RNA id: XM_043225228.1



Basic Information


Item Value
RNA id XM_043225228.1
length 939
RNA type mRNA
GC content 0.43
exon number 5
gene id tmem107l
representative True

Chromosome Information


Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 16399805 ~ 16401705 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


AAGAAGAGTGTTGTCGTAGCAACCCGAAGCTTAACGTTACAGCGAAAAGCTGTCCACGGGTTTTGTAGATAAGTATGAACGTTGCCTAAAAGcgttttatttgtgttctgcTTTAACCCCTGTTGGAAACAAACTTACTGTCTGCACGCCAACTGAACTATATTCGCAATCTTTAACACATTTTAGAGAGTTGGTACGTGCATCCGCGGTTAATGTCACACCTTTTGCGTAAACCGCTGAGTGCTATGCTCGTTTTCAAAGTGCgatgttgttttctgtttagttCAATGTCGGTGGTAAGCAGTCTGGTACCAGCCCGTTTCCTGACTCTCATCGCTCACCTCGTGATAGTCATCATCATATTCTGGTCGCGGGAGAGCAGTGTCAGAGCCTGCCTACCACTGGATTACACCGATGAAGAATACAGGTTAGAGGACACACGCCTCATAGTGGCTTTATCTGTGACCCTGGGCCTGTTGGCTGTCGAGCTGGTTGGGTTCCTCTGTGGTGTCTCCATGTTCAACAACAATCAAGCTCTTCTATCTACAGGATGTCACGCCAGTGGCTCTGTGGCTTTGCTCTTCTTCATGTTTGAGCAATGGACCTGCAGCATCTACTGGTGGATCTTTGGCTTCTGTAGTGTGATTCCAGCACTATATGAGATGATCCTTTTTGTTGTAGTGTTTGGATTTAAGAGGAAACCTCTATGAGGATCTCTGCCCTCTCTATTGTCCTTTCATGACTGACGTACCAGAATATCCTGAAACCAGAATAATACTCACTGGCACTATAAATAAGTGTTTTCCATGAGTTCTTAGAAAGCTAAATTATGTTTGAAAGCTTTCGGATGGTTTCAACCTGTTGACTAATTTACTTCTTGAAATCATTGCATTTTGTACACATTTAGATGAATTAAAGCATCTTGTATTTTGCTACAAA

Function


GO: NA

KEGG:

id description
K22764 TMEM107; transmembrane protein 107

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU234496 lncRNA downstream 41100 16355369 ~ 16358705 (-) True G158336
TU234492 lncRNA downstream 152512 16247016 ~ 16247293 (-) True G158333
TU234428 lncRNA downstream 281591 16117881 ~ 16118214 (-) True G158284
TU234426 lncRNA downstream 297591 16101625 ~ 16102214 (-) True G158282
TU234368 lncRNA downstream 390890 16008106 ~ 16008915 (-) False G158231
TU234531 lncRNA upstream 15220 16416925 ~ 16439280 (-) True G158353
TU234534 lncRNA upstream 19814 16421519 ~ 16439280 (-) False G158353
TU234561 lncRNA upstream 22259 16423964 ~ 16424362 (-) True G158377
TU234569 lncRNA upstream 31256 16432961 ~ 16433629 (-) True G158383
TU234575 lncRNA upstream 42101 16443806 ~ 16444037 (-) True G158388
XM_043224641.1 mRNA downstream 22997 16359689 ~ 16376808 (-) True c1ql4a
XM_043224642.1 mRNA downstream 23008 16359689 ~ 16376797 (-) False c1ql4a
XM_043225267.1 mRNA downstream 55118 16341446 ~ 16344687 (-) True neurod4
XM_043225148.1 mRNA downstream 68133 16259075 ~ 16331672 (-) True znf385a
XM_043224075.1 mRNA downstream 156524 16241062 ~ 16243281 (-) False tac3a
XM_043224307.1 mRNA upstream 86521 16488226 ~ 16505803 (-) False ribc1
XM_043224308.1 mRNA upstream 86521 16488226 ~ 16494459 (-) True ribc1
XM_043224027.1 mRNA upstream 139809 16541514 ~ 16545688 (-) True LOC122328366
XM_043224317.1 mRNA upstream 207773 16609478 ~ 16616339 (-) True LOC122328572
XM_043225250.1 mRNA upstream 272532 16674237 ~ 16677367 (-) True LOC122329052
TU234495 other downstream 41100 16357652 ~ 16358705 (-) False G158336
TU234490 other downstream 156410 16240810 ~ 16243395 (-) True tac3a
TU234433 other downstream 229971 16143833 ~ 16169834 (-) True G158288
TU234366 other downstream 390890 16008106 ~ 16008915 (-) True G158231
TU234274 other downstream 682555 15699269 ~ 15717250 (-) False LOC122329227
TU234864 other upstream 774947 17176652 ~ 17179779 (-) False slc48a1a
TU234899 other upstream 937562 17339267 ~ 17343385 (-) True G158609
TU235255 other upstream 1644233 18045938 ~ 18047878 (-) False march9
XR_006247822.1 other upstream 1829938 18231643 ~ 18235536 (-) False hnrnpa1b
TU235534 other upstream 2345686 18747391 ~ 18754712 (-) True G159076

Expression Profile