RNA id: XM_043225218.1


Basic Information

Item Value
RNA id XM_043225218.1
length 3586
RNA type mRNA
GC content 0.45
exon number 2
gene id wu:fa11c10
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11411884 ~ 11428747 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCATGTTACAGAATCCCTGTCTTTGGAAgaatctttttttctgcaatCCAGGAAAAGTAAACTAGAAAAGAGTCCAGGATTACAAGAAAAAGAGGATCAGGTTTTTAAGGAGCGTTTTACAAGTCTAAGACATCTGGAGTTTGAGAGGAAGGGACAGAGTCACAGTGTTTCACCAGAACCGTTCTGCTAACCTTTCAGCTGCAAGGAGCTCGATTTAGGATCTGCCCCATCCTAGTGGGTCACTCAGCCGGACTGATGTGGAATGCGACCCTTTATGACCCCATCCCACGGGCCTCTATTCAATGAGCCGGACTCAGGAGAGAACAGATAATAGAGGCAAAAGTCCGGCACACAAAAAAGAGTGAAGTAACAGCAGCAGGAGTGTTCATACTGGTAAGAAAGTTAAAGGGGCCCTTGAAGGTGGGGAAACATATACAAaggaaaaggaataaaaagacCTGTGACTACAAAAGTCTTTCTTTGGAGTGCAAGACTTTCTTGAACACAACAAAAACTTTGACCCTTAGCCTTGATTTCACCTCTTAAATTAATCCCACTTCTAACAATCATGCCAGTGGAGACCCTTCGTCCCACAGATGGCCGTCTTACTGGGGGTCCATTCACCTCTGCCATGCCTTTCCGAATCCTCAACAAAGGCCCGGACTACTTCCGCAGAGCCCCCGAGCCAGGAACGCGGAAGCTGAGTGCAGTTGAGCGCCTGGAAGCAGACAAGGCCAAGTACGTAAAGAGTCAGCAAGTAGCACTCAATAAGCAAGAACCTGTGAAACCCCCAATCATCCGCAAACCGCTGTTATCACCAAGCATGATGATGCAGTGCCGAATAAACACTCCGCCTGCGAGGAAGATTACCCGGCGCATACTTGAGACAGAGAATGGAGGTCCAGATCATGGCATGAGCAGAGGTCCACAACTCAACCTTGAAGTACTCAATAATCTAATCAACGTTTGTGACGGACCGCTTGCATCCTCACCTACCCCATCTTCTCCTTCTCCCTCAGCCTCCTCACCCTCTTCCGGAGGTCAGAGTGTTGGTAGTGGACAATCTGCAGAACCTCAGCACTGCATTAACTTCAAAGCACACATTGGATCAACGTCCAACTCCTCTCGCACCTCCTCTCCGCTTAACAATCAGTCCTCACCTGCTGAGCCCAGCCGAAGGCCACCTCCGGTCCCAGCCAGGGTTCCCCGGCTGGTACCACAAGGTAGTTACGGGACCACCAACTCTGTAACTGTACGACGGGTGGACGTGCGACCGCAGGCAGAGATCAGGAAACCTCAGAGATTGCCTCTTCAACCCAAACCTAGACAAGCTCAAGTAGCTCAACCACAGATAGCCCAGCCACAGGCACCTCCCACACAGCAGCAGCCTTCGGGAACTTACCCTGCATCCCCCTGCATCCCCTCCAGCCCCCTGCTTTTACGTGCTGGCGTTCTACCCCCGGCTTCCCCTGCTTTCACCCGCATTTCCTCAGCCAGCTCTCGGGGGTCACGTCCCGGTTCAACCCGGAAGCATCCCTCCCTCCACCGCTCCAAATCGGACTTGAGCGACCGCTACTCTCGGGCCACAGCTGACCTGGAGCGCTTCTTTAACTACTGTGGACTAGACCCAGATGAGGTGGAAGGAATGGGTGGTGTGGAGCGGTTTGCCCGGGCGAACTCGGACATTGTTTCGGTCTCCAAACTCCGGAGCGTCAGTACACCTAGCTCAGAGTGCGGGGACGGTGGGGACGGACGccgaggagaggaggaggaagatgatgaagatgacgatgGACCTATAAAACCCAGTGAGCGTGTTCCTTACGGCATCTCAGTCATTGAGAGGAACGCACGCGTCATTAAGTGGCTCTATGGTATCCGACAAGCACGGGATGCCTCGCAAAATATCTCCAATGTCTAGAAGCTTCTCTCTGGTGGTCTACTCAGACATAGACAGTATAAATAAGAAAGAGACTTGCTGTAGTATTCAGTTGATGTCTATCACACacctaatatttattatgttcttGTTTGAAGATATTTAAAGGCTCtgacaaatatttgttttgtttgtatttgccTTACTATACGGATAATGTTCATGATGTTTGTTACATAGAATTTACATGGGCATCCTGTCGTTTTTTGAGTATCTGATTATCTGCAAGGATGATGTACCTCTAGATGCGGAATACTACAGACTCAGCACTGTGACTTtgatacattttgattttaagcAATAAGATTAATGCTAAAGGCACTAAAAGAGTGGATGATGATTATGAGAGTGATGAAAGCAGCAGTCGATGTGCTGTGTCGGTGCTGTTTAGGTACAAAGTCTGTATTAACAGCAGTGCTGTCGGACCCGTGGCCTAAGCTAATTCTTATAGGAACCGTTGTGTTCATCAAAGTATTGGAGATCAAGCAGGTACTTTCTAGTTTTAGAAATCTTTGAAGAATTGAAGAATgaatgaaccttttttttttgtatgcttgTGTTAATGAGGTCATCATTTGGTGTCGGTGGTAGTAAGACCTCAGGGACAGGTTTAATAAAGCCACACCTAGAACAGAGACACAACCTGCAAAGTCCTAAATTGCACACATGTAGAAACTGAGACACATATGAACCCCTGCTCACTGTGCACACACTTTTACTCCATAGGTGTCAAATTCACAAGTGCGTCAGATTTTCAGTGtagacttgtttttgtttgttttgttgtttttggaagGCGAGACTATGATACTGTGAAGAATTCAGAGCTTCCACAGAGGTGCTGCTCCTCTGCAAACATGGCTGGTAGACTGTTATGTTGAATATAAGTTTAGAAGTTCAAAATATAAGCATGTGAGAGCCTCTTGTCAGCATGCACACGTGGATGTACAGCTGTATTACGTGGCAAAGCACAGTTGCACGATGTGCACTTCTCAAACATGCATTCCAAAATATATGGGTGTACATTCCATTCAGCTTAATGTTTATGTATGATTtgtgtgggttttgtttgtttgtgactGTTCCTTCCTTCATAGGTTATGTTTTAAACAGTTGTGTAAGACAGGTAAGGTTTGAGAGCTGACAGAACTGAGAGAAAGAGTGTTTGGCTCAGTACTTTTAGGGGAAACAAAGCTGTTAAATCAGTTTACTGCAGATTTTTCACAATTGTAGTGAGAAAGGGAAGCCTTACGAAgagaaaaaatactattttgatGGAAGTTGGTTGAATATGTGCACAAGTCATGAGGCCACACAAATGTTCACTGTTGGTTGAgagtttttttgaaagaaagaattgctttattaaaaaaagcacaataatcAAAATTTGTGCAATCTCAATATAGCCATAATTGCATGAAGAgctaaatgcaaaacatttattgactGAAATACATTTCTCTGCAAGCACATTCagaaagaatacaaaaaagGTACAAACCCTCAAACAATTCATTAGTTATTGAAATAGGAGGGTAACGTGGTGGTTCTGCTTGTTTTCTGAAGTTTACCATTGACTTGGAAAGAGTTGAATGCAAAATCGGTCCTTTGAAGATGTCAATAAAGATatgatgtttttgaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247856.1 lncRNA downstream 35196 11376177 ~ 11376688 (-) True LOC122328925
TU232181 lncRNA downstream 58056 11353159 ~ 11353828 (-) True G156785
TU232149 lncRNA downstream 167064 11242600 ~ 11244820 (-) True G156762
TU232146 lncRNA downstream 248865 11162664 ~ 11163019 (-) True G156759
TU232102 lncRNA downstream 335923 11071410 ~ 11075961 (-) False G156726
TU232213 lncRNA upstream 111757 11539623 ~ 11540045 (-) True G156812
TU232436 lncRNA upstream 334574 11762440 ~ 11763023 (-) True G156962
TU232440 lncRNA upstream 335843 11763709 ~ 11850582 (-) False atp2b3b
TU232453 lncRNA upstream 353701 11781567 ~ 11782366 (-) True G156971
TU232457 lncRNA upstream 365737 11793603 ~ 11851710 (-) True G156972
XM_043225286.1 mRNA downstream 16411 11390561 ~ 11395473 (-) True nsfl1c
XM_043225005.1 mRNA downstream 25161 11379548 ~ 11386723 (-) True trpc4apb
XM_043224132.1 mRNA downstream 55205 11354880 ~ 11356679 (-) True zgc:103759
XM_043224638.1 mRNA downstream 60445 11325493 ~ 11351439 (-) False arhgap4b
XM_043224667.1 mRNA upstream 19133 11446999 ~ 11464891 (-) True bcl2l1
XM_043224668.1 mRNA upstream 20316 11448182 ~ 11464910 (-) False bcl2l1
XM_043224666.1 mRNA upstream 38490 11466356 ~ 11488430 (-) True arfgef2
XM_043225019.1 mRNA upstream 62300 11490166 ~ 11507285 (-) True pard6b
XM_043225020.1 mRNA upstream 62300 11490166 ~ 11507283 (-) False pard6b
TU232124 other downstream 306661 11100744 ~ 11105223 (-) True G156746
TU231697 other downstream 733835 10675684 ~ 10678049 (-) False LOC122328798
TU231532 other downstream 1044515 10365543 ~ 10367369 (-) False LOC122328779
TU231517 other downstream 1172611 10237096 ~ 10239273 (-) False ankrd52a
TU231501 other downstream 1179965 10230546 ~ 10231919 (-) False ankrd52a
unassigned_transcript_2621 other upstream 90144 11518010 ~ 11518081 (-) True trnah-gug_32
TU232410 other upstream 313534 11741400 ~ 11746620 (-) False LOC122328546
TU232414 other upstream 313534 11741400 ~ 11746620 (-) True LOC122328546
XR_006247903.1 other upstream 314804 11742670 ~ 11742803 (-) True LOC122329333
TU232418 other upstream 316253 11744119 ~ 11746620 (-) False LOC122328546

Expression Profile