RNA id: XM_043225120.1


Basic Information

Item Value
RNA id XM_043225120.1
length 2239
RNA type mRNA
GC content 0.50
exon number 5
gene id dtx3
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 15719258 ~ 15724002 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACATCCCGTAATCTCTAATCCGGCTCAGCCAACAGACTAGAATGACGAACTTCCTGCCTACATTATCTTGTTTTCAGGGGGTTTTTCAGCGTAATTGCTGAAAGCGAACTACACGATAACGAAACATGCCACAGAGACGCCGAGTTCGCGTCACGAAGGAGCCCTAGGCGAAACGGTTTCGTCGTGACAGTCAACGATGCTCTTTGTACGCTTGTTGTCTTCCTGTGGCCAAGGACGGGGAATTGGAAAACCACAAAGAGCCTGAGCTGGTGTGTTGATCGAGCGAAGTGTCACCCGAACTTGAATAGGATATCCCGAGCATTAATTCGCCAGCATTGTCGTAGTTTTAAGGCACGTTCAATGCAGCGGTCGTCTGTTGACTTCTTCGTCGAGTGGAAGCAGGCATTCTCCAGTTGCAGGAAATAGGCCCGTTACTGCAATTAACGAGAATTTATGGGATCACAAGTCTCTTCTGATGAGATGAGCGTGCGAGCGGGGCAGGGCAGTGACGAGGTGCTGGTGTCGCAGGCGGTGTGGGATTACCTTGCAGCCGCAGGGCGACCCTGGTTGGTCGACTTCGAGGATAAGCAGGGGCTAAGTGCAGACATCATCCGGCGCGGGGAGCGAGGTGGCTGCTGTGCCGTGCGGCTCTCCCCGGTGGAGGGCAGCAGCAGGGCCAGAACTGGAATGATGGAGGGGCCGGTTTCTCCTGTTACACGGAAAGCTTTCATAGACTTATGCCGCTGTGCCCGAAAAGAAATGACCAAACAAGAAGCGGCTCCTAAAAGGAAACGTTCCCTATTGCCGTGCATGACAGCAATGGAACCCGACGGGGAAGGCAGCTTGTTGCCTCCGCCTCCCCCTCAACCGCGGCGTTCACAGAGGCAGCAGCAGAAATACAGGAAAAATGCAGACATGGACGCCTGTGTGGTTTTACCCATGCAACATGAGGCCGCAGCAAGGACCGGCGCTGAATTAGCCATAGCTCATGAAGAAGAGAGCACCGTTTGCTCTATCTGCATGGGCGAAATGGTGGAAAAGACAACTCTGGACAAGTGCGGCCACTCGTTCTGTCGGTCCTGCTTAGAACAGGCGTTTCAAGTCAAAAAAGCGTGTCCTGTGTGCAGGCTGGTGTATGGACAGCTTATCGGTAACCAGCCAGCCAACGGGACCATGATGGTTGAAAGAGATCCAGACCTGGAGTTGCCTGGCCATGAAGGTTATGGCTGCATATGCATTATTTACAGTTTCCCTCCCGGTTTGCAAGCGCAAGAGCATCCGAACCCTGGGGTGAGGTATCCAGGCACAGACCGGGTGGCATACCTGCCAGACAGCCCTGAGGGAAACCGCGTCCTCCGCATGCTGCGGCGGGCCTTTGAGCAGCGCCTCATCTTCACCATAGGCACCTCCATGACCACCGGCATGCATAATGTCATTACCTGGAATGACATCCACCACAAGACCTCCATATGGGGTGGACCACGATGctttgGTTATCCAGATCCTACATACCTTGTTCGGGTGACGGAGGAACTGCGAGAGAAAGGAATAACAGCTGATTGATTTGTGTGGAGCACTTGAGAAGATTCAAAGGATGGCAAACGTGCGTGCGCTTGACCACAGTCTCTTCACAAACACGCTGTGTCGAGTCAAGCCACAGTCATCTGCTGCAGCATTGTTTTGGTCAGGACGCtgtttcacaatgttttttcgTTTTCGGTCTTTATGTTTAGCTTTGTTCTTTAGTTCACGTAAGTGAAGGCAGTGTGTTTTCTTTGGTACAAACCTGGGGTGCACTTTACTGAGACGGATTGTTCAATGTACTCAGCTGAGTTTAAAATACCCACTGGACTGCTAATGTGAATGTCACGAAGGTGTACACAATTCCTCATCCACAGTCAAAACCTCCTCTTCCCTGTTCAGGTTGGAATCGCTAGGCTGTCGGCCTCCTTCTTCTGACTCACTTTCTTCCATACAAACTGTCCTTTAGAACAGCTGATGGTAACATCTGGATGGAGACAAATGGCAGAGCACAGTTAAATGGGTACAGCTGGGACAATCccatgcaacatttttttttttctagtaatCAGCACTAAGAGGCACTTTGCAATGGAAGTAATCTTTTTATTATGAGAATTTAAAGTGGATTCTGCCTGATCTTCCAAAGTGCAGGATCTAGAGAGGTTATTTGTGGGCCTTTCTTATTATAAGGTCCTAATAAAAGAGATGCAAGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247888.1 lncRNA downstream 2014 15699771 ~ 15717244 (-) False LOC122329227
XR_006247887.1 lncRNA downstream 2014 15699771 ~ 15717244 (-) False LOC122329227
TU234271 lncRNA downstream 17028 15621942 ~ 15702230 (-) True LOC122329227
TU234287 lncRNA downstream 37386 15680886 ~ 15681872 (-) True G158188
TU234264 lncRNA downstream 112178 15603848 ~ 15607080 (-) True G158174
TU234308 lncRNA upstream 4153 15728154 ~ 15789331 (-) True G158198
TU234328 lncRNA upstream 88280 15812281 ~ 15812927 (-) True G158208
TU234357 lncRNA upstream 240752 15964753 ~ 15965763 (-) True G158227
TU234368 lncRNA upstream 284105 16008106 ~ 16008915 (-) False G158231
TU234426 lncRNA upstream 377624 16101625 ~ 16102214 (-) True G158282
XM_043224806.1 mRNA downstream 59851 15622481 ~ 15659407 (-) False adcy6b
XM_043224803.1 mRNA downstream 61311 15622481 ~ 15657947 (-) False adcy6b
XM_043224802.1 mRNA downstream 61311 15622481 ~ 15657947 (-) True adcy6b
XM_043224804.1 mRNA downstream 61330 15622481 ~ 15657928 (-) False adcy6b
XM_043224800.1 mRNA downstream 61334 15622481 ~ 15657924 (-) False adcy6b
XM_043224130.1 mRNA upstream 13600 15737601 ~ 15756066 (-) False stat6
XM_043224128.1 mRNA upstream 13600 15737601 ~ 15756066 (-) False stat6
XM_043224129.1 mRNA upstream 13600 15737601 ~ 15755996 (-) True stat6
XM_043224131.1 mRNA upstream 35884 15759885 ~ 15808524 (-) True fignl2
XM_043225011.1 mRNA upstream 90708 15814709 ~ 15860823 (-) False scn8aa
TU234273 other downstream 2008 15699269 ~ 15717250 (-) False LOC122329227
TU234274 other downstream 2008 15699269 ~ 15717250 (-) False LOC122329227
XR_006247853.1 other downstream 244881 15347417 ~ 15474377 (-) False magi3a
TU233895 other downstream 1129665 14581094 ~ 14589593 (-) True fitm2
TU233846 other downstream 1388474 14326966 ~ 14330784 (-) True G157909
TU234366 other upstream 284105 16008106 ~ 16008915 (-) True G158231
TU234433 other upstream 419832 16143833 ~ 16169834 (-) True G158288
TU234490 other upstream 516809 16240810 ~ 16243395 (-) True tac3a
TU234495 other upstream 633651 16357652 ~ 16358705 (-) False G158336
TU234864 other upstream 1452651 17176652 ~ 17179779 (-) False slc48a1a

Expression Profile