RNA id: XM_043225118.1


Basic Information

Item Value
RNA id XM_043225118.1
length 2476
RNA type mRNA
GC content 0.46
exon number 8
gene id nucks1b
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11148868 ~ 11154450 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAACGAGTGGGTAGTAAAGGACTGTTGCCGAGTGCGGTCATCCAATCCTGGTTTGCGGGCATCTTGCGTTCTTCAGACTCCCATCCCACTTTTACTCATAAAAGAATCCTGGCAGGCAGGCCAGGCAGTAGCTAATTAGTTAGCTACTATTCGACAGCAGGCTTAACCAGGTCAATCCGGCCTGTGGATACTTCAACATTTCCTAGCCGCACAGACCAACGTGGTGTGCGAACACACGCGCTAGATCGCACGCGATTTGCGCGTCTTTAGTGCAGTTCGCCTCGCATTCGGAGAGTTTTCGCGCAGCTCCGCGCTACAGAAAGCGCTTTCCCGGCAGCGGGGGGGACACCTGGGCTTCAGCCGCAGCAGCCGAGCGCCTTTCGCACACACTCGCGGTTTGGGATCGCACGAGTCTCTCAGTCTGCGTGCAGGATGGCGAGACCTTCGAGGAATAAAAGGGTTGTTGACTATGCACAATTCCAAGAGTCTGACGATGCAGATGAGGAATATGGAAAAGAGTCGGATCGGCCTGAGAAGACCTCTGTAAAACGCAGTGATGATTCTCGAATCAAGGACCACAAGAAGGATTTCAGTGATGACGACAATGACTATggggaggatgaggaagaggatgatgatggtggtgacAGTGATTTTGATGCTAAAGAGGCCAGCAGGGGGAGACAGGCGACAGCTAAACGGAAAAGGGCTGCAGATGACAGTGATGATGATGGTAAGGTTGTGAGGAAGAAGGGCCGACAGGTGCGTCAGGCTGCCACTAAAGCTGCATCCAAACAGAGGGAGATTCTTCTTGGGGATGGGGGAAGTGAGGATgaggagggagaggaagaggaggaggaagatgacAGTGACGTTTACACCGGTGAGGATTCAGGCAGTGATGAAGACTTCATGGTTGAGGATGACGACGATGACAGCGACTACGGCCGACCCAAACGGAGGAACTCCAAAGTGAGCAGGCGAAGCAAAGACAAGAAATCCCCTAAACCCAAGATAAGAGCTTCAGCGACCCGAGGGCCCaagaagaggagaggaaagCGTCAGACGAAGGTGAAGAGAGTCGTGAAGAAGGCCTCGCCTAAAGCCGAAGATGAAGATATCGAGAGCAacaaggaggaggaggaagaggacgagGCGCAAGAGGAAGACAGAAAGGAGTCGCCCGCCCCCAAGAAGACGCAGGATGACGAAAGCGGCGCCGAAGGAGAGGAAAACAATGACAACGGggaaaaggaggaggagaaggagaacgAGAACGAGAAAGAGGAAAAGGACGATGTTTCTGAGGAAGAAGCTCCATCAGGCGAAGACTGAGCTCTTTCGCTTGCTGGGGAACGCGTCGGTTATCTGTTTTTCTTAACGAGGAGCAGTAGGATTTATTTCCCACAATACTCAAAGAGTGTTTTGGATGTTTGTTATGTCTCTCAGCTTGTAAATACCATATCTCGAAAACGAAATCTGTAAAGTATCATCAGACCTATCCTAAATCCGTACGGTTTGGCCTAATCCCGATATGCGGTCTTtcgtattaatatttatcaatGTTTCAATTATAAGCATTGCCGAAACCATTTTGTTACAGTTGACCTTCAACGTGTAAACAAAGGACGAAGATGATTTGCCCAAAAGATAAATACAGATTATACTGCAGGCTCTGTAGTTTACTTTCGGGGCACctgaaattttttttccagatgcaTTTGAAAAGAACGCAACTGCTCGTTAATTCCCCAACCAACAATTTTTGTGACTCTTAATGTACATGATCTCATCCCAGCTGCGTTGACCGGTGAAAAAAACCCACAGGCTTGTAATGAACATATACGCTTGTCGTCATGAACTGCACTGGATTGTTGTGGCTGCAGTTCAGTCACGTGATTTCCTTGCTACATCAACTCTACGTTACATAGCTCTAGTACGCTACTTTCTCCCACTTTCCGTGCAGTTATTTCTTGATTCAGTCTAGTAAATCAGCTTTTTTCCGTCTGAGCATTTGAACTAAGATGACTTTTTCTATGGTTGTATTGAACCTCTTTCATGGTTGGCATGCTTTCATGTACGTGGTGCGAAGTATGTCGGTGGGCGGAGCCTCGGGCTCCGATGTAAACTTTCAGGATGAGTGATGTCAGAAGTGAGCTAGTGAAACCTTATTATTGACCTCTGTGATGCTtcatgtgtgcatttttttaagaatatttgaCGCTTATAGATGCCTTTTTAAATGAGCGGTCCGTTGAGCCGTTATAATGGTGAAAACGAGCTGAATTCAGTGCACACCATCCATAGCTTTCTCAGCAGCATATGACTATTTTTATTGCTTGTATCTCCATCCTAATCTGTAGCCTTTCAGTCTATATCAtaatttatccaaaataaatgtttgttttaattacgcTATTctgatttttgtaaaatttgttttacaaggaaaaaataaaatgtatctttaaagAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232097 lncRNA downstream 72907 11071410 ~ 11075961 (-) False G156726
TU232146 lncRNA upstream 8214 11162664 ~ 11163019 (-) True G156759
TU232149 lncRNA upstream 88150 11242600 ~ 11244820 (-) True G156762
TU232181 lncRNA upstream 198709 11353159 ~ 11353828 (-) True G156785
XR_006247856.1 lncRNA upstream 221727 11376177 ~ 11376688 (-) True LOC122328925
TU232213 lncRNA upstream 385173 11539623 ~ 11540045 (-) True G156812
XM_043224752.1 mRNA downstream 17348 11117682 ~ 11131520 (-) False lemd1
XM_043224751.1 mRNA downstream 17358 11117682 ~ 11131510 (-) False lemd1
XM_043224750.1 mRNA downstream 17358 11117682 ~ 11131510 (-) False lemd1
XM_043224746.1 mRNA downstream 17358 11117682 ~ 11131510 (-) False lemd1
XM_043224747.1 mRNA downstream 17358 11117682 ~ 11131510 (-) True lemd1
XM_043224147.1 mRNA upstream 21497 11175947 ~ 11213276 (-) True tafa1a
XM_043224148.1 mRNA upstream 21497 11175947 ~ 11210812 (-) False tafa1a
XM_043224149.1 mRNA upstream 21497 11175947 ~ 11210808 (-) False tafa1a
XM_043224146.1 mRNA upstream 21497 11175947 ~ 11210806 (-) False tafa1a
XM_043225473.1 mRNA upstream 84000 11238450 ~ 11241588 (-) True hsd17b10
TU232124 other downstream 43645 11100744 ~ 11105223 (-) True G156746
TU231697 other downstream 470819 10675684 ~ 10678049 (-) False LOC122328798
TU231532 other downstream 781499 10365543 ~ 10367369 (-) False LOC122328779
TU231517 other downstream 909595 10237096 ~ 10239273 (-) False ankrd52a
TU231501 other downstream 916949 10230546 ~ 10231919 (-) False ankrd52a
unassigned_transcript_2621 other upstream 363560 11518010 ~ 11518081 (-) True trnah-gug_32
TU232410 other upstream 586950 11741400 ~ 11746620 (-) False LOC122328546
TU232414 other upstream 586950 11741400 ~ 11746620 (-) True LOC122328546
XR_006247903.1 other upstream 588220 11742670 ~ 11742803 (-) True LOC122329333
TU232418 other upstream 589669 11744119 ~ 11746620 (-) False LOC122328546

Expression Profile