RNA id: XM_043225148.1


Basic Information

Item Value
RNA id XM_043225148.1
length 4990
RNA type mRNA
GC content 0.47
exon number 8
gene id znf385a
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 16259075 ~ 16331672 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCTGGAATCTCTTGCACTTGTCCCGTATTGTCAGTGTGGTGAGATTGAGAGTGGGATGGGCTAAAAGAGGGAAATGCCTGTCTCTGTGTGACTCTGTGATACTTTGTGCAGGAGACACTCCCGTAAATTCATCAGGACTATTCTGACTCCAAATATTCCTGGAGCCTCCAAAAACTGTGTCTGGACGCTCCGTTGTTCATGCCAGCAAAGGTTTCTACGGGGAGTTTGTGGTGTCAGGGTGCCAGTGGAAAGACCCTCGGAGGCAGAAAGAGGAGACGTGAGGACGGGAAACAGTCAGAGGAAGAGGGTTTAATGTGGGGTACAGGAAGCATCAACCGAACAGGGGCCGTCCCTACGTTTCTGCGGACCCCCACAGTCATCCAGCCTCATCTGGATATGAAGCCCTTCCTGCAGTTTCCGATGGAGACTCCTCCTCCGCACAGCGTTGGGCTCTTCCACAACTTCAACGCGATGGATCCTGTTCAGAAGGCAGTGATCAACCACACCTTTGGAGTCCCACTGGTGAAGACCAAACGGCCAATCATTTCCTGTAACGTCTGCCAGATCCGTTTCAACTCGGAGaGTCAGGCAGAAGCCCACTACAAGGGGAACCGTCATGCTAGGAGAGTCAAAGGCATTGAGACCTCCAAGAGCCGCCCACAAGAGAATGACAAACCTCCTCCCGGGCCCGTCTCATCCCCCTCACCAACGGGACCCTTGCCTTCCATCTCAGATACCGACCCAAGCAAAACAGGTAAAAACGCGCCAGCGCCACAGTTAAATGGGCCCGCGGTGGCCCCAGGGCCAGCGGCCATTTCTGCTCCCCCTACCCCAGAGTCCCCCGGCCCTTCCGCCTGTCCTCTTCTGCCCACCCCCACAACCCCTCAACCACCTCCAGCCACATCCTCATCTCCCGGCTGTGGCTCTTCTAACCCAGAGCAGGCTGGCACCGGGGCCCCTGGGGCACCATCAGTCACTTCCAGCAACCCTGAGACCGAAGAGGACAAAGCCAAGAAGCTGCTTTACTGCTCACTGTGCAAAGTGGCCGTCAATTCGCTCTCCCAGTTGGAGGCCCATAATAAAGGCACTAAACACAAAACCATTCTAGAAGCCCGCAGCGGACTGGGCCCCATTAAGGCCTACCCTCGTTTGGGTCCGAAGCCCAGCGGGGAGCAGGGAGGCGGGGCCACAGACCCCAATACTCAGGAACGTACCTTCCACTGTGAGATCTGCAACGTGCGGGTCAACTCAGAACTGCAGCTCAAACAGCACATATCAAGTCGAAGGCACCGGGACGGAGTGGCAGGAAAGCCAAACCCCCTCCTGAGCCGACACAAGAAGCACAGGGGAGCTGACCTTGCGGATCTCACCAAAGCATTAGGCGCCGGCCTCCTGCCGAGTCCTCTGGCCGTTGCTGCGGCGATGGCAGCGGCGGCCTCCTCCAATCCCCTGGCTCTCCGCGCAGCAGCCCCGGCCCCCCATCCGCATCATCACCTCCTGCAGGGTCCGCCGCTCAGCCACGCCATTTTGAGACCAGCTCCGGGGCCCATACGCACCTCACACGGCCCGATCCTGTTCTCGCCGTACTGACTCCGCCCTCACCCCCCCTTAGCCAATCACAGCCAGTCCGGAGCCTCACCTCCAAAAGCACACTGTGAAGACGACAAAATAGCGAAACACCACAGCAATGACAAGAACCGGCCCATCGACAGTAACATCAATCATCAAACCAAGCAGAAGGGGGCGCAGCCACGAAGGAGGGTGCGACTGGCGCTCCAACCCTCGTTCCATCACCCTTAACCACCTCCCTCATCTCCGTTTGTTCGGATCGCGTGATTTATTCGTTGGTGGATGAACGAACGAATGCAGGAATTGTTGGAATAGAGCAATATCGTATGCAGAGTGCGTCCTTGTTCCTTCCCTCTATTTATACTCATACTGTGAGGTAGCAGCAGTCACACGGTAGCCAATCAGTTTCTAGACGCCCCCCAAAACACACGAAAAGACTGCAGTTAAATGTTGTTCGGAATAAATGCACCCTCAACCCTATGCACCTTGAGAAACCTACAGAAACCATCAGTACGCTTCTCGTAGTATTCGCTGTAGTCAACTCGTCCTGTCTGGCTTTTGGCATCTTTGCAAGAGGAAAACGCCCCAATCGGCGTCGCAGACAAGGGGATTGTGGGTGGAAGGTCTGAGGATGCCGTCACTTTCCCAATTCTGGCTCGCATACAGTCGCGTCTCTCTAGGGAAACGGAAGGGACACTCTTTCGTGTCGCTTTGACATCCGTTTGCGCTAGGAGCGGTTGACTGAATAAACCCCAGACCCCTGTCTTAGATCTTAGAAAATCAGTAGACGTCTATTTATTCTATTGTGTAGCGTAGTTTAGTTCAGAACATCCAAGCCGGTCGATTTTAGAATTACTCTGAAAGTGAAATATGTACGTAGAGGATGATGTAACTGCTGAAATAAGATGGACGGGTACTTTGATTCTCAGAGAAAGGCAACAAACCTAAGCACACACTTGGACTTACAGTACATACAGGCTCCTCTGTTCATTCTGTCTCTGTATGTTCGGTGGACATTATGCAACCCCAAGCAATACGGCCCCCCTTCTGTCCGACTTCCGCGTTCAAGTCTCACGAGACGGCCTGCATCCCGCAAGGACTGACATACCAGGTCAGCCACTCCGGCGGACACCCACGAGAGTCtagaaaaaaaacgaacagaGAGAAGACGCAGAGGAGGTCACAGAGGACACGACTGTGCAATCTCCCCTTTTTTTGGTATGAACTTCCTGTCTTGAATCTAAAGCcatgcaatgcatattatttttgttcttttattatgatcaattaattgttttgatgtcgtttttttttttttttttcggttcgTTTTCATAGCACACTGTTACGTTGAACAAATATCGTTGTggaaattctaaaaaaaaaaacaaaaaaaaaaatatcattgagcaaaagaaaaaaaacaaaaacaggaatatTTTTGTATGGAAGATTGAAAACCTGCACTCGGGTGGGATCTACATGTAGAATCGTGTTTGGAGGAAGTAAAGTATAAGCATAAACATCAAACTAGGGCCTGTCGTGGAGATACGCGACAGTTCACTGATGAGCAAAGTGCGACAATGTCTTACTTTTGTTTAGATATTGCAATGCAATAAGCAATTGTCATTTGTTGTAGAAGAGAATTTATAAATGGTATGGCTGCTAAAAGGCCTCCACGTTCTTCCACAGAGATAAACTAGCCTTTTTAGTACAAAAGCTGGGTGTTTAAAGCAAGAAAGGGGCACCCACAGGGACGGGCCCTTCATATTAAAGGGTCTTTTCTCATCTCTGACTGGGGGACAGGGTATATCTGAACGCAAACAATGTGTAGTCAGCCATAGCCTATGCGTATGTAGCTTAGTTCACTCTTTTGTTTGTTCGTGGCATTGTTTGCATTGTGTGGGAAACGTCATGATAATGCCATTACTTCCTGCTAACCACGGTTAGCGTCCACCATTGTGCTTTGATGGAACGTTACCTCCATTAGTTACGAGGCACTGTTACGGGTGCTGTAGTTTCACGTCGGTGTGTATCGTGTAGTGTCATGTGTGTACGGATAAAATCCGGTTCTGCGAAACCTGACAGAATCTGGcttaagggatagttcacccaaaaatgaaatttttctcgtcatttactcaccctcatgtcatttcaaaccttcGATGGGACAGGTCAGAGGAGGAGATATTTCCGAATATCCAGAAAAACACCAGAAAAAAGCACTAAAGATCTGAAGAAATTAGGATTTAAATCATACTTGAAAAATCTCTAGTTCATCATTAGTGCAAATACaaggatttgtttatttttggtgaTAAGCGCCACCTTATTAAGAGAGTGAATTAGCTTTTTTCATTCAATCTACcttctgtttggttttgtttttttcatttctgctgcttttatttttccgCAATCAACTCGTGTTAAAATTGCATCATTTAAGCTCtaaaattgttcaaataatagtttttacagTCACTTTACAAGCTGTTTAGGATGCTACCAAAACATGTATTTTCCGAGtaattttcaacttttttattttaagaaaattccATGACCAAGCATATCGATTCTTTAAAAAGATCCATACTTTTGTGTTCTGTGGaagtaaaataatcaaatagcagcatatgggtttggaactaCACAAGGGtgagtgtaaaataataaaaaaaatttttgcgGTGACCCATTCCTTTAAAACTGCACATTTGCAATCAGCTGTTTCTATCCCAAACGtaatcattaaaacaatcaGTGGACGGTGTTTGCGGCTGATTTCAGATGAGCATTTTGGGGTAACACTATGCGCGCTGACACATGCTGTAGTTTGAAACCAGGTGTCCAGTGCCCCATTGAAACCACGTGAGGTGATAAAGCCATCACAGCTAACACACTCCACAGGCTCGAGACGAACTCGCTTAGTCCCATCCGTCAACACTGTAATGACCGCGTTCATCCTGTAGTCAGAATAATGTCATCACTGTACAGAATTGTCTTTGGTAGATTTATTCAACCTTTCAGGGCAGGTGTAATGTTAGTTGGTGAAGTCTATTTTAGCCTTAGCCTTATTCCACCCCAGGCCTCTCCAGGAGCGGACGCGGATGGAGAAGCTTCGGTCAAACCTCGTCTTGccaataaatttatttttgaattgagTTGTCAGATGGGAAAACAGTATGTGTGATGGAGCGTAGCAATATTCAACTCATACTGGCTACTCTTGTTTATTGCAATAAGGAAAACAACCAATAGATGCATATGTGAGTAAAATATTATAGATGTAATTTAAATCAAACGCAGAAAATTATGGAAATACTTGGTATCAGAGAAACTTGGAGTTAccacagggaaaaaaagaggaaaaaaaatcaatgtctataaatcaataaagaatattaaaactCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234492 