RNA id: XM_043225093.1


Basic Information

Item Value
RNA id XM_043225093.1
length 4849
RNA type mRNA
GC content 0.47
exon number 17
gene id epha2b
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 13932988 ~ 13955555 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCGGCGGGCGGGGTTCATCAAGCTCCGTGTTTCTCAATGAGTCTGTCGAGAGCGCGACTGGACTGAGCGTGGAGCACACAACATCACTGTCCACTCCGAACACGACATGGATTACAGACGGATTAAGCGTATTTTATTTGTCAATGTATTTAtgaactttgtatttatttctcttcAGAAAAAGGAAGAGGTGCTGCTGGATATGGTGGCTTCAGGAGCGGAGCTGGGTTGGTTGACGTCGCCTGTTGATCACGGGTGGGAGATAGGCCAGCGGGCTGTGAACGGCTCTCTGTTGTATAActattatatatgtaatgtggAGGAACGAGAACAAGACAACTGGCTTCGTACTACATTCATCCAGCGCCACCCCACCGCCTCTCGGGTCTTTGTGGAGCTGCGATTTGTGGTCCGTGATTGCAACTCTTTTAATGCAGACTCGCTAATCTGCAAGGAGACCTTTAACTTGTACGCCTCTGAGGCAGACGCCGACATTGGCACTGCTTTCCGCAAAGGTCTGTTCCGCAAAGTGGCCACCATTGCTCCAGATGAAATTTCTAGCCTTGGAGAGATGAAGATGAACGTTGAGACAAAAATGGTGGATAATCTTTCTCGCAAGGGCTTCTACTTGGCCTTCCAGGACATTGGGGCCTGCGTCGCCATCTACTCTGTCAGGGTTTACTATAAAACATGTCCAGCAACAGTGAAGAGCTTGGCAGCATTCCCTGAGACCGTGGCAGGGGGAGAGAATCAAGCCCTGCGGGAAGTGGCTGGAAGTTGCGTCTCAAACGCTGTAAGCGAGGACCAACCTCGCATCTATTGCACCACGGATGGGGAATGGGTGGTACCTGTGAGCCAATGCCAGTGCAGACCTGGGTTCGAGGCCATGAACAATGCATGCCAAGaatgTCAGTCTGGTTTCTTCAAATCTTCAGTGTCCAGCGAGGCCTGCAAACCCTGTCCAAAAAACACCCAGCCCTCAGGTCCTGGCGCCACCAGCTGCACCTGCAAGGACGGCTTTTATCAAGCACCCGAGGACCCCAAAACAGCTCCTTGCTCTGGTTTACCCTCCGCTCCTCAGAGTCTGGTGGCAACCACGGCTCAGATGTCAATAGGCAGGCTTCAATTGTCGTGGAGGCCCCCTGCAGACACCGGCGGGCGCAGTGATATCATGTACACTGTGGTTTGCGAACGCTGTGAGGGGAGGGCATGTCAGCCCTGTGGTGAGAAAGTGCGTTTCGATCCAAGCAACACTGGCCTGAAGGACACCAGAGTCACCGTGAGTGAACTGGAGCCCCATTTGAACTACACTTTCACTGTGGAGGCACGGAGTGGAGTGTCCCAGTTTGGCAATAAGAGAGCCACCAGCAGCATCAACACCGCTTTACATTATACAGATCCCCCAAAAGTGACTGCAATGCATCTTGTGGACAGCAGCTCCACCAGCCTGTCACTTCAGTGGTCTGTTTCTCACCGTTCCAAGCCAGTTGCCACGCGTTATGAACTGATGTATCGCAAAAAGGAAAATGATGAGGAGATAGCCAACGGAAAGGTCACTACCTACACTGTGCTGGTGCTGGAAAAGAACTCGGTTCAGATCAGTGATCTGTCTCCTTCCACCGTCTACTTGTTTAAAGTTCAAGCTCTCAGCCCAGAAGGAAACCCAGGCAGCCACAGCTTGGAACAGGAGTTTTCAACGCTCCCGCAAgCTCTTCAAAAGCAGGGAAACACACCAGTGATCCTCGGGGCCGCGATCGGAGGAGGCATCATGCTTTTCATCGTGGTAGTGGTCCTGCTTCTGCGAAAACGGCGAAGAAACTCTCACACCAGACAAGGGCCAGAGGACACCTATTTCTCCAGCCCAGACCAGCTGAAGCCGTTGAAGACCTACGTCGATCCTCACACGTACGAAGACCCTAACACGGCAGTGCTCAAGTTTGCCAGCGAGATCCATCCCAGTCACATCACAAAGCAGAAAGTCATCGGAGCAGGTGAGTTTGGAGAGGTGTATCGAGGAATTCTGAAAGCTCCCGGTCGGAAGGAAACAGCTGTTGCTATAAAGACGCTGAAGCCAGGatacacagagaaacagaggcAGGACTTCCTCAGCGAGGCCAGCATCATGGGACAGTTCTCACATCAGAACATCATCCGACTGGAGGGGGTGGTCACCAAATTCAAGCATGCCATGATTGTGACCGAGTACATGGAAAATGGAGCTCTTGACAAATACCTGAAGGACCACGATGGCGAGATGTCATCCTTCCAGTTGGTCGGTATGCTCCGTGGCATTGCGGCCGGGATGAAATATCTCTCAGACATGAGCTATGTACACAGGGATCTGGCTGCCAGAAACATCTTGGTCAACAGCAACCTGGAGTGCAAGGTGTCTGACTTCGGTTTGTCACGTGTTTTGGAGGACGACCCTGAAGGAACCTACACCACCAGCgGAGGTAAAATTCCTATTCGCTGGACTGCTCCGGAGGCCATAGCTTACAGGAAATTCACGTCAGCAAGTGATGTGTGGAGTTTTGGCATTGTCATGTGGGAGGTCATGGCCTTTGGAGAGAGGCCCTACTGGGACATGAGTAACCATGAGGTAATGAAGGCCATTAATGAGGCTTTCCGCCTTCCTGCTCCAATGGACTGCCCCTCTGCCGTCTATCAGCTGATGTTACAGTGCTGGCTGCAAGATCGCTCCAAACGGCCCCGCTTTGGCGACATTGTCAGCATACTAGACAAGCTCCTCAAGAGCCCTGATTCTCTGAAGGCCATTGCAGATTTTGACCCTCGAGTTTCCATAAGGCTTCCCAGCACCAGTGGCTCAGATGGCTCTCCCTTCAGGTCTGTGGCCGAGTGGCTGGAGTCCATCAAGATGAGCCAGTACAGCGAAAACTTCAATATAGCCGGAGTCGTCAGCATGGAGCAGGTGCTGCAGATGAAAAGCGAGGATATTCGTAACATTGGCGTCCGTCTGCCGGGCCATCTGAAGAGGATTGCCTACAGCATCTTGGGGCTTAAGGACCAGACGAGCACCCTGAGTGTGTTTGCAGTGTGAACTGTCTTTAAAAAAGTACCGAAGGGACCGAACCCTTTGGCCGTGGACTGAATAAACTCTCAGCTGCCTCGGGATTGGACTGCAGGGACAGCCCTTGACCTGGCCATAACCCTCCAGTCCAGCGAGATGGACTCTCACCGCTGCGGACACATTGGAGTAGCATTTGGTGTACTTATAAAAAATGGAGGAAGtgtaaaacaatcaaaaagCTATTGATGTATGCATCAAACCATgtatattagatatatttttaccatatgcatatgtttattttttagagaaaatatagtcatttctttatagttttgcttttttacattttttgttagtttcGTATGCATGCTATATATTTTCGCCGGACAGCGATCAATGCTAGTTAGCACTCACTTTACGCTCGGATCTTACGTTGCTCCTCCATTGCTGTTGGCACTGTATTGCTCTGTACTTGACTGAACGTTTCAGCAGTACGAGAGAAAACCAGACCCACAGGTCTTTCTGTACCAGAAACACGGACTCGAAGCTGGCGGTTATGGGCTTCAACCTAAGACTTAACGATGTTCTGCTGAGATCAAGGTGATTGTAATGCTCTCTGGTTTCTATCATGCTTGAGTTGGCCATGATTTGATGTCTCGCACGATGACATTTCTTTACAATTGCACTCTCAGCGCTATATGCTTTGGACCATCAAGTTTAAAGTCTCTGGTTTAGATGAAACGGAGCAGCGAGGCGTTCCTTAAATCCTGTGTTTTCTCTGCAAACAAGAAGAGAGGAGGCACCGCCATGAAATAGCACTTAAATCACAAATCTCAACAGCTGTCTCATCCCTTATCGTTATGAAAGGTTACGGCAGTGATGACATTAAGGATCGAAGGGAACAAAGAGCgagcaaaatgacaaaatggaaATGGgttgagaaggaaaaaaaaaactgttctggaacagatTGTCGGACTAAATCAAATGGGAAAATGCGATCCGGCGGTGTTCTACAAACAAAAGCACGGTTCTGATTTTCAGATATTTGCACCAAGTGACAGTCCTAGCAAACTGAGAAAATGATCAAACAGACCAGGATATGTGGATGATATACCAAGGTCTGTTATTCATTCTGTATCAGCAGATTAAAGTCGCCTGGAGCTGTGAATTGTGGAGACTATCTTTGGCAGATCTGGTTTATGATTAACTGATTTAAGATATGCTGGGATGAAATGCTACAACCTCTCTTGATTATTTCCTCTGACTTATAAGACCTCAATATGATTTCACATGTGGGGTAGATAAGCCCCTTCGTATGGAAAGTCTTACTCCATATtaaattctctctctttttttttttgtatttacagaGGAGAGAAACAGCTACGTAATGTCCTTAAATCTTAATGGATATTGCAGTTCCAGTTAAtttcacatgatttttttttttttgtagatgttGAATGCAGATGGGTTCTTCCTTTTTTTAGAAATGACatatttagtgtttgtttgcagtTGATAATGTGTTTCATATCTATTTTAAGTGGGACGTTGATACTGGCAAACTGCAGGACTTTGTTGTAAAGGGAAAATTGTCATTTCTGATCACTTATTACCTTTTTCTCGAAACACTCAGttaaaaaacatgcatactTCCAAACAAAGAACAGTTTGATTGGGCcaagtgttttgtattttatttaatagtctatttattttttactttatttattgttttaatgacaCTGAATTGGGATTTATTTGTAATGGAAGTTTGTCTTTCAGTCACAATAAAATCTTTGTAGCCTTTCA

