RNA id: XM_043225136.1


Basic Information

Item Value
RNA id XM_043225136.1
length 2400
RNA type mRNA
GC content 0.48
exon number 17
gene id raf1a
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 883192 ~ 895323 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTGTGGCGGCGGTGACGTCACTCGTTTTTTCAGGTTATGGCGGAGCTGAACTCTTCAAACTTTTTCTGACGCAAGTACTAGAGGCTTTTGTAATGGAGCAACTTCAGGGAGCGTGGAGATCTGTCACCAACGGTCTGGGAATGAAGGAGTCTGGTTTTGAGAGCTCGTGTGTGTCTCCTGTGATCCAAGGAGTGCCATGTGTGCACCGCTCCTCAGACGACTCCAGAGCCAGCCGCACCATCCGAGTCTTTCTGCCCAACCAGCAGCGCACTGTGGTGAATGTGCGTCCAGGCATGACGCTGCACAGCTGTCTGATCAAAGCACTGAAGGTTCGAGGTCTCCAGCCGGAGTGCTGCGCTGTCTTCAGTCTCCATCCGGGACAGAGGAGcaaAAAGTCTCGCATGGACTGGAACACAGACTCTACCTCACTCATTGGGCAGGAACTTCTAGTGGAGGTTTTGGACCATGTTCCCTTAACTACACACAATTTTgttagaaaaacatttctgaaattgGCTTTCTGCGACATATGCCAGAAGTTCCTGTTAAATGGTTTTCGTTGTCAAACGTGTGGCTACAAGTTCCACGAGCACTGCAGCACAAAAGTGCCCACAATGTGTGTCGACTGGACTAACATCAGACAACTTTTCTCTGTGCACGGACATTCAAACCCTCACGTCTTCAATTTCACCAGCACTTACCCCCCATCTGGAGCGGCTCTGACGCAGAGACTGCGCTCCACCTCCACTCCCAACGTCTGCACCACCGTGGCTGTCGACAGCAGCCAGATTGAGCTCGGCACGTCTATGAGCTCCTGGTGCCCTCAGCAGTTTTGTCTAAAGAGAAGAGACGCTATACGTATTCATAGTTCAGCTAGCAGTTCTCCAAATCAGAGCCCCACAGGCTGGAATCAATCCAACATACCCACCCTGGCCCAGAGAGAGCGGGCACCATCCCTCAATCCTCAGGAGAAAGTTAAAATTCGGCCTAGGGATAAGAGAGACTCAAGCTATTACTGGGAGATTGAAGCTAATGAAGTCATGCTGCTGAACAGGATTGGCTCGGGCTCCTTTGGAACCGTACACAAAGGAAAATGGCACGGTGATGTGGCTGTGAAGATATTAAAAGTCACCAACCCAACACCGGAGCAGTTTCAAGCCTTCCGCAATGAGGTGGCAGTTCTTAGGAAAACCAGACACGTCAACATCCTGTTGTTCATGGGCTACATGACGAAAGAAAATCTAGCAATTGTGACGCAGTGGTGTGAAGGCAGCAGCCTCTACAAACACCTCCACGTGCAAGAGACCAACTTCCAGATGTTTCAGCTGATAGATATCGCCAGACAGACCGCTCAGGGCATGGActATCTTCATGCGAAAAACATAATCCACCGTGACATGAAATCAAACAACATCTTCTTACATGAAGGCCTGACAGTGAAGATCGGAGATTTCGGACTGGCCACTGTGAAGGCCAGGTGGAGTGGTTCTCAACAGGTGGAGCAAACTTCAGGATCTATTTTATGGATGGCTCCTGAGGTGATCCGGATGCAGGACAGCAACCCGTACAGCTTCCAGTCAGATGTGTATTCTTATGGCATTGTGCTGTTTGAATTAATGACGGGGGAGCTGCCGTACTCACAGATAGCGAACCGAGATCAGATAATTTACATGGTTGGTCGAGGATATCTGTCTCCAGACCTCAGTAAGCTCTATAAGAGTTGTCCTAAAGCCATGAAAAGGCAGGTGGCTGACTGCGTCAAGAAGTCCAAGGACGAGAGGCCACTTTTCCCACAGATTCTGTCCTCCATTGAGCTGCTGCAGCATTCACTGCCCAAGATCAACCGCAGCGCCTCTGAACCCTCGCTTCACAGAGCGTCACAGAGTGAAGATATCAGCTCCTTCACACTCACCTCCATGAAGCTGCCAGTCTTTTAGAAGCCAAATACTATTGCTTTGCGCTCCTGCAAGGCCGTTTGTAGAATTTGTGACCGATCAACCGAATGCATGAATCAGAATATGAAGGAATCTCTTGAAATCTCAGCTGGAGAGCTCCATTCTTAGCTGACGTTGATCTCAGAAACGAGGGCTGTTTCCTGTGTTTGCGATCCAGTGATAGATGCACTTTGACAACCAGATTATAAGTAAACAAGCCCTCAGTTTCAAGTGTCTGAAAAGATGTTGCAGTCGATGCTCAAAGAGTGATAGTGTTTGAATATACACAAAAAGAGCTTTCGGATTTAGTCAGTATTGGGCTGTTATTGAACAGCGTTCGTTATTAAGATGCCGCATAGTCTTTTGCAAATTGAGCTCTATTTGCTGACGTCAAGTACTTTGAATGTGTTATTGACTGAGTACATACTGTTAAtcaactattttaataaaattgttaaatactCA

