RNA id: XM_043225102.1


Basic Information

Item Value
RNA id XM_043225102.1
length 5352
RNA type mRNA
GC content 0.46
exon number 30
gene id itga5
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 17214599 ~ 17258164 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGAGGGAGGACGCAGAAAGGAGAGGACAGATAGACGGAGGCGCGGTAACAGAGCGCTTGGAAAAATAAGGATCAGACCGATACGCTTCATAGAGGCATGCGCTTTGCGTAAGGCAGCATCATCAGGAGGATTCCGCTCAAGTGCCCCCTTTTGTTCTGAAAGAAGTTTAATAAAGAAGTGGATTGTGACATATCGATTACTATGGGCTCCAAAAGGCACCGTTCAAAGACTTCAGCGTCTTTACACAACCCGCGCTGCTCTCCAATGGGACTTTCACTGTTGATTCTTCTACCTTTGTCTGTTGCCTTCAACTTGGATGTGGAGAACCCAGCGGTGTATACTGGACCCAACGGTAGTTACTTCGGTTACTCGGTGGACTTTTACATGACTGACTCAAGTGTGAGTATTATAGTTGGAGCACCCAAAGCCAACACCAGCCAGCCCAACATCAGAGAAGGAGGATCAGTCTTCTACTGTCCATGGAgcctcagccaatcacaatgcagCAGCATAGAATTCGATACACAGGGAGATCTAAATATGCCCGTGAATGAAGCAGTACATCAGGGAGAGTTCAAATCCCATCAGTGGTTTGGAGCAACAGTACGAGTTCATGAAGATAGTGTGCTGGCTTGTGCCCCCCTCTACTCCTGGAGAGCCATGGAGGACAAACCTCATGCTGATACAACTGGCTCATGTTTTCTATCTGTCAAAAACTTCACTAAGTTTGTGGAATATGCGCCGTGCCGCACAGAATTTCGCGGAAGAAAAGGACAAGGCTACTGTCAAGGTGGATTCAGTGCTGATTTTACACAGGAAGGAAAGGTGGTGCTTGGAGGACCTGGCAGTTACTTCTGGCAAGGCCAAGTGATCACTGCAGTTAAACAAGAAATAGTCAAAGCCTATTACCCAGGATACTTCTTGACCTCAGTGGAAGGCCAGATTCAGaccaaacagaaaaaagagaTCACATTTGATGACACCTACATGGGTTACTCAGTGGCTGTCGGCGAGTTcagtggtgatgatgatgaagACTTTGTGACTGGAGTTCCCAGGGGAGTCAGACTGCATGGACAGGTTTCAATTCTCAATGGTTCTCTGGACATGCTGAAGACCTTCACTGGTGAGCAGATGGGTTCCTACTATGGCTATGCAGTGGCTACTACTGACATAAACAATGATGGGATGACGGACCTGCTGGTCGGCGCTCCCATGTTCATGGTTCGTGACTCTGATGGGAGGTTGGAGGAGTTGGGTCGGGTCTATGTGTACATGCAGAACGGACCTCTGGATCTCACACCTCAGCTACCTCACCTCACCGGCACGCAGACGTTCGGCCGGTTTGGCAGCTCCATTACCCCTCTCGGAGACCTCAACCAAGATGGTTACAATGATGTGGCCATAAGTTGTCCATTTGGTGGGGAAAACAAACAGGGACTGGTGCTCATCTATAATGGACATGCTGGAGGACTCAGGGAAAAGCCCTCTCAGGTGATCGCTGGTCAGTGGGCTTCTGCCACACCATCAGCTCTACCTGCCAGTTTTGGTTACTCCCTTCGTGGAGGCAAAGACCTGGATAATAATGGCTACCCAGATCTTATTGTTGGTGCATTTGGTGCAGACACTGCCGTTCTTTACAGGTCTCGTCCTATTGTGAACACCAGCGCTACCTTGACTGTCTATCCAACTATGATTAATCCAGAGGAGAAGGTTTGCACCATAAGCCGTGGAAACGAAACTCTGCAAGTGTCCTGTGTCAACTTGAGCTTCTGCCTCTCAGCCAATGGGAAGCACCTACCAAATCATCTCGAGTTTAATGTTGAAGTTCAGCTGGACCGGCTGAAACAGCAGCAGAAGGGGGCCGTACGGAGAGCTTTGTTTTTAGACACCCAGCTTCCCGCTCTGCAGAGGACTCTGACTGTGCCAAATGGAGACAGAGTCTGCAGTGACACCAAGATCTTCTTGTGGGATGAGAAGGACTTCAGGGATAAGCTGTCGCCTATATTTGTTGCTTTCAACTTCAGCCTAAACCCTCAAGCCGCGGCAGACAGATACGACCTGCGACCCATCCTCAACTACCAGACAGCAGAGCTCATCGAACAGAAAGCCCAGATTTTATTGGACTGCGGAGAGGACAACATCTGCGTCCCTGACCTGAAACTCTCTGTGCACGGGGACAGGAAGGAAGTGTACATGGGCGATGACAACTCTCTGACCCTGACTTTTAACGCGAAGAATGACGGAGGCGGAGCTTACGAAGCAGAGCTGTATGTGGTCTTGCCACCAGAGGCCGACTACAGTGGAATAGCCCGCAATAACGAGAGCCTGACCCAACTGACCTGCAGTTATGAGACGGAAAATCAGACCCGTTACCTCAGCTGTGACCTGGGCAACCCCATGAAATCAGGCACAAGCtTATGGGCTGGACTGAGATTTACAGTACCACGTCTGAAGGACACACACAAATTTGTGCAATTTGACCTGCAGATCCGTAGTAAGAATGAGAATAACTCCCAGAGTGAAGTCGTCCCCTATAAGTTGGAGGTGGTGGTCCAGTCAGATGTTATTCTGCAGGGTGTCTCCCGACCAGACAAGGTCTTCTTTCCCCCACCGAACTGGAAGTTGACCAAGAATGTTATGGTTGAACAGGATGTCGGACCCTCCGTCCAGCACACTTACGAGCTGGTGAACAACGGGCCGAGCCGCATCAGTCACACTTTACTGGAGCTCAAATGCCCCATGAGGCTTCAAAGTAACAAGTTAATTTACCCGCTGGAGGTTACGACGGAGGGCCCCGTTAACTGCACCACCCACAACATAGTCAACCCCTTGAACCTCAAGcTCCAGCAGTCTTCTACCGATCAGCCTCCTTTAAGAGACGCGGCCCACGAACACCACATTGAGAAGAGGGAAACGCACAAGGGCGAGCTGTCTCAGCTGACCAATCTGTCTTGCTCAAGTGTGGAGTGCTGGACACTAACGTGTAATGTTGGCCTGCTGGAGCGGGGGACTAGTGCCATACTGCATGTTCGCTCACGAATCTGGGCAGAAACGTTCATGGAGAATCCATATAAAAACTTCATTCTGGAGTGCCTTGCTAGTTACAAAGTGGAAAAGATGCCATATGCCATTCTGCCCAAAGTGACTCCTAGTGGTGCTAAGAAGATGGTCACTCCTGTGGTCTGGAATAAGCCAGACAGTACGTACGCTGTTCCTCTGTGGATCATCATCCTGGCTATTTTGGCTGGTCTTCTACTGCTCGCACTGCTGATCTACGTCCTCTACAAGCTTGGCTTCTTCAAGAGAACTCCATACGGCACGGCCATGGAAAAAGCCCAGCTCAAACCTCAGGCTGCATCCGAGGCCTAAACTACACAAGAGAGCATTTAGAAAACACGTCCCGGAGAATGTTCTTGACCAGAGGCCATCCAAAGAGAGCTTacttgctgttaaaaaaaaaaaaatgacaaagactAGACTGCAGTAAAGGAATACGGAGGAAAGATCACTGGATCTTCACTGTACTGCACTAGATCATGAGACCCTGAGGACTTAAAGCCAAATGAATGTTgacatttactattttatattattgtttttccttGATGTGGGTTTTTAGCCACCACTTATAGCCTACCACTCACAAACAGATCTTAACCAAAACTCAGGATCACTTGCCTCGCCTGGCAACCTGCTAAAGgagaaaatgagacaaaatcTATGGACACAATCTGCACTAATAATGAgagtaacatttattatatttagttttttggtcTTAGTCTGCAACTGTTCAAAGATTTCAGATGGTTAATCAGCATCTGCCGTGTAGCATTTCAATTTTtatgttaaacacacacacacgtttgcaccaaaaaaaaacttctatgCAGTATTTCACAACCAACCAGAGATATTAAGACAGGTTTTGctcatttattgttttgaaagagAGAACGAGGTAGTTTGATACCTCACCATGGACCCTCATCTCCAGTTTCctgctgtctttttttcttttttttttccattttgtgatTTTCATTAGAATGGGTTTTCACTTCGAAATGAGATGTTTTCAGCTCAGTCTCCTCTGTATCTTCTGAAGAAAGCAAGCCAGGTTGGTTTCGCTCTCAGGTGATGCCGCGGAAAGCGTAGAGTGACTCATTTCCGCGGAAAACATTGTCAGGATCCTTCGTGGAAGGCGGCCGTTCTTCCCTGCTGAATGTCGGCCGTTTCGGTCTTGTTATCGTAGCAGTAACAAGCGACAACGTTGCCTTAAAAAGTCATCTGGGACTCAACTGGATCCGCACCGAGCCTGTGAAACCTCACCGATGCCTTGAAGCAGAGCTGTGCTTTGCCTTACGCTAACAGACTCTTGGGCCAAATAGCGGAAGGGTTGTCCCTCCAAACTTCTGAGGGGGAACGGAGAATATCTGTGCACTTGGAAGGAGATTTGAAAGCAAACCTCTTCCAAGGCAGCAGGCCTCATCCAGGGACTGAATGTCGAAAAACATCTGTATactttttgttgtctttttttttttttttttttttttgtatgtgtgtttttgtgatcaCCTGCTTGTGTGCATTTGgatgtgagattttttttggggggagggGTTTATGGAGAGCCACAGTCAGTGTAGAAATGCCTCCGTACATCATGGTGCTGAAGTGGCTGAAAAGGACAGGAAGTAACTACAATCACCCATCTTGAAACTCCTGTTTCAGTAAGCCACCTAGAAAGGGAAAGCAGCTGGAACTGTGGGATTTGTAGGAAATCTGTATGGAAGtgcaatattattgtatttttttttttcaagttgttttgtcatgtgcattttattttagtgaagtTCTCAGAAATAAGGAGTATTTGAAGACAACACCCAGTTTGAGGGTTGAAATTAGCCCAGATGTTCAGATAATTTAAAAGACAGCGTAATGCTGTAGtctaaaaaatacagaaactgACAAAAAGGACCAGATTTTTAATGACAGACTCCACTTGAATcctttgtaatgttttgaatCTCTTTTGTACattatcaaaaattatttattcctccaaaatttagattttagtttcgagatttttgtattttgagcgGGAGGAAACACTGGGtatgtcttcatttattttattttattttttaactgcCCCGAATCCCcggttgtgttttttttgttttaagttgtAAATATGTTTGGTGAggagattattttaattttcagctgATACTGATTTCATCGCCCCATATTGGGGAGAATCAGAGGGATGTTCaagtaattatttgtatttagtttgcattttaaaataaatctttcagttttttttacaa