lncRNA downstream 11782 16247016 ~ 16247293 (-) True G158333
TU234428 lncRNA downstream 140861 16117881 ~ 16118214 (-) True G158284
TU234426 lncRNA downstream 156861 16101625 ~ 16102214 (-) True G158282
TU234368 lncRNA downstream 250160 16008106 ~ 16008915 (-) False G158231
TU234357 lncRNA downstream 293312 15964753 ~ 15965763 (-) True G158227
TU234496 lncRNA upstream 23697 16355369 ~ 16358705 (-) True G158336
TU234531 lncRNA upstream 85253 16416925 ~ 16439280 (-) True G158353
TU234534 lncRNA upstream 89847 16421519 ~ 16439280 (-) False G158353
TU234561 lncRNA upstream 92292 16423964 ~ 16424362 (-) True G158377
TU234569 lncRNA upstream 101289 16432961 ~ 16433629 (-) True G158383
XM_043224075.1 mRNA downstream 15794 16241062 ~ 16243281 (-) False tac3a
XM_043225544.1 mRNA downstream 24501 16222809 ~ 16234574 (-) False b4galnt1a
XM_043225543.1 mRNA downstream 24501 16222809 ~ 16234574 (-) True b4galnt1a
XM_043224214.1 mRNA downstream 66397 16189431 ~ 16192678 (-) True sp5l
XM_043224262.1 mRNA downstream 132664 16118392 ~ 16126411 (-) True ankrd33aa
XM_043225267.1 mRNA upstream 9774 16341446 ~ 16344687 (-) True neurod4
XM_043224641.1 mRNA upstream 28017 16359689 ~ 16376808 (-) True c1ql4a
XM_043224642.1 mRNA upstream 28017 16359689 ~ 16376797 (-) False c1ql4a
XM_043225230.1 mRNA upstream 68133 16399805 ~ 16401705 (-) False tmem107l
XM_043225229.1 mRNA upstream 68133 16399805 ~ 16401705 (-) False tmem107l
TU234490 other downstream 15680 16240810 ~ 16243395 (-) True tac3a
TU234433 other downstream 89241 16143833 ~ 16169834 (-) True G158288
TU234366 other downstream 250160 16008106 ~ 16008915 (-) True G158231
TU234273 other downstream 541825 15699269 ~ 15717250 (-) False LOC122329227
TU234274 other downstream 541825 15699269 ~ 15717250 (-) False LOC122329227
TU234495 other upstream 25980 16357652 ~ 16358705 (-) False G158336
TU234864 other upstream 844980 17176652 ~ 17179779 (-) False slc48a1a
TU234899 other upstream 1007595 17339267 ~ 17343385 (-) True G158609
TU235255 other upstream 1714266 18045938 ~ 18047878 (-) False march9
XR_006247822.1 other upstream 1899971 18231643 ~ 18235536 (-) False hnrnpa1b

Expression Profile