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005057 obsolete signal transducer activity, downstream of receptor molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227921 lncRNA downstream 1008 865811 ~ 882184 (-) False vgll4a
TU227919 lncRNA downstream 1008 878522 ~ 882184 (-) True vgll4a
TU227922 lncRNA downstream 16445 865477 ~ 866747 (-) False vgll4a
TU227876 lncRNA downstream 38182 841719 ~ 845010 (-) True G153893
TU227900 lncRNA downstream 107142 770513 ~ 776050 (-) True G153911
TU227875 lncRNA upstream 2857 898180 ~ 899766 (-) False G153893
XR_006247797.1 lncRNA upstream 64951 960274 ~ 963577 (-) True LOC122328476
TU227992 lncRNA upstream 310156 1205479 ~ 1206158 (-) False G153966
TU227995 lncRNA upstream 310156 1205479 ~ 1206602 (-) True G153966
TU227998 lncRNA upstream 311377 1206700 ~ 1207587 (-) True G153967
XM_043225308.1 mRNA downstream 11623 865715 ~ 871569 (-) False vgll4a
XM_043224278.1 mRNA downstream 48611 808924 ~ 834581 (-) True tnnc1a
XM_043224279.1 mRNA downstream 67038 808924 ~ 816154 (-) False tnnc1a
XM_043224276.1 mRNA downstream 97313 780028 ~ 785879 (-) False ndnl2
XM_043225342.1 mRNA downstream 572615 308363 ~ 310577 (-) True LOC122329137
XM_043225490.1 mRNA upstream 8185 903508 ~ 905461 (-) False gp9
XM_043225489.1 mRNA upstream 8185 903508 ~ 905461 (-) True gp9
XM_043225483.1 mRNA upstream 10288 905611 ~ 958977 (-) True LOC122329272
XM_043225487.1 mRNA upstream 10288 905611 ~ 944006 (-) False LOC122329272
XM_043225485.1 mRNA upstream 10288 905611 ~ 934264 (-) False LOC122329272
XR_006247804.1 other downstream 97313 779085 ~ 785879 (-) True ndnl2
unassigned_transcript_2578 other upstream 124449 1019772 ~ 1019843 (-) True trnam-cau_118
XR_006247825.1 other upstream 160689 1056012 ~ 1064689 (-) False l3mbtl1
TU228038 other upstream 612375 1507698 ~ 1512291 (-) True smim29
TU228039 other upstream 612487 1507810 ~ 1512291 (-) False smim29
TU228042 other upstream 612487 1507810 ~ 1512329 (-) False smim29

Expression Profile