3g
XM_043224624.1 mRNA upstream 156512 14428972 ~ 14524636 (-) False lrp1ab
XM_043224623.1 mRNA upstream 156512 14428972 ~ 14524636 (-) True lrp1ab
XM_043225371.1 mRNA upstream 282354 14554814 ~ 14563800 (-) True senp1
XM_043224161.1 mRNA upstream 292004 14564464 ~ 14569658 (-) True LOC122328465
TU233040 other downstream 975523 13280256 ~ 13282327 (-) True G157373
TU233029 other downstream 1040442 13141078 ~ 13217408 (-) True G157367
TU232479 other downstream 2333200 11922844 ~ 11924650 (-) True G156985
XR_006247884.1 other downstream 2456218 11799922 ~ 11801632 (-) False si:dkey-93l1.9
XR_006247899.1 other downstream 2512455 11745262 ~ 11745395 (-) True LOC122329329
TU233846 other upstream 54506 14326966 ~ 14330784 (-) True G157909
TU233895 other upstream 308634 14581094 ~ 14589593 (-) True fitm2
XR_006247853.1 other upstream 1074957 15347417 ~ 15474377 (-) False magi3a
TU234273 other upstream 1426809 15699269 ~ 15717250 (-) False LOC122329227
TU234274 other upstream 1426809 15699269 ~ 15717250 (-) False LOC122329227

Expression Profile