RNA id: XM_043225174.1


Basic Information

Item Value
RNA id XM_043225174.1
length 859
RNA type mRNA
GC content 0.45
exon number 5
gene id ppdpfb
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10899826 ~ 10901786 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGTATAAATGCAGGAAAACGAGTTGTTTTTGTTAGACAGCACTGCGGTAGATATTTCAGGACGTGGAGGGTCTTATCCATCCCAACCTTTTCAAATGGGCTCCGTCGCCTAGCGTTTTCTCCCCAAAGCCTCCGACTGAATTGAGAAGAGTGCTCTAATACCATCAGCAAGAGCTGCAAAAGGAGGGTTTCCATCTAAGTCACTATTTACACAAGTCTGTAAAATGGCAGCCATCCCATCTAGTGGTTCACTGGTTGCTACTCACGACTACTACAGAAggcgCATTGGCTCTACATCCAGTAGCAGCTCGTGTGGCAGTTCAGAGTACAGTGGGGAGGTCATTCCACATCACCCAGGTCTGCCCAAACAGGATTCTGGGCATTGGTGGTCCAGTTTCTTCTTTGGGAAGCAGAACCAGCCTGGTATGGGAACTCTTACTGAGGAAGCTCAGCAGAAGTCAGGTGTGGTGAGTGTGACCAATGGGCAGGTGACATGTATTGCCCGGGAGATGGTGATGAGGCAAGCGAGTGAAAGTAGCGATGGAGGCAAGTCGGAGGCGGGGAGTTCTCCTCATTCCTGAATCAGACACCGGATCAGGACACCAACGCTAGGGGACGGAATTGGctcccctttttttttctgtattaatttCCCATCCATATAATGGGCTGTTttagtatttcttttttgttttgttttttgtatccATTGTTTTATATATCACGTAATAAATGGAAGAGCTGAAACTTGCAAAaagattttgtacatttttacacatcTGTAACGCTgatggaaatgtttttgttacttgtcttattctgtgtttttcagcacaATAAATGGTCTTAAACAGCCCAA

Function

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0007275 multicellular organism development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247879.1 lncRNA downstream 17174 10880591 ~ 10882652 (-) True LOC122329022
TU231736 lncRNA downstream 171578 10727964 ~ 10728248 (-) True G156478
TU231724 lncRNA downstream 197005 10702596 ~ 10702821 (-) True G156471
TU231719 lncRNA downstream 199602 10698597 ~ 10700224 (-) True G156469
TU231718 lncRNA downstream 203149 10696452 ~ 10696677 (-) True G156468
TU231828 lncRNA upstream 57849 10959635 ~ 10959846 (-) True G156538
TU232081 lncRNA upstream 131956 11033742 ~ 11035495 (-) True G156715
TU232086 lncRNA upstream 145359 11047145 ~ 11053295 (-) True G156719
TU232088 lncRNA upstream 148507 11050293 ~ 11057995 (-) True LOC122329093
XR_006247882.1 lncRNA upstream 149450 11051236 ~ 11057975 (-) False LOC122329093
XM_043224780.1 mRNA downstream 134818 10730061 ~ 10765008 (-) False dnmt3bb.1
XM_043224779.1 mRNA downstream 134818 10730061 ~ 10765008 (-) True dnmt3bb.1
XM_043224776.1 mRNA downstream 172257 10718234 ~ 10727569 (-) True dnmt3bb.2
XM_043224777.1 mRNA downstream 172310 10709346 ~ 10727516 (-) False dnmt3bb.2
XM_043225474.1 mRNA downstream 190657 10705983 ~ 10709169 (-) True cdc42l2
XM_043224396.1 mRNA upstream 2094 10903880 ~ 10914203 (-) False tpd52l2b
XM_043224394.1 mRNA upstream 2094 10903880 ~ 10914197 (-) True tpd52l2b
XM_043224395.1 mRNA upstream 2094 10903880 ~ 10914196 (-) False tpd52l2b
XM_043224397.1 mRNA upstream 2094 10903880 ~ 10914195 (-) False tpd52l2b
XM_043224401.1 mRNA upstream 2094 10903880 ~ 10914193 (-) False tpd52l2b
TU231697 other downstream 221777 10675684 ~ 10678049 (-) False LOC122328798
TU231532 other downstream 532457 10365543 ~ 10367369 (-) False LOC122328779
TU231517 other downstream 660553 10237096 ~ 10239273 (-) False ankrd52a
TU231501 other downstream 667907 10230546 ~ 10231919 (-) False ankrd52a
TU231376 other downstream 1066144 9832128 ~ 9833682 (-) False zgc:153284
TU232124 other upstream 198958 11100744 ~ 11105223 (-) True G156746
unassigned_transcript_2621 other upstream 616224 11518010 ~ 11518081 (-) True trnah-gug_32
TU232410 other upstream 839614 11741400 ~ 11746620 (-) False LOC122328546
TU232414 other upstream 839614 11741400 ~ 11746620 (-) True LOC122328546
XR_006247903.1 other upstream 840884 11742670 ~ 11742803 (-) True LOC122329333

Expression Profile