RNA id: XM_043225115.1


Basic Information

Item Value
RNA id XM_043225115.1
length 2617
RNA type mRNA
GC content 0.52
exon number 13
gene id eif4ba
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 6422212 ~ 6434975 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCACGCCCCCATCCGGGGATATGACACGCACTCCTTCTCCAGCATGGCGGCTTCAGgtaaaaagaataagaaaaaggGTAAGACCCTTACCCTGACCGATTTTTTAGCAGAGGACAGCGGGGGAAATGCTCCACCGAGTTATGCGCCCGCAAAGCCCACGAGCTGGGCCGACGAGACCGATGACCTGGAAGGAGATGTTACTACAGCCTGGCACACAGAAGATGACATGTATCGTGCGCCGCCCATCGATCGGTCCATTCTGCCGACGGCTCCCCGAGCCGCCCGTGAGCCCAACATCGACCGGTCCCGTCTGCCCCGCAGCCCCCCCTACACCGCCTTCCTGGGCAACCTCCCCTACGACGTCACCGAGGACTCCATCAAAAACTTCTTCCGTGGACTCAGTATCAGTGCGGTCCGCCTCCCAAGAGAGCCTAGTAACCCAGAGCGGCTGAAAGGCTTCGGCTACGCAGAGTTTGATGACGTGGATTCTCTGTTACGTGCGCTCAGCCTCAATGAAGAGAACCTTGGAAACCGTAGGATCCGTGTAGACATCGCTGACCAGTCCAATGAGAAAGAGAGAGATGACCGCTCTGTGTCCGGTCGGGATCGCAACCGTAGTGAGCGAGACCTGGGCCCAGACAAGACCGATTCTGACTGGCGGGCAAGGCCTAAATCTGACTCTGATGACGGCCCACGCAGGGACGACGCCTTTGGAGAGCGATCCCGAGATCGTTATGAATCAGACCGTTTCCGGGATGGCCAGAGGTGGGACAATGACCGCTATGATGGAGGAAGAGACAGGTACCGGGAACGTTACGATGACAGAGAGCGCAGAGACTATGACAGAGGTTATGATTCTCGCAGTGGGGGTCGTCGACCATTTGGAAGCGGCTTTCGGCGCGACTATGATGACCGGCGGGACGACGGCCGAGGCAGCGGGGAGCGCTATGGAGAGCGCTATGGTGATCGTGAAGAGAGATTCGAGAGACGGGATGAGAGGCGTGAGGACAGAGGTCCCCCTCAGAGGCCCAAACTGAACCTGAAGCCCCGCAGTGTTCCCAAAGAGGAAGACCAGAGCAGCGGCCCCTCAGCGTCCTCGGGAAGAGCTGCCTCCATCTTCGGAGGAGCCAAACCCGTGGACACGGCGGctaaagagagagaggtggagGAGAGGCtaaagaaagagcaggagaaactGCAGAGGCAGCTGGAGGAGGACAAGAGCAGAGGACCTGAACGCAAACCCAGAGAGAGGCATCCCAGCTGGCGCAGTGAGGACCAAGCAACCGAGCGCTCACGAACAGGAAGTGAGTCTTCACAGACAGGAAACACATCGAGCAGGGCGCCGAGGCGTCGGGAGAGTGAGCGCTCTGTAGAGAACGAGGTTTTCAGCAGCCGTGATGAGGATTCATCCTCGCATGGAAACCAGACTACTACTTCCAAACAGGAGGGGCTGCCGCTGAAAGTCGTCCCAGCACCGCCTCCTAAGGAGAACGCCTGGGCCAAGAGGAGCGCCATGAGTGCAGGATCCAGCGAGAGTGATAGTAAACCTGCCGTCTCCCCCAGCAGCAGCGCTCCACCCAAAAGtgcAGCAAGCTCAGCTGATGCTCCTCAGAGAAGTAAAGAAATTCAGCTCAGCCAGTAAATACGCGGCCTTGCTGATGGACGGGGAGCAGGGAGATGAAGAGGAGGGCGGAGATTAGGAGGTGGACGGGCTCCGCGGACGACGGTCTAAGTTGAATTACAAATTAAACCTACAGCTTTTGTTTCATGCAGCACTGAAGGACCCAGATGAGCCCTTTGAGAGCAAAAACCCATTTCTAGAGCAACCCCTTCCTCATCAGGACTGAACCGAATACCTAGTGGAGTAACACAGGACtcgtttaaagtaaaaaaaaaaaaaaaagtgtgtgtggaaGGATGAATGCTTATGACTAAtaaattttttgggggggaggTGTTACAATACCCATGAAAGGGATCATGCTCTTGCATACATCATAAGTTGAGTGCATTTCTCGTTAGCTTGATTGCACGATGAGTGGCAGGAAAGTGTAGAATCAGGGGAAAAGTGCCACAAGATGAATGTTTTCCCTGAACTTTAGGGCTTCCTGAGCTTTCTGAAAGAACGATTACAGCAGTTGCTTTACCGAGACCTCTGGTCAAGTAAAGGTGTCCGTGACCTGCATTGTTCACCCATTGGTTATAAATCTCACAACCTTGGTTTTATGTCTTAAACTGGCATTGGCCGACAGGTCTGATGATTTGTATTCAGGGATAACAGCCGCTGAGTTACGGCCAGCAAGGGATCAGAGCCTGTTAGTTTCGGTTTGATATTTCTCTGCACTGCTTTAAGCAGGAGTCTCCCATTTTTCTCACTTATCCTTTTGAGGACTTTTTTAAGCCACTTCTTTGGACTGATGTGCAATAGGAATTGACGTATTCCTCTGAATCTCAATGTTTCTACAAAAGAGACTGCTGCAGCTTTGGGTTGAGCCTATATCTTAAAGGTAGTGACATGAATTGCTTATTGATTTAAACTGTGtaccatctaaaaaaaaaacaataaaagactaCATTGAGTCAGTTATGCTTTGGAGGACGTTGTGAATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230114 lncRNA downstream 70387 6349007 ~ 6351825 (-) True G155388
TU230003 lncRNA downstream 230892 6191097 ~ 6191320 (-) True G155308
TU229923 lncRNA downstream 503049 5815311 ~ 5919163 (-) True G155254
XR_006247895.1 lncRNA downstream 759256 5654018 ~ 5662956 (-) True LOC122329299
TU229905 lncRNA downstream 874504 5525041 ~ 5547708 (-) True G155238
TU230159 lncRNA upstream 49679 6484654 ~ 6484915 (-) True G155413
TU230119 lncRNA upstream 50464 6485439 ~ 6488844 (-) True G155391
TU230121 lncRNA upstream 53649 6488624 ~ 6499749 (-) False G155391
TU230127 lncRNA upstream 74740 6509715 ~ 6514093 (-) True G155392
TU230195 lncRNA upstream 177018 6611993 ~ 6612524 (-) True G155435
XM_043224351.1 mRNA downstream 7777 6370216 ~ 6414435 (-) False tns2a
XM_043224350.1 mRNA downstream 7778 6370216 ~ 6414434 (-) False tns2a
XM_043224349.1 mRNA downstream 7778 6370216 ~ 6414434 (-) True tns2a
XM_043225147.1 mRNA downstream 100101 6315902 ~ 6322111 (-) True ppp4r2a
XM_043225232.1 mRNA downstream 252595 6136561 ~ 6169617 (-) False chl1a
XM_043224782.1 mRNA upstream 15984 6450959 ~ 6453339 (-) True krt18a.2
XM_043224781.1 mRNA upstream 19178 6454153 ~ 6457919 (-) True krt18a.1
XM_043225070.1 mRNA upstream 80836 6515811 ~ 6521844 (-) True zgc:171775
XM_043224003.1 mRNA upstream 163743 6598718 ~ 6602083 (-) True slc16a7
XM_043224004.1 mRNA upstream 163743 6598718 ~ 6602072 (-) False slc16a7
TU229892 other downstream 942393 5477914 ~ 5479819 (-) False LOC122329286
TU229887 other downstream 967165 5454417 ~ 5455047 (-) True G155227
TU229703 other downstream 1587692 4831818 ~ 4834520 (-) False LOC122329181
XR_006247892.1 other downstream 2227214 4173914 ~ 4194998 (-) True LOC122329268
TU230261 other upstream 295876 6730851 ~ 6731886 (-) True G155489
TU230276 other upstream 331633 6766608 ~ 6822978 (-) False rps21
TU230273 other upstream 338603 6773578 ~ 6822978 (-) False rps21
TU230275 other upstream 338603 6773578 ~ 6822978 (-) False rps21
TU230277 other upstream 338603 6773578 ~ 6822978 (-) False rps21

Expression Profile