RNA id: XM_043225085.1


Basic Information

Item Value
RNA id XM_043225085.1
length 5540
RNA type mRNA
GC content 0.38
exon number 6
gene id rgs19
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 7310570 ~ 7342699 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGTGTCGATTCTCAAGCTGGAACATTGGAGGAAAAAAGATACTGTATTTTACCCACAAAACAGCCCAAAAACAAACGGATGTGCATCAGAAAACGAAACGGCTACCGCCCTCCAGATCATTTTAATGCCAAGATTgAGAGGTCCGCGGCCTGCGGGGGGATGACATGCATGTGTCCAGGCATTTAACATCATTGAGGATTTTAAGACTAGTAGGCTGCCCTCCGCCAAGCCATGATGGACATTCTGTACACAGGCCCTGTCCCGGCAGACCGCGAGTCTCCGATGACGCGGAGCGAGACGTCCCCCAGCCGTGCCCAGCATCCCTCCCCTACACAGAAACCCAACACCTGCTGCTTCTGCTGGTGCTGCTGCTGTAGCTGCTCATGTCTCACTGTTAGGAGTGAAGATGACAAGCGCGGGCGGAGGAAAGCCCAGGAGACAAAGCTGGAGTCCTTTCCATGTGAACCTTGccccAAACCGACAATAGAGGAGATTAAACAGTGGGCGCAGTCTTTCGATAAGCTGATGAAGAACCCAGCAGGGCGAAACAAGTTCCGTGAGTTCCTGAGGACTGAGTACAGCGAGGAGAacatgctcttctggctggccTGCGAGGACCTGAAGAAGGAGATCAACAAGAGTGCCATCGAGGAGAAGGCGCGTTTGATCTACGAAGACTACATCTCCATACTCTCACCCAAAGAGGTGAGTCTGGACTCTCGGGTGAGGGAAGTGATCAACAGGAGGATGCAAGAACCCACCCCTCACATATTTGAGGATGCACAGCTGCAGATCTACACCCTCATGCACAGAGACTCCTACCCACGATTCCTCAACTCCTCTGTCTACAGATCACTGGTGCAGGGGGGGTCACGTTCTTCGTCTGAGTCATAGACCCCCACCTCCGCCCTCTTTTTTCACTCACTCTCGCCACCCGATTTCTCTCCAtttccctccatctctctccaTTGCACAACCACTCAAGGAGAAAGTACTCCTTTTTTTGTGTCGTCATGGTTGgattaccatttttttttgccttactCCATTTTCCTCTGTCATTTTTGAGGGAATCCCtcattttttttagtgtttctcCTGAACCTGCACAGACTGAAACTGGAAGACACAGggttgaaaatgcagttttcatttttcgaatcctctttttttcccatcaTTCCAAGCGTATGTGGCAGCAGCAGTATCAACTACTGATTTTCACAgccatctttctctttttttcacgCAAACACGCTTTGCTACTTTAATCTCCTGACGTCTCTAGCCGAAGACAGCTGAGAGGGCCTCTGCAATAACATACACTGGAGTGGCCTGACCAATCTGCTCCTCTCTCCTGACCCTTGACCTGTCCACTGTctctgtgctctgattggctctttGAGGCGAGGGGTCGAGAGCCGATTAGCTGCATCGTAAATGAAAATGGCACTTTCTCAAAGTGCTAAACAAATAGGCAAAAAACtctattttcaataaaaaatcaATTTCCAGGCCCACATAGAATTTTCCAGATTTTCTGCACTGATTTTGAGGGAAAATCTGTGGAATGGATTTACATACGGTAGAATGAGAGTACTAAACTAATACTGGTAGCTGAAAGCAGTATCAAATTAGCCAAAATATTTACTAGACATGAAGGCAGGGGGACGTAGAATTTCGTTAAAGAGGTCATAACTATTTTGTTTGAGATTTCTGTGTGTACAGATTTCGTGTGGGCCTGTTGATTTCAAGTAACAGTTATCAGTAAAAAAAGAGAGGAGGATTGCCAATTTTAGAgatattaaatgaatcaaacatgaaaacatgaaacatgaaatgaGAGAATGCCATGGTCTTAATTAGACTGGTCactcacattttaaaatgtgtattttaatgttatttattttttattttgttaaactgTGACcggatttgtttttcttgtacatatattaaagaaaatctgGAACATATGCGACATACCGAGCAAGCTGTTAGTCCTGAGTGCTCAATTGCGCTGTATCTCTCTCTGgcctcactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtttctgaGTTTATCTCTCTGGCACCTCCTATAGGCAGTTTCAGGTACTGCAGTTTTgcaaagctgtttctcagtgttCTCGCCTTTTATTTAGGCAAAAGCAGATTAGTCATCATGAAATTGAAATTAACTTTATCGGTCAGTGCGCGTTATACACATATTCTGtctttgcaaatgtaaaaactCGCTCTGcctctaaaaataataatcgcAGTTATTCAATCCTGGTTTATGTTGTTGTAATAAATGTTACAGCAATAATAGCAGATAATGATACATTTGAATTTAAGTACGTCACGtcatatcagtgtttttttctgtcggTTTTTCACACAACATACATGTTTCAAGGAGAATATCACAGCATTAACAAATAAGAAAACCATTGCACAGGTTTTATAGTATTGTacatgaaacttaaaaaaaactaaaaactaatccagtacatttcatttattcgtGTTTAATGCTCAGTGTTACACCTCCGCTTAAACTCATTTTCTTTACAGATGTCGcttgatatttaaaacataataggAGTATTGGAGAACCAGTTGGACTGATGTGAACACTGTGAGCTGTGCTACCGCTTGAAACCTATGTATCACAAAACCTTTCATAATGTGAATCTGAAAAGAACTAGTACTGTGCGAGCGGGTCCACAATAATCGAGAAATTCTGTTATAGTCGTTTTATATGACtgctgatgtaaaaaaaataaatatatatatatatatatatatatatatatatatagttttttttttcggttcattttagatcatttcacattgaaatgaattaaaacatccACATCCGCTTTGTACTTCCTGGCACTTTCAGGAATCGGTTCTTATATACGTacagcaaataaatgtataatgaatTAAGGACTCTAAAAGTCAGATTTTGAGAGTCACGTCAATTTAGAGGAACTTCATGTACTgtagtactaaaaaaaaaaaaaaaaaaaaaaaacaactgatgcctttattttgctttttcccCTTGTGCATGAAGATGTACATTTTGGAACATGTGTGTAAAATAGTTGTGTATATGgttatatatgtacatgaaCATATATTTAGTATTGCTCTTATTGTCTGAAATGATGTGACCAGTCTAACTTAAGCCAGATgtatgcgtgtctgtgtgtgcgtgcgagtgtGTGATAGAAGTTAAGTGAACTTTCTCAAAACAATGGGAGAGAGATGTCAATGTCATTGCGGCCTTTGACAGTGAACACTCGATTACACAGGGATACGCACAGTTACACACCGTCCCGCTCTTTAAAGACACACTTAAAAGAGGGAAGCTTGCTGGTGGACCTCTCACCATTTCACATGCACTTTGCGTTCACACTGAAAGCGAATAAGAGGacactgtactgtactgtactgtactgtatcaGCTGATCACATGAGCTCCCCTGTCTTCGTTGAACTCCACTCAGATGCCGCTCACGTCGCCTCAAATCGTCAGTTTACTTTGAAAGTGACTTCAGTTCGCTTTTTATAAATCGCCGTCAGTGTGAACACTCTGCGATCAAAGCAATGCAACAGatttaaacaatcaaataaaagttttaaataatcaatCTCACTGCTGAAAAATGAGAATTtgaactattaaatattaacattaaaatttgatcttttttttctagtttatttttaaaaaataacatttaaatgcacaataataataattattattgttttttaataaatatgtattgttaataaatatgtatgccTCCAGTCTGGGATGCACTGATATTAAATTCTGGCCCAAAACTAATAAGCTGATAAATCTCATTTGCCCAATTCTACAATTTTctgtacaaatatatttaatttaaattaaaacactaaataataaaagcggtaattgaaatgctttaaattttaGTGTTTTCAAAATggatattcattcattatgtgctataaagatgacattttattgtttctttgCAAATCATTATAGATTATTAGTATTTCTAAAGATCAAATTCAAGTGGGTTTTAGGTAATGGCAAAGAAAGTCTACACAGAAATGTTAAGGCTGAATTTAAgacttatttatttgaattgcattttcAATATCCATAGATTTGGACATATATGTAACTAAATCTTAATGCGATGCATATTGAATAATCCTACATAATACAgataaaagatagatagatatatattcatgccattgtttattattaaatattggtTATACTTCTGTTTGTAAtctatttacaaaataatttattaaaactgttcaaatctgtttattgttaaataataataaaaaaaaaactttagttgAACAAGCAACATTCagttaaaattctaaaataaattggATTTACTGATGGTAGACGTATAAccttttacagaaatattttattatatattacaaataatatatatgtatatatatattacctgtTTCATTTACGCGTGATAAACAAATATGCATCACATTAAGTTTGTTAGTTTAGTTACAAATTGTGTGAtccaaatgaatgaaaacgATACATGCAATTCAGATTCTTTTGTTccaaaataagcagcacaatGAAATATGTATTCTCTAATATTGACATCACAACCCGCGCTTGCAGTGCAGCCggcttaataatatttaataataggaGTGCTCTACTTTGTTGCATCGCTCGCCAAACAATCGTCCTCATCCTCTTTCAACAGCCGCACAGAACAGACAGACTTTGATCGGAGACGGGGACTGTGACCTAGAGCTGCTTATGTTTACATAGATTTCTTTAAGGTGCCAAAATGAACCTAGCCTTCTAACAGTCTCAAACTAAGGAGCTTTGTGAGTCTGTCGATGCCCGATGTGTTTTCGCTGTGTTTTGGTTTCGGCGCGTCGAGGGCTCACTTGGCACGCTTCAGCCACCTCGCCCGCCTTCCCTCACTCTTTCTTGCGTTCTCCCCGGTCGCTCTGtgagatttttctctttttgtcgtGAACCCTCACGAGATTTTCAGCGCCATGACATGCAGCAGTGAGACCCGGTCCCTGACTCACGGACTTCTGTGGACACTTATTTATTGACATTagcattatattttgtattaaaataaatcaagttaCGTTTTAAAGAGTATGTTTATGGATTTCTGGAccaatttgtttagtttgtttccTGAAGTCTGTGACcattactcaccctcgggcGCCGTAGCAGGACGCCCTCTTCAGGTTGCGGTTGGGACTTGAGGTCCCTTTTTAACCCAGGCCAGCTCATTGCCGGAGATGATTTCATCAAGAACTCGTCTGTAATATTCCATAACCTTTGACTTGGTTGCagatttttttgaatgttttttaaagagaagATATGACTATAAATGatgacgataataataataataaagatgtttgtgttattattca