Function

GO: NA

KEGG:

id description
K05103 EPHA2, ECK; Eph receptor A2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233703 lncRNA downstream 107399 13823993 ~ 13825589 (-) True G157826
TU233679 lncRNA downstream 159680 13772775 ~ 13773308 (-) True G157813
TU233665 lncRNA downstream 185817 13742257 ~ 13747171 (-) True G157799
TU233620 lncRNA downstream 497127 13433755 ~ 13435861 (-) True G157765
TU233023 lncRNA downstream 810962 13121813 ~ 13122026 (-) True G157365
TU233774 lncRNA upstream 102282 14057837 ~ 14075937 (-) True G157863
TU233788 lncRNA upstream 186384 14141939 ~ 14142168 (-) True G157874
TU233789 lncRNA upstream 188107 14143662 ~ 14143930 (-) True G157875
TU233765 lncRNA upstream 267254 14222809 ~ 14225394 (-) False zbtb48
TU233794 lncRNA upstream 280797 14236352 ~ 14237014 (-) True G157880
XM_043225568.1 mRNA downstream 9507 13912555 ~ 13923481 (-) False fam131c
XM_043225566.1 mRNA downstream 9538 13912555 ~ 13923450 (-) True fam131c
XM_043225567.1 mRNA downstream 9543 13912555 ~ 13923445 (-) False fam131c
XM_043225057.1 mRNA downstream 31876 13897806 ~ 13901112 (-) True hspb7
XM_043225055.1 mRNA downstream 35890 13887196 ~ 13897098 (-) True zbtb17
XM_043223975.1 mRNA upstream 12963 13968518 ~ 13999572 (-) True spen
XM_043224170.1 mRNA upstream 44330 13999885 ~ 14002685 (-) True tmem82
XM_043224168.1 mRNA upstream 46881 14002436 ~ 14007735 (-) False sult1st5
XM_043224167.1 mRNA upstream 46881 14002436 ~ 14007735 (-) True sult1st5
XM_043224169.1 mRNA upstream 46881 14002436 ~ 14005659 (-) False sult1st5
TU233040 other downstream 650661 13280256 ~ 13282327 (-) True G157373
TU233029 other downstream 715580 13141078 ~ 13217408 (-) True G157367
TU232479 other downstream 2008338 11922844 ~ 11924650 (-) True G156985
XR_006247884.1 other downstream 2131356 11799922 ~ 11801632 (-) False si:dkey-93l1.9
XR_006247899.1 other downstream 2187593 11745262 ~ 11745395 (-) True LOC122329329
TU233846 other upstream 371411 14326966 ~ 14330784 (-) True G157909
TU233895 other upstream 625539 14581094 ~ 14589593 (-) True fitm2
XR_006247853.1 other upstream 1391862 15347417 ~ 15474377 (-) False magi3a
TU234273 other upstream 1743714 15699269 ~ 15717250 (-) False LOC122329227
TU234274 other upstream 1743714 15699269 ~ 15717250 (-) False LOC122329227

Expression Profile