RNA id: XM_043225205.1


Basic Information

Item Value
RNA id XM_043225205.1
length 1546
RNA type mRNA
GC content 0.44
exon number 10
gene id haus8
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 5872294 ~ 5876865 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTGACAGGTGGCGCTGAACGCTGCTCGAATCCGCGCTTCAAACGACGAGGAAGAAACTCGACAGAGCGCGCGGCGGAAACGACCACGGACAttTATCCACTGAAAATGAAGGCAGCGGAAATAACAGCGGTGCGAGGAGGAAAACCAAAGgcacGTTTGTGAAGCCTAGATTCATGCAAACTGAAACAAAGGCTCCTACAAAGGGCAGTGTACAGCAGCAGTCAGTGCTGATGCCACCCAGACCGTCCTCTCCCAGAGCGAGCAACCCGCGAAAGCCAAGGGAAGGCATACATCCGAGACGAACAATAAGCTCTTTAGCAGATAATGACTCTGCATTGGTCGCAAGCATTCTGGAGTCCTCAAATGTGGGAGGAAGTGTCTTTCAGTCGACTGTTTTGGATGGTCACTGCATTCGTCCAGATTTTGATGTCTCTGTCATTAATGATAAAGTTGCACAGCCAAACACAGTGGACCCTGATAACGAGGAAAGGGACATAGCGACGGAGACCTTTATTTTGGCTTTCCTCACTGCTAAGATTGAGCACAACACCCGAAAATGTAGAGAGGAGGCTGAGAGGAACATTCTGGCTGTGATGGAGAAAGAGCAGCAGTTATCCGCTCAAGTTAGTCGCAAGAAACGTCAGTATCTGCTGCTGGAAAAGCAGAAACAGCTGAACAGTCTACTGGACTTACAGATCGAGGCTTTAGGTCCCGTTGCTGCTGAAGTAAACACATTTGCAGAGGACTACGAGTCTTTTGCCTCCGCCATTGATGCCACGAGACACAAGCTTCCTGTGAAGAACGTGGACGCTGGAGAGGACGCAGACCAGTTTTTAGaAAAGGCTGTTGAATCTCTGAATCGGAGTGAGCGTGTCTTGCAACGTTATACTGAAGACGTTTCCACTGATTGTGAGGCTTCAAAACGCTGTCTCAAAGAGATGGAAGACACGGCTAATGAAATCAGCCAACAGGTGACGAGGACTTTTTCTGATCTTCTAGAGGTGTCCTCGCTTGTAAGCCGAGAGACGGTTTTGATCAAGCAGTCACTGGAGGAAGAAGAGATCGGACCGAGCACAGCCCAGGCTCTCTTCTGTCCCTCTGCGCTCTGATACATGATCACATCTGTTTACAGTTTAATAGATAGCGTGTTAATAATCAATGGATAGTAggtatttatttcaaacattgtGACTAATAGCTATGTGTTCGATCAGCCCGGTCGTGCagtgtatttaataaaacaacaaccatattaattcatgtgtgttataattagtttgtttaaattaaaagaagagCCCAAACAGTATGTATCTGTGTATGTAGATAGAGAAGCATGTGATACTGTATTCATATTCTGTTAATAACTGTCTTGCCCAGTGTTCATTTGCACATTTCTACATtggacaaaaaaacaagcaaaaccgTTTTCAGTCATGAAAACATGAAAGGTCCCATGTTcaaaaaaagtagattttattattataatttattaacggtgatttgattaaatgttcTTAACATAATAAATCTAAGAGaaccctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247895.1 lncRNA downstream 209338 5654018 ~ 5662956 (-) True LOC122329299
TU229905 lncRNA downstream 324586 5525041 ~ 5547708 (-) True G155238
TU229897 lncRNA downstream 375820 5492731 ~ 5496474 (-) True LOC122329188
XR_006247896.1 lncRNA downstream 440770 5430546 ~ 5431524 (-) True LOC122329300
TU229770 lncRNA downstream 759330 5111844 ~ 5112964 (-) True G155157
TU230003 lncRNA upstream 315327 6191097 ~ 6191320 (-) True G155308
TU230114 lncRNA upstream 473237 6349007 ~ 6351825 (-) True G155388
TU230159 lncRNA upstream 608884 6484654 ~ 6484915 (-) True G155413
TU230119 lncRNA upstream 609669 6485439 ~ 6488844 (-) True G155391
TU230121 lncRNA upstream 612854 6488624 ~ 6499749 (-) False G155391
XM_043225202.1 mRNA downstream 115 5869126 ~ 5872179 (-) True sac3d1
XM_043223967.1 mRNA downstream 7077 5859911 ~ 5865217 (-) True LOC122328332
XM_043225413.1 mRNA downstream 13547 5853109 ~ 5858747 (-) True LOC122329222
XM_043225508.1 mRNA downstream 48047 5817641 ~ 5824247 (-) True LOC122329283
XM_043225521.1 mRNA downstream 146031 5722488 ~ 5726263 (-) True LOC122329292
XM_043225160.1 mRNA upstream 10842 5886612 ~ 5893723 (-) True pigt
XM_043225392.1 mRNA upstream 44003 5919773 ~ 5936063 (-) True sycp2
XM_043224104.1 mRNA upstream 61862 5937632 ~ 5939803 (-) True ppp1r3da
XM_043224102.1 mRNA upstream 61862 5937632 ~ 5939802 (-) False ppp1r3da
XM_043225324.1 mRNA upstream 68911 5944681 ~ 5949953 (-) True ttll9
TU229892 other downstream 392475 5477914 ~ 5479819 (-) False LOC122329286
TU229887 other downstream 417247 5454417 ~ 5455047 (-) True G155227
TU229703 other downstream 1037774 4831818 ~ 4834520 (-) False LOC122329181
XR_006247892.1 other downstream 1677296 4173914 ~ 4194998 (-) True LOC122329268
TU230261 other upstream 855081 6730851 ~ 6731886 (-) True G155489
TU230276 other upstream 890838 6766608 ~ 6822978 (-) False rps21
TU230273 other upstream 897808 6773578 ~ 6822978 (-) False rps21
TU230275 other upstream 897808 6773578 ~ 6822978 (-) False rps21
TU230277 other upstream 897808 6773578 ~ 6822978 (-) False rps21

Expression Profile