Function

GO:

id name namespace
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230416 lncRNA downstream 5006 7124828 ~ 7305564 (-) True G155607
TU230413 lncRNA downstream 9434 7120403 ~ 7301136 (-) True G155605
TU230414 lncRNA downstream 185984 7122929 ~ 7124586 (-) True G155606
TU230405 lncRNA downstream 204416 7100308 ~ 7106154 (-) True G155597
TU230389 lncRNA downstream 242746 7063578 ~ 7067824 (-) False G155586
TU230442 lncRNA upstream 58423 7400981 ~ 7401192 (-) True G155620
TU230445 lncRNA upstream 116973 7459531 ~ 7459780 (-) True G155623
TU230446 lncRNA upstream 118371 7460929 ~ 7461302 (-) True G155624
TU230449 lncRNA upstream 136937 7479495 ~ 7480570 (-) True G155627
TU230450 lncRNA upstream 139469 7482027 ~ 7482492 (-) True G155628
XM_043225559.1 mRNA downstream 219326 7088177 ~ 7091244 (-) True sox18
XM_043224180.1 mRNA downstream 250319 7008897 ~ 7060251 (-) True LOC122328474
XM_043225536.1 mRNA downstream 307047 6994167 ~ 7003523 (-) True LOC122329304
XM_043224124.1 mRNA downstream 328609 6964742 ~ 6981961 (-) True LOC122328436
XM_043224119.1 mRNA downstream 384154 6871977 ~ 6926416 (-) True LOC122328429
XM_043224185.1 mRNA upstream 179506 7522064 ~ 7525501 (-) True npbwr2b
XM_043224442.1 mRNA upstream 431743 7774301 ~ 7782717 (-) True kif3b
XM_043224007.1 mRNA upstream 441747 7784305 ~ 7788287 (-) True LOC122328356
XM_043224571.1 mRNA upstream 479564 7822122 ~ 7832584 (-) True LOC122328712
XM_043225053.1 mRNA upstream 511746 7854304 ~ 7861354 (-) True LOC122328943
TU230401 other downstream 32247 7276448 ~ 7278323 (-) True G155596
TU230379 other downstream 307083 7000585 ~ 7003487 (-) False LOC122329304
TU230386 other downstream 313761 6994181 ~ 6996809 (-) False LOC122329304
TU230394 other downstream 328781 6966827 ~ 6981789 (-) False LOC122328436
TU230380 other downstream 443289 6864425 ~ 6867281 (-) False ccm2l
unassigned_transcript_2580 other upstream 843339 8185897 ~ 8185988 (-) True trnai-uau_5
unassigned_transcript_2581 other upstream 843637 8186195 ~ 8186288 (-) True trnai-uau_6
unassigned_transcript_2582 other upstream 844259 8186817 ~ 8186910 (-) True trnai-uau_7
unassigned_transcript_2583 other upstream 844559 8187117 ~ 8187210 (-) True trnai-uau_8
unassigned_transcript_2584 other upstream 846255 8188813 ~ 8188906 (-) True trnai-uau_9

Expression Profile