RNA id: XM_043225141.1


Basic Information

Item Value
RNA id XM_043225141.1
length 3948
RNA type mRNA
GC content 0.45
exon number 19
gene id acss2
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 6805369 ~ 6819843 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCTTCAATGGCTGTCCTCCTGCAGACACTGAGGATCTGTAATCCACGCGTGGAAGAATGACTAATCTCATGCTGCATGCACGGCTGTTTTGAATGCATGTTTGTTTcaggcaaaagctgaatttCCTCTCTAATGCCGGGAATTATTTCTAGCTTTAATCGACCTCAAACAAGATAACCTTAAGCTGGAGGAGACTGCTGTCTGTTTGACAGCTCACAATtgcatatagatttttttttacattctgtatgtaagacttcttttaaatccatttgaattattttattttgactgcaATCGGCGAAGCAACATTTAAGTCTGttggttataataataataataataactgcgagtccaatttttttttttttttaacgcgtCTCGGACAGCTCGTCCTTTGCAAACTGAATCCGGACCGTCGCCGCTTCGTTAAAACCCAATAACAGCATCTGGGTTGAAATCTGCattgaacttttcttttcttccacaTTTCAGACTCGAATGCACACAGCGCCTGTATGGGAGTGAAACTCTCCCACACGGAAGTGACTTACACACGTTAGGCCGGTGATCGTTTGTTATTTTCTAAGTGAACTTGCATTATTTGCGTGCACCGAATCGGCGATTAAGATGATCCCCGACAAGGCACCGGGCGAGGATGTGTTGCATGCTTCGGGGGATCTGAAGAAAGAAGCGCACATCCCCAGCTTTGAGAAATACAAAGAGCTCTACATCAAATCTGTCGAGTCTCCTGAGGAGTTCTGGGGAGATGTTGGCAGAGATTTTTTCTGGAAGACAAAATACACCGGCAAGTTTCTGGACTACAATTTTGACGTAACCAAGGGTGAAATTTTCGTGAAGTGCATGGAAGGCGCCACGACCAACATCTGCTACAATGTTTTGGACCGCAACGTCTACGAGAGGAAACTGGGCGACAAAGTGGCTTTTTACTGGGAGGGCAATGAACCTGGAGATGAAAAGACGGTGACGTACCGAGAGCTGCTTCAGCAAGTCTGCAAGTTTGCCAATGTTCTCAAGTCGCAAGGCGTGAAGAAAGGTGACCGTGTATCTATTTACATGCCCATGGtggtggagctggtggtggCCATGTTGGCCTGCGCTCGGATTGGAGCAGTGCACTCCATAGTGTTCGCCGGTTTCTCGGCCGAGTCATTGTGTGAAAGGATCATGGACTCTCAGTGCTGTATTCTTGTAACAGCAGaTGGCTTTTACCGCGGTGATAAGCTGATCAATCTGAAGCTGATAGCTGACGAGGCGCTACAGAAATGCAGGGAAAAGTCTTTCTCGGTGGAGAAGTGTATAATGCTAAAACACCTCACAAAAGAAGACGAGGATTCATCGGGATCTCTGTCGCCCCCAGCGAAACGTGCCTGCCCCGATCTGCAGcaggagaaacagaaagaaagagtaagGAAGGTCCGTCCGTCCCCACAGGTGCCGTGGAATCCTGAGATTGATTTGTGTTGGCactctctgattggtggagcCTCAGAGGAGTGTGAGCCTGTCTGGTGTGAATCAGAAGACCCCCTCTTCATCCTCTACACCAGCGGCTCTACTGGGAAACCTAAGGGTGTATTGCATACAGTGAGCGGCTACATGCTTTACACTGCGGCAACCTTCAAGATGGTGTTTGATTATCACTCGGATGATGTGTATTGGTGCACTGCAGACATTGGTTGGATCACCGGTCACTCATACATCACGTATGGGCCGCTGGCCAATGGCGCGACCAGTGTGTTGTTTGAAGGTCTTCCCACATACCCGGATGTGAGCCGAATGTGGGAGATTGTTGATAAATATCAGGTCTCCAAGTTCTACACGGCACCCACCGCCATCCGGCTCTTGATGAAGTACGGCAGTGAGCCTGTTCAGAAgTATAAGCGGACCTCACTAAAGATTTTGGGGACCGTAGGGGAGCCCATAAACCCAGAAGCCTGGCAGTGGTACTACAGCGTGGTGGGAGAGAAGAAATGTCCGGTGGTGGACACCTTCTGGCAGACTGAGACGGGAGGGCATGTGATGACCCCTCTGCCGGCCGCTACCCCCATGAAGCCTGGCTCTGCTACATTTCCCTTTTTTGGGGTTGTCCCTGCTATTCTGAACGAGTCAGGGGAGGAACTTGAAGGACCAAGTGAAGGCTATCTGGTGTTTAAACAGCCTTGGCCAGGTGTGATGAGAACAGTGTACGGGAACCACGAGAGATTCGAAACCACCTACTTCAAGAAATTCCCTGGATACTACGTGACTGGAGACGGTTGTCGTAGAGATAAGGACGGATACTACTGGATCACCGGAAGGATAGATGACATGTTGAATGTTTCTGGGCATTTACTAAGCACTGCCGAGGTGGAGTCGGCTCTGGTGGAGCATGAAGCTGTGGCCGAGGCAGCGGTTGTGGGGCGTCCACACCCTGTTAAAGGCGAGAGCCTCTACTGCTTTGTCACCCTCAACGATGGAATCAACTACAACCAGAAGCTGGAGGGGGAGCTTAAAAAGCAAGTGAGAGAGAAGATTGGTGCCATAGCTACACCTGACTACATTCAGAACGCACCCAGCCTTCCAAAAACCAGATCAGgTAAGATCATGCGCCGTGTCTTGCGGAAGATAGCGTGTAATGAGCGGGATTTAGGTGACGTGTCCACGTTAGCAGACAGCTCTGTCATCGAACAGCTGTTTGAGAACCGCTGCTGTGCTGCTGTGTGACCCCAAGGGGCATCCGACACAACGCCGCTGTCTGGCCCCCCCTCACACCAGCTTCAGTCCTGGAGGGAAGAGGACGAGTCTGAGCTATAATGATGTTTAGGATCATGCTAGTGGGCAGACAGAACGAAAACGCTTAGAGATGTATAATTCCTCTTCAATTCACTGACTTAAAAGAAATCTCTAGGAAAACCCCCAGTTTGGGTTTAGACATAGagttttaactgcatttttacagGACCCAACTGTATGttagaaaacattgttttacaCCCACCCTaaccaaattttatttttatgtttataatttccttctctttctccatGTGTCTGTTCTTTAATCTTCATGACTATACTGTCCTGCTTTCAAAGTGCCAACATAACCTCAAAACAagtttttagtttgtgttttttttcactactaAAATGGGAAAATGAGTCATGGTTTTGTGTACTATGTAGTAGCGCTGTTTAAAATCTCTCTGCTTTGGTTGAaggtttcattttaacatttaaagctaCACGTTGTATAGAACTTCCTATACAAGCCCAAggcatgaattaatatatacCAAAATAACGTGGTATCATGCAGGTGTCATCAATGTTCGAACTTCGTGTATATTTTACTCCTGGAACAGTTTGCAACTTTGTGATAAAAGTTTGTGCGTGAACCGATGATATATTTCTTCAGGAAAGTTATGAAAGAGCTATGATTGACTGCATAAAGACTGTGTGTTCATTTGAAAATGCACTTAACGGGAGTAAATGACATTTCTGACCATGATGGTGGTCTCGTTGTATTTCTGATACTTTCCATTTTACCAAGTCATATTTCAAAGTGTGAACATCCGCATTTTATATTGTGAAGGTATCCTCTCAAGAAGCTTTTTCAGGAGAAAAGTGATCAAATTCCAGCCATTATGAGTGTACGGTGCTCCCATGCACCAGTACTGCATCTCTGGACTGTATTTGTTAACCGTTGTCCCATTGATTTCTTCCAGCTTGGCATTAATTTGAGTTTTGGATATTTTCATAGCTCTAAGTGTAAGCATTCACTATATGATGAGCGACTGAACCTTTTGAACTTTAGATTGtgttttttaccatttattttccTTTCGACTCATTTTCTTGTAATCATTTGAGCTGAGCTGCGTCTCAAACAGAACTGGGTGAATTAAAGtgctgaaattattaaaatggttttgtcCTCTTTCGTA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K01895 ACSS1_2, acs; acetyl-CoA synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247875.1 lncRNA downstream 450 6794103 ~ 6804919 (-) True LOC122328996
TU230208 lncRNA downstream 180101 6624419 ~ 6625268 (-) True G155443
TU230195 lncRNA downstream 192845 6611993 ~ 6612524 (-) True G155435
TU230127 lncRNA downstream 291276 6509715 ~ 6514093 (-) True G155392
TU230121 lncRNA downstream 305620 6488624 ~ 6499749 (-) False G155391
TU230288 lncRNA upstream 15532 6835375 ~ 6835589 (-) True G155508
TU230378 lncRNA upstream 17286 6837129 ~ 6838566 (-) True G155578
TU230388 lncRNA upstream 109843 6929686 ~ 7067824 (-) True G155586
TU230389 lncRNA upstream 243735 7063578 ~ 7067824 (-) False G155586
TU230405 lncRNA upstream 280465 7100308 ~ 7106154 (-) True G155597
XM_043224767.1 mRNA downstream 83799 6713359 ~ 6721570 (-) True osbpl2b
XM_043224772.1 mRNA downstream 92674 6708712 ~ 6712695 (-) False adrm1
XM_043224020.1 mRNA upstream 1093 6820936 ~ 6823032 (-) False rps21
XM_043224021.1 mRNA upstream 1093 6820936 ~ 6823032 (-) False rps21
XM_043223998.1 mRNA upstream 18964 6838807 ~ 6857465 (-) True cables2b
XM_043225551.1 mRNA upstream 38164 6858007 ~ 6867300 (-) True ccm2l
XM_043224119.1 mRNA upstream 52134 6871977 ~ 6926416 (-) True LOC122328429
TU230261 other downstream 73483 6730851 ~ 6731886 (-) True G155489
TU229892 other downstream 1325550 5477914 ~ 5479819 (-) False LOC122329286
TU229887 other downstream 1350322 5454417 ~ 5455047 (-) True G155227
TU229703 other downstream 1970849 4831818 ~ 4834520 (-) False LOC122329181
XR_006247893.1 other downstream 2610373 4173914 ~ 4194996 (-) False LOC122329268
TU230274 other upstream 931 6820774 ~ 6822978 (-) True rps21
TU230387 other upstream 38172 6858015 ~ 6860648 (-) False ccm2l
TU230380 other upstream 44582 6864425 ~ 6867281 (-) False ccm2l
TU230394 other upstream 146984 6966827 ~ 6981789 (-) False LOC122328436
TU230386 other upstream 174338 6994181 ~ 6996809 (-) False LOC122329304

Expression Profile