Function

GO:

id name namespace
GO:0001756 somitogenesis biological_process
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0001501 skeletal system development biological_process
GO:0085029 extracellular matrix assembly biological_process
GO:0007155 cell adhesion biological_process
GO:0008305 integrin complex cellular_component
GO:0046982 protein heterodimerization activity molecular_function
GO:0001968 fibronectin binding molecular_function

KEGG:

id description
K06484 ITGA5, CD49e; integrin alpha 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234861 lncRNA downstream 131915 17082207 ~ 17082684 (-) True G158587
TU234860 lncRNA downstream 132047 17082207 ~ 17082552 (-) False G158587
TU234706 lncRNA downstream 486256 16728101 ~ 16728343 (-) True G158484
TU234705 lncRNA downstream 486884 16727438 ~ 16727715 (-) True G158483
TU234703 lncRNA downstream 490196 16723931 ~ 16724403 (-) True G158481
TU234890 lncRNA upstream 31807 17289971 ~ 17291543 (-) True G158605
TU234898 lncRNA upstream 53164 17311328 ~ 17338919 (-) False G158608
TU234897 lncRNA upstream 75680 17333844 ~ 17335245 (-) True G158608
TU234920 lncRNA upstream 125178 17383342 ~ 17386554 (-) True G158628
TU234925 lncRNA upstream 135857 17394021 ~ 17395422 (-) True G158632
XM_043225101.1 mRNA downstream 30214 17176625 ~ 17184385 (-) False slc48a1a
XM_043225100.1 mRNA downstream 34767 17176625 ~ 17179832 (-) True slc48a1a
XM_043225098.1 mRNA downstream 38110 17171113 ~ 17176489 (-) True hrct1
XM_043225099.1 mRNA downstream 39020 17171113 ~ 17175579 (-) False hrct1
XM_043225103.1 mRNA downstream 207313 16832085 ~ 17007286 (-) True plxna2
XM_043223974.1 mRNA upstream 36014 17294178 ~ 17302565 (-) True csrnp2
XM_043225140.1 mRNA upstream 45047 17303211 ~ 17315390 (-) False tfcp2
XM_043225139.1 mRNA upstream 45047 17303211 ~ 17315390 (-) True tfcp2
XM_043225290.1 mRNA upstream 58464 17316628 ~ 17330887 (-) False pou6f1
XM_043225289.1 mRNA upstream 58464 17316628 ~ 17330887 (-) True pou6f1
TU234864 other downstream 34820 17176652 ~ 17179779 (-) False slc48a1a
TU234495 other downstream 855894 16357652 ~ 16358705 (-) False G158336
TU234490 other downstream 971204 16240810 ~ 16243395 (-) True tac3a
TU234433 other downstream 1044765 16143833 ~ 16169834 (-) True G158288
TU234366 other downstream 1205684 16008106 ~ 16008915 (-) True G158231
TU234899 other upstream 81103 17339267 ~ 17343385 (-) True G158609
TU235255 other upstream 787774 18045938 ~ 18047878 (-) False march9
XR_006247822.1 other upstream 973479 18231643 ~ 18235536 (-) False hnrnpa1b
TU235534 other upstream 1489227 18747391 ~ 18754712 (-) True G159076

Expression Profile