RNA id: XM_043225239.1


Basic Information

Item Value
RNA id XM_043225239.1
length 4725
RNA type mRNA
GC content 0.46
exon number 29
gene id chl1a
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 6136561 ~ 6183159 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAGCTGTCAGAGGTTTGTTATAATGCACATGAGTGTTTGTTCTCCAGCGACTGGAGTTCATGCTTGCTTGGTCTGACTGTATTGGTTCACGTCAGAAGGACAGTAGCGTCTGAGAGAACGAGGATATCAAAGATCTTCTCCTTGGAGGAGTCGGTGAAGAGCTCTTGCTAAAAGAACATCTTTGTGAGGGTGTTTTCTGCATTTCCTTCACCTTTGTCCTCGTCTGCTGGCTGGGATGAGGGGGCTCAGGAGCCTTATTGTCGGGCTCCTGTCGGCCTTCTTCTCCACTGTCCTTGGTCTTTACTTCCCTCCTCACGTGGAGCAGCTGCCGACCATCACCGCTCAGACCTCAGGCTCTATCATTGCCCTGCCATACGATGAGAACTTCCTGTTCAAGTGTGAAGCCAAAGGCAACCCGAGGCCTACGTACCGCTGGATGAAAGATGGAATGGATTTTGACCCGCATAAAGACCCTCGCCTCATTAAAGAAGAAAGCAGTGGTACCTTTGTGATACCCAACACTAAAGAGAAAGTGAAATACCAGGGAAAGTACAGATGTTATGCCTCAAACAGGCTTGGAACCGCAATATCAGAGGAAACAGAATTTATTGTACCTATGGTACCCAAGTTTCCCAAGGAGAAGACCGAGCCAGTGGTGGTCACAGAGGGATATTCGGTGGTTTTGGAGTGTAACCCGCCACAAGGAACTCCACCTTGGCAGCTGTACTGGATGACCAATGATCTCCGACACATTGAGCAGAATGAGAGGGTGTCCATGGGCCTCAATGGGAATCTGTACTTCTCTAATACACTGGTGGAAGACAGCCACGATGACTACTGCTGTTTTGCCTCCTTTTCCAGAATACGCACAATCGTTCAGAAACCCCGCATGGTCCTGAGGGTCAAACCAAGCCAGGGGGATGATGGCATCACGAGTGTTCAGAAGAGGAAGCCGAGCATTTTGGTGCCCTTGAGTCATTCAACGACGTACCTAAAAAAAGGAGAAGAGCTGGAGCTGGAGTGTATCGCAGCAGGACTGCCCACACCGACGGTAGAATGGATCAAGATGTGGGACAACTTACCGGAGCGTACACAAATCAAGAACTACGGAAAGCTTCTGACTATACCAGACGTCACAGATCAGGATGAAGGGAAATACTTGTGCAAAGCCAAGAATGATCTTGGTGAAGCTGTGCATCATTTCCAAGTTGTTGTACAGGAGCTGCCCAGCTGGCAGGAGGAGCCAGTGAAGAGTCAGTTAGCAGAGATTGGATCTGACATCCACATCAAGTGTTCTGCTGGAGGAAAACCACAACCCACAATCACCTGGAAGAGAAATGGCCAGCCTCTTGATGATTTTCCTTCTACCAATTACAAAGTGCTTGACGACAGAATAATCATCCTCAAAGCGGAGCAAAAAGACACAGCCGTGTACCAATGTGAGGCCTCCAACAAGCACGGGACCCTGCTTGTCAACACCAACGTGCTTGTCATGAATCATCCTCCTTTGATTCTGACGCCGAATTATCTGGAGTACGCGACCATGTTAGGCAAGAGTGTGATTATGGACTGCAAAGTCTTTAGTTCACCACCTGCCACCATTAACTGgaGTAGAGAAGACCCAGAGGGCTCTCTAGATGGAGAGAGATATTCTCTCCTGAAGAATGGCTCCCTGCAGATTCACAAAGTCGAGATGGAAGATATGGGCCAGTACAAATGTTTGGCAAAAAACTCAGAAGGCGCCGCGAGCCTCACCACTGAACTTTTCATTAAAGATTCAACGAGGATTGTTGAACCTCCTCAAGACATGAAGGTTAAAAGAGGATCAATGGCGGAGCTGGAGTGCCAGGTGGAGTGCGATCCCACCCTCAGAAGAGAGCTGGAGATCCTGTGGATGAAAGACGGGATGAATATCCTCTCAAACTTCTCTGAAGGATATTTCACAGATGATGGCGTTCTCCAGATTGTCAATGTGAACCACAGTGATCAAGGGAATTACACCTGCATTGTTCGAACATCACTGGACCAAGATACTGCTTCTGCATACATAACTGTGTTAGATGTCCCAGATCCACCAGTTCAGCTGAGACTCAGTGACCTGAAAGGTCGCAGTGTGAGGCTCCACTGGGCGGCCGCCAGTGATCATAACAGTCCCATAACAGAGTTCATCATCCAGTATGAAGAGAACCATTGGGAGCCGGAGAAGTGGAAGGAGCTTCTACGAGTCGCAGGCAGCCAGTTTTCAGCCCCTGTGACGCTCTACGGCCACATTAACTACCAGTTCAGAGTCGTCGCTGTCAATGCTATTGGGGGAAGCAGTCCCAGCATGCCCTCCGAAAGATATAAGACACCTCCCTGTGCTCCCGACAGGAACCCAGAAAACATTAAGATTGAGGGTCACCTGCCACATCAGATGGACATCAGCTGGGagCCGCTCCTGCCTGTGGAGCACAACGGTCCCGATCTGGAATACAAACTGAGCTACAGGCTCCTGGGTGTCGAGGACAGTTGGAAAGAACAGATGGTGACAAGACACTCATTTGTGGTGCGAGACACCCCAACATTCGTCCCCTACGAGGTCAAGATCCAGGCCTTCAACCGTCACGGGTGGGCACCAGAGCCCAGAGTGGTGACTGGTTATTCAGGAGAAGACCTGCCCTTGGTGGCTCCCGAAGACTTATTTGTGGAGGTGTTGAACTCTACGCTGCTGAAGGTCAGCTGGTCACCGGTGCCCCAAAGCAAACTGAGGGGCCATCTTGGAGGATACACTGTGCACTGGTGGCAAACTCGAAGTCTGTTGACCTCTAAGAGAATTCCCTCAGAGAGACAGTCTCTCACCATCCCTGGATACAGGAGTCACACCATGGTGCCGGGACTGAAGCCATTCTCTGAATATAGCCTGACTGTCAACGTCTTTAACCGGAAAGGGAATGGGCCCAGCAGCAGTCCCTTCTCTTTCGCAACTCCACAGGGAGTTCCTGAGCAACCTCCCATCCTGAGAGCCACAAACTTTCAAAAAGACTCCATCACGCTGGTCTGGGCGCCTCCGCATGAAACCAATGGCTTTCTCACAGGATACTTGCTGCAATATCAGACAGTTAATGAAACTCTGGGTGAGCTGAAATCTGTGAACATCAGTGCACCAGATACAACACAGTGGGTCTTGCGTGATCTGCAGGAGGACAACTGGTATAAGTTCTACCTGAGCGCGTGCACGCAGATGGGCTGCGGGTCAACCATCAGCGAGGAAGGAGGCACCGTCTCTGAAGCGTCTACAATGCCCGAACATTCATTTCCTGAAGTTTCTACAGTCACAACTGAAACTTCAACAGAGAGCTATGATCTGTCAACATCCGAGGTGACATCTTCTGAGTTGAgGCAACCTTTCTCTTTCACTTCATCTAACACAGACACTCCAGTCAATACCACCTTTCCTACCTTAGTGTCTAGTAAACAGCTCGTGGCATCCCAGGAGTGGTTTGTGGGGGTGATGTGCGCGGTGGCATTACTAACTCTGCTTGTCCTCATCGGCTGTTTTGTGTTCAAGAACAAAGGCGGCAAGTATGCAGtgAAGGAAAAAGAGAACACTCCCGCTGATCCTGAAGCTCACCGCATGGGTGAAGAATCTCCCTGTGAGTACAGTGACAATGATGAGAAGCCGCTGAAGAGCAGCCAGCAATTGTTCCCAGACATCAAAGCGGATGATAGCAGCGAGGACAGCTCTGTGATGTCGGAGGACGAGGACTGCGAGTTCAACGAAGACGGCTCGTTCATCGGCGAGTACTCGGGGTACAAGCGCAGGGTGTCCAGGGAGGTGAACGGACAGGCTCCGGTGACGACTTAATGCTGGTTCAACCTTAGGAACTGTTTTTACAAAGAGAACGAGAAGTTTGTTTGTGAGATGTGCCATGAATGtgcctatgtttttttttaagagtttgcTTTTGAGTGAATGGCCACTTCTTTACAGTATTAATATGAAGGGTGATAGTTCCggtcaacataaaacattatgccatcatttactcgctGTACTGTTTCGATTGACTTCAAGGCGTTTAgtagaatgttcatgctgctctttttcttttttttacaattcaaatATACGGCTTTGCATAGTTCcaaaaaaggtcaaaaataaatatatctataccCTTGTGAAAAGAAGTACACTTTAGCATACTTTAAAGTACTTACTAtagaaaaatacagtttaaaagagTACTTACGTGCAAACTGACTGCAATGGTTTATAATGGACACTCTTTGCAATTAAATAAGATgtgttttaagtttaaatttatattaaataatatatatttaatatacatttaaataatttctgacCCACTTACCTTGTacgtgtttatatgtattttcataATTCTGTTTcctttgaaatatggttaaagtgtACTTTTCATTCatggtaaactaaaatataatgtatacattttttttctacttgtgTCAAAGTCTATTGCAATGTATTTgtaatgataaattaaatacatttaaaacaaacattaacgCACTGCAGTAAAAATTCAAACTACATGTGAATATACACACGCATCAATGGGTAAGTCATCttatcaaaatatgtatttctttaaagtatcacaaaaagttattaaaatagtaatttaaaaaactttacagtaaaactaaaatttaaaagctttacaaaagtgcacatttttaaaaagttgtgttctctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229923 lncRNA downstream 217398 5815311 ~ 5919163 (-) True G155254
XR_006247895.1 lncRNA downstream 473605 5654018 ~ 5662956 (-) True LOC122329299
TU229905 lncRNA downstream 588853 5525041 ~ 5547708 (-) True G155238
TU229897 lncRNA downstream 640087 5492731 ~ 5496474 (-) True LOC122329188
XR_006247896.1 lncRNA downstream 705037 5430546 ~ 5431524 (-) True LOC122329300
TU230003 lncRNA upstream 21480 6191097 ~ 6191320 (-) True G155308
TU230114 lncRNA upstream 179390 6349007 ~ 6351825 (-) True G155388
TU230159 lncRNA upstream 315037 6484654 ~ 6484915 (-) True G155413
TU230119 lncRNA upstream 315822 6485439 ~ 6488844 (-) True G155391
TU230121 lncRNA upstream 319007 6488624 ~ 6499749 (-) False G155391
XM_043224063.1 mRNA downstream 52262 6028904 ~ 6084299 (-) True cntn3a.1
XM_043225270.1 mRNA downstream 170136 5957165 ~ 5966425 (-) True edn3b
XM_043225324.1 mRNA downstream 186608 5944681 ~ 5949953 (-) True ttll9
XM_043225325.1 mRNA downstream 186615 5944681 ~ 5949946 (-) False ttll9
XM_043224102.1 mRNA downstream 196759 5937632 ~ 5939802 (-) False ppp1r3da
XM_043225147.1 mRNA upstream 146285 6315902 ~ 6322111 (-) True ppp4r2a
XM_043224351.1 mRNA upstream 200599 6370216 ~ 6414435 (-) False tns2a
XM_043224350.1 mRNA upstream 200599 6370216 ~ 6414434 (-) False tns2a
XM_043224349.1 mRNA upstream 200599 6370216 ~ 6414434 (-) True tns2a
XM_043225115.1 mRNA upstream 252595 6422212 ~ 6434975 (-) False eif4ba
TU229892 other downstream 656742 5477914 ~ 5479819 (-) False LOC122329286
TU229887 other downstream 681514 5454417 ~ 5455047 (-) True G155227
TU229703 other downstream 1302041 4831818 ~ 4834520 (-) False LOC122329181
XR_006247892.1 other downstream 1941563 4173914 ~ 4194998 (-) True LOC122329268
TU230261 other upstream 561234 6730851 ~ 6731886 (-) True G155489
TU230276 other upstream 596991 6766608 ~ 6822978 (-) False rps21
TU230273 other upstream 603961 6773578 ~ 6822978 (-) False rps21
TU230275 other upstream 603961 6773578 ~ 6822978 (-) False rps21
TU230277 other upstream 603961 6773578 ~ 6822978 (-) False rps21

Expression Profile