RNA id: XM_043225257.1


Basic Information

Item Value
RNA id XM_043225257.1
length 9947
RNA type mRNA
GC content 0.48
exon number 24
gene id camta1a
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 9215785 ~ 9516716 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCCGGTTGGACTCGCCTCTGCCTCGCCAGTCCCTTCTCGTGCTGCTGTCCTCTGCGTGAACGCGCGTGGTACCCAACGCTcgtgaagaggaggaggaggatgtgGCGCGCGGAGGGGAAATGGCTGCCGAAAACAAGCCGGAAGGACTGAAGAAAATCCGTAATCCGGATCGAATGTACAGATCAGCTGTGTGTTATTCGGCCCATGCTCCTCCTAAGAGTGTCAGTGATGACACAGAGACGAACAatgAACATggacatttgaaaatataccTGCCCAAAAAGCTGCTTGAATGTCTACCAAAATGCTCCACGTTGCCAAAAGAGAGACACAGGTGGAACACCAATGAGGAAATTGCAGCATACTTGATAACATTTGAAAAGCATGAAGAATGGTTGACAACATCCCCTAAAACAAGGCCACAGAATGGGTCGATGATCCTCTACAATAGGAAGAAGGTGAAGTACAGAAAGGACGGCTACTgctggaaaaaaaggaaagatggGAAGACCACGCGGGAGGATCACATGAAGCTCAAAGTACAAGGAGTGGAGTGTCTGTACGGCTGTTACGTCCACTCCTCCATCATCCCCACTTTCCACCGCAGGTGCTACTGGCTTTTACAGAACCCAGACATTGTCCTGGTCCACTACCTGAATGTGCCAGCTATCGAGGATTGTGGAAAGCCATGTGGGCCCATCCTGTGCTCCATCAATACAGACAAGAAAGAATGGGCCAAATGGACGAAGGAGGAACTCATTGGCCAGCTGAAACCCATGTTTCATGGCATCAAGTGGACTTGCAGCAATGGGAACAGCAGCTCTGGCTTCTCTGTGGAGCAGCTGGTGCAGCAGATACTGGACAGCCACCAGACCAAGCCTCCTCCCCGGACTCACAACTGCCTCTGCACTGGCACTCTGGGTGCTGGGAGCAGTGTGCATCATAAGTGTAACAGCGCCAAACACCGCATTATCTCTCCCAAAGTGGACCCCCGTTCGGGTGGTTACAGCAGCACCCACTCTGAGCTTCAGAATAATGATGTGTCTGAGGGCAAGACAGAACACAGCCACAGCAGCAAAAACAgtggaggagcaggaggaggaagCGTACGTGAAAAACGCAATGGCAAGGTTCATAAACCTGTGCTGCTTCACCAGAACAGCACTGAGGTCTCCTCTACCAATCAAGTGGAAGTGCCAGACACAACCCAGAATTCCCCTGTGTCCATCAGCAGCGGGCTGAATTCTGACCCTGACATGGCTGACAGCCCAGCGGTCACAGGCATGGGCCATGTTGCCTCTGTTATGAGCAGCCTATCCCAGAGTGTTTTTATGTCTGAGGTTACCGGGGATCCCGTCTATAGCATGTCGCCCACTGGAGGCCATAACACCCATATTATGGGCCCCGACGCTACCTCTCACAGCCTGGTCTTAGGAGTCACCTCTGACAGCCACAAGTTTGCCTTTCCAGGAAGCGCGAGTGCAGATACAGGTGGTCCCGGAGCAGATGGGCTGTCTATGCTCTCTGCCTCCGGCGTCTCTGAGGAGCTTGTCCTCTCCAACAGCCTAGACTCCAGCAGCATCAAAATCCCAGAAACCACCATGAACTTCGACCCCGACTGCTTCCTAAACAACCCGAAGCAGGGCCAGACATATGGGGGAAGTGGATTAAAGCAGGAAAATGGCACATCCAGTGCCTCATCCTCCTCAACAGCTAGCACCAATGGTTTGCAGCGCTCACCACCTATATCGGATTCAAACTACGGCTTCAGTTCTGCACTGGTGAAGAACATCAAGACTGAGGACACCTCCTTCGAGCAACAGCTGGCCAAAGAAGGGAACTACCAAGTGGGGCCAGTTGTAAGCTGTAGCGTTTCCAGCGGCTCAGