RNA id: XM_043225169.1


Basic Information

Item Value
RNA id XM_043225169.1
length 6576
RNA type mRNA
GC content 0.45
exon number 27
gene id ccdc30
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 12188494 ~ 12204119 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGCAGCTGCAACAAAACACTTGGTAGGCCTCGGGAGACAGGGCTCTCTGCTGTTGCGTCAATATTTACAAACAGACGGGCGTCATTAACCGCTTTAAGTCGACTTTGAAGGACAGCGACGGTcctaatttgttttattaggaTCAACAGGCGTCTGGAGAATATGAAAAGAAGCTCGCGCGTGATACCTGCGAACTAGCCCGCTAGCCAAAGTTAGCGGACTGGACTGTGCTCGGGTTGGGAAACTTTTTATATTGcagtaaaaacaaagaaaagcccGTTGAGCCCAAAGCAACGCTATTCCGGTCAAATACAGCAGATAAATTATGTACAtgtgagaaaaatatttaatgacgGATGATAATGGGTTTTGGATTATGCAGAAGATCACGTGTAGTCTTTGCGTCGTTGTTAGTGTTTAAAGGTTGTCGCTTGAGCTGTATTGTGTTCAAGTAAAAGGCATGCAAACTTATCtgatatgcttttatttttacaataaagtgaTGATTAGTCCAGAGACATGGGCCGCGGGCGGAGGCAAATGCTGGAAACCACAGTCTAAACTTTGTTCCCATAAAAACTCTTGGCTAATTTGCAAGTGATGCACGGACTCCAGTTGAGCTGTACTCGGCCATGGAAAAAAGAGAGGAAAAGGAGCTGGACGAGCTCACCCTCCGCTTGCAGAGGGACGGCGTGTCCCCTGAGGCTCCAGCAGAGGAGCGCGAGCAGCACCTGTGGTGTTTGCTCCAGCGCAGCGAGGGCAGCCTGACCGCAGCCACTGAAGACCTGCAGACCTTACGCACACAGCAGGCCAGCGAGATGAGAGAGgtggaaAATTACGTGGAGCATATTCGAAACATGCTGGAGGAGCGGGAATCTCTTACAGCGGAGTACGAACGTGACAACGAACAGCTCCGCGCTGAGCTCGCCCTAATGAAACACCAACAGGACTCCCAGTGTAAGGAGATGGTGGAGATGCTAGAGCAGGAGGGTCTAGCAGAGATCAGTCAGAGCAGTGCCAGTGAGCAGGTGGCCTATCTGCTGGTGGAGAGAGTCACTCTCCTGGAGAGACTGGAGGCTGCAGAAAGAAAACTGGACACCCAGACCCTCACTGGCAACCTCAGAGAGGTGCATCTGCAGGAGGAGCTGGATCATATGCGTCACACATTGGAAGAGGAACTCAGGCATCAAAAGGAAAACATGAATAAGGGCCACAGTGAGGAACTCGGTAGAGAACGCACAGAGCGGCAGAGGCTGGAGAGGGATCTGGAAGAGGCATCGAGTCGTCTTGCTATGGCACATAAAGAGATTCGGCACCTGACGGATGAACTAGATCTCGCTCGTAAGGTCCAAAACTTGTGTGtaccTGACCTTCAGAAAACAGGAGAGGAAGTGGAGCAGTTGAAACAGGAAGTGGACAAACTTAAACAGTGTGATATGGTGGAGCTGCAGAAGGCCAAGGAACGAAATGAAAGACTGGATAATGAGATTTGTGTGCTGAGGGATAGAGTTCGTTCCCTAGACACGGAGAGGAAAACTCTTCTTAAACTGGTTGAACAATCAACCCCGCACTTGGATCGAGGGATCAGCGATACTTTAGaacacaataaaatacactCTACACAGGGTGTTGGAAATAATGCCAATCCTGATCCATCACTGGATGTAGAGGATGAGATACTCCACAAAAGGTGTCGGAGAGTGTCTGAAGATAAGGACAGCCGTCTGCGAGAGCTGGAGAGGAGGTTGCAGAAGCAGCAGCGGGAGCATGAGGAGCTGGTGGAGAGGAATGAGGAGCTGGAGGCCCTGCTGGGGGAGGCACAGAACGCAGCAAAAGACGAGCGGGAACGACATGAGTGTGAGGTCGAGGGGTTACAGAGAAAGATTAAAAGTATCGAGGAAGAACTGAGTAAGAAAAATAGTAAGAAACCTGAGAAGAAAGATGAAGATCAGGTTCGTGGGACTGACTCTGAGCTAAGCAAGAGCATTCAAGAAAGACTTAAGTTCCTCGAGGGACGTCTTGCTGAAGAAAAAGGTTGGAGGAAACAGCTGGAGGTGGACCTATCTGTGGCCAAGGCTGctgtcaaaacagaaaaagagGTCATGCAAAGAGATCATGAGGAACTTAAGAAATTGCGTGTGGAGGTTCAGAGACTAGAGGTAGAATGTCGACAAGGAAAGGCACTTAACAAGAACCTCACGCAGATAAAAGGAGAAAAGGGAATTTTGGAAGAAAagGTGGCCCAATTGGAGCGTGCTCAGACACGACTCCAGGACAACTTGACTCTTCATACAGAGAACAGCCGTGCCGAAGAGGACCTGAGAGACAGCAGGGGACAGGTGGCAGAGCTTAATTCTATGGTGGACAAGCTGAGAACAGAACTGACTCGACTGGAGAAGGAGCACAACACTCTAAGGGATGAGCTGATGGAGAAACGTAGGCATGTGATGCAGCTACAGAAGGAGCTCAGCGAGAAAGCCCACGAGAGGCTTCAGACTGACGGCGAGAGGGAGAGACTCAGTCTGGAGCTTCTTCATGTCAAACAGCAACTCCAGAATGCTAGAGAACACTTGCCCAGAGCATTACAGGAGCACACAGCCAGCCACAAGCCTACAGTAGAGGATGATGGCCATTGCCAGCTGGCCTGTGTGAAGTCAGAGATGAGTAAGCTGCACTCCACCCTGGAGGAGGAGAGACAGCTGGCCGGCCAACACCAGCTGGCCCTGCAGGCCCAGATCAGTGAGGCTCAGGCCCGGGCTAAGGCTCAAGATTCACTCTTACAACAGAAGGGAGAGGAGAACAAACAGCTGAGGCAGGACCTTCAGAGAACCCAGAATCTTTTCACCTCTGCAGAGCGAGAGCTGCgctatgagagagagaaaaacctAGACCTTAAGAGACACAATGCATTGCTAGACCAGGAGAAgatcaagCTTTGTGCAGAGCTGAAGCAGGCCCAGGCCAAAGTAGCCCAGCTGGAGGGGAGCGCAGCAGGACAGCTGGTAGAGCTGGAGAGACTCCAGCAGAGGGTCAGAGATCTGGAGCTAGAGGTGGCCAGAAGTACTCAGAACCGACACACTAACAGCAGCTTGATGGAGGAGCTTAATTCAGAGAGAGCACGTGTGATCGCTGCTGACAAGAAGGTTGTAGAACTGCAGCAGCAATTGAAGAACACGCTGCATCAGCTGCGTCTGGAGGAGGCCAGAGCGGGAGAGACCAGCAAACTGGAGAGAGACACCAGAGACATGTCTGATAACCTTTCTGCCCTCCGAGCCCGACTGCAAGATGAGCAGTTACAGAGGAAATTACTTGAGCAAAAAGACGAGGAGCTCCAGCAGCAGGTGCGCTCATTGCGGGCAAAGGAGGCGACTTTGACACGCAACAACTCAGAGATGTCTCACCGCAACCAAGAACTGGAGACGCGGCTGCAGGTGCTGGAGAGTGAACTGAACACAGCTAGAGAAGAGCAGAGAAGCAGTCAGAAGAGCTGCCATAAGCTGGAAGAACAGCTTCTATCTTCCCAGCATGAGTCTGAGAGGCTGCAGGAGGAACTGAAGCTGGTTGTTCAGCAGCTTGACACAAACATCCGGAGATACAGTGATAAACAGTCTCAGCACAAAACCAAGTTGCGCAGAGCTAAACAGATCTTCATGAAGACGGTCACTCAACATGAGCACAGGATCCACCAACTAGAGAACGATCTGGCTCTTGCTACAAGTCTCTCAGAGAAAGAGAAGGACTGGATTAGGACTGTGACAGAAGAAAATGACCAGCTCCTCCTGGAGAGACGAGAACTTCTGCAGCGAATAAGTGAAGCTGAGGAGATGGGAAATAATGGACTGAGAACTGCCTCTACTATCCAGCAGAGAGTTAAATTTCTGGAGATGGAGAATAAACAGTTGCAAGAAAAAACTCTAACACTGGCCAATCAGATAGGAATTTTGGATCGTGCATTAAGAAACCTTCAGTCACTGTGTACTGTTGAggAGGTCAAGAAAATATTTCCTTCTGGAGCTCATGTTGATAGCCAGCTGAGGACATCAACTCCAAGTCCCCAGCCTGGGTTCGGTGACTCATGGGGAATATTGGATGCCATTCGCAAAGTCAAAGTGGGTGAGCCCGGAGTGAAGAGCCTGGAGATCACCTCATCTCTGCCCTTTTCGCAGTCCACTGAGATAGGCTACCTGAACGTGACCTCACCTGTGGCTCCCAGCAGCAGGTTAGAGCAGGAAGAGAGTCTGAGTGCCACAAGCGATGAGGCCTGAGCGAGTTACGATGACTGTGAAATGCCATTACAAGGTTTGCCAATCTGAAAAAATCACTGGATCAGTCAAGGCTTATAAATAAGTCTACTGTAAATGGGTAAATGCAGACAAATTGGCACAGCGGACAGTCTATGCTGTGTTTGGACTTCAGTTAATTTCCTTACACTTTTCCTCAATTTTGAAGCGAATGTGAAGAGCTGGATTTTCGCTCAGGCTCATATTACATGGGTTGAATTCAGCTACCTTGCCTTTGTGGCTGACATGGAGTCAGTCTAGAAGGCCTGAGCTTTTATATCATCCACAAGCATTACGCTTCACTGGATGCTATGGTCAGTAGCCTTGTCACATCTATAAGGTgccatatgtattttttttatacatttacccTATAATGGTACGACTGTGGAGAAGCACTTAAAGCACTATTAATTTGATGTTCAGATGGTACAATCTGCAGgtgtttacaaaagaaatgcacTATTTGCCTTTCAAAAATGGTAAGAATTTGAAATCAAGCgtttgtatgttttagtgaGATTCGGCGTACTATAAATATATCGGAAGGCTTGCATGTATCAGTAGaccatttctcattttctgtgctggtttgggtaaaaaaaaaaaaagcctggttGAATGTTACATGGAGCTAAGATTGCAACACTTTGTAGATAAAAGCATGTAcgctactgttcaaaggtttagggttagtattttttaagtaattaatacttttagtcAATGAGAGCTCgttgaattgatcaaaagaaCATCTCAGAGCTAATGTACTTTAACCCTGTTGGTTTAACCCCTGATAGATGATAGTATTGAGTATAAACACATATTCAGAGATATTGCCTGTGGCTGTTGCCTTTGATGATATAGAGTGCTTAATTCttctgtcatatttatttttctgcaattTTACAGTATTGCACACATTATAACTAATCACACACGATTCTGTTTAGTTATGAATGCAACGGCCTATCAGAGGCATTCAGATGAGTCACCGCCGAGGCAGCTTTTGAGTTTCGATGTAGATTACGGATGTACTGAATGATATCTGTTCACTCGCAGATTCTCTCATCATAAGAAGAAGAGATGTATTCACCATATTCAGCTTCACTGATTGTAATGGGAGTCAAGTGATATTTTTTGATAACGTATCTGCTGTCATGTCATCATGTTAAACACAAATTctgtcatattaaaatattttatggcaTCCATATGccacttaattttaaaagatatgttaatagttaatagatTACACTAACATAAGGCTGTCTTTTAGTTTGTTCACTCTCTGGTTATATTGTTCATTGGCAATCTCACAGGCTGAAATGAGGATGATATAACTGAAGATTATCACTCAATGTTATAACAGACatacacaaatttgtttaaatatctaCTTTTTGAATAGCAGTGTGCATTTGTAAGACTCACTGTAAAGACAAATGCTATAAAGCTTGCTGTATATCATCTTTTCATTGGATGATTGATCATCATCTGTTGTTGCTTATAACTATTTTTAGAGATTACTTAGTGACTGTACTTTACACATacactatattttttttccattaagaAGGCAGTAACCACAGTcatgaaatgtcaaaatatttatttagaccTTATGTATAGTATGCCTTACGTACTAATGTGAGCAATgcattgtgattaatcatttataatggaAAATGTTGTTCTGCTGGTATTAAGTTCCACTTAAGAAAACGATTTGCCTACTGACAAGTAAACAGACACGGTAGCATTACCAGCATTATGGAATTGCTGTTTACTTATGAAACGGGGTGCAATGAGAGTTTTATagatttgtataatattttgcaatccctttgtgtttttttacatagtcCTCAGAGACTGAATGACCTGTGATTTGGGAGCAAAGTCATCTGACAGCGGAGAACTGTTGTATCACTTTAATCCAAGCGCAGAGCCAAATGACATCTAATGGGTGGAGGTTGTCCTAGTTAGGGGATAGGCTTTGACTAGACGATCCAGCCCCGCCCACTGTTTCATGAGAGGAGGAGCTGGATATCAAGCTCCGCCCATTTGCTCTGCGGTGAGCAGCCTCTGTTTTGAACTGTGGCAAAAGGATCGAGATCCTGTAGTTGTGCCTGTACATTATGAGTGCATCGTACATTGTGTCCTGCTGCTATATGATATTAGGATGcaacattcacaaaatattaacatagGGCTCATGTCATTTAAACTGCGAAAGACATCAATGTACACAAAGCatgtattttcttaataaacCTATTTTCATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232394 lncRNA upstream 13606 12174530 ~ 12174915 (+) True G156933
XR_006247800.1 lncRNA upstream 150633 12030146 ~ 12037888 (+) True LOC122328486
XR_006247799.1 lncRNA upstream 153564 12030146 ~ 12034957 (+) False LOC122328486
TU232372 lncRNA upstream 155681 12030189 ~ 12032840 (+) False LOC122328486
TU232326 lncRNA upstream 215599 11946684 ~ 11972922 (+) True G156881
TU232392 lncRNA downstream 137 12204256 ~ 12205395 (+) True G156931
TU232390 lncRNA downstream 225 12204344 ~ 12205395 (+) False G156931
TU232612 lncRNA downstream 35730 12239849 ~ 12241401 (+) True G157079
TU232614 lncRNA downstream 41755 12245874 ~ 12246101 (+) True G157081
TU232604 lncRNA downstream 42098 12246217 ~ 12251978 (+) False LOC122328708
XM_043225352.1 mRNA upstream 1396 12183097 ~ 12187125 (+) True usp21
XM_043225351.1 mRNA upstream 5873 12175329 ~ 12182648 (+) True arhgef3l
XM_043224690.1 mRNA upstream 14135 12157497 ~ 12174386 (+) False uba1
XM_043225469.1 mRNA downstream 9251 12213370 ~ 12220936 (+) False si:ch211-112c15.8
XM_043225471.1 mRNA downstream 9253 12213372 ~ 12220936 (+) True si:ch211-112c15.8
XM_043224226.1 mRNA downstream 17674 12221793 ~ 12228327 (+) True ttc34
XM_043225450.1 mRNA downstream 25849 12229968 ~ 12235977 (+) True zgc:154075
XM_043225451.1 mRNA downstream 25849 12229968 ~ 12235977 (+) False zgc:154075
unassigned_transcript_2622 other upstream 669985 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 672650 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2619 other upstream 674675 11513773 ~ 11513846 (+) True trnan-guu_36
unassigned_transcript_2618 other upstream 675823 11512625 ~ 11512698 (+) True trnan-guu_35
TU231904 other upstream 1011488 11174421 ~ 11177033 (+) True G156586
XR_006247901.1 other downstream 1850245 14054364 ~ 14054500 (+) True LOC122329331
XR_006247900.1 other downstream 1852566 14056685 ~ 14056821 (+) True LOC122329330
XR_006247782.1 other downstream 2095582 14299701 ~ 14343274 (+) False si:dkey-151g10.3
TU233368 other downstream 2479871 14683990 ~ 14685316 (+) False LOC122328906
TU233419 other downstream 2508028 14712147 ~ 14714533 (+) True LOC122328914

Expression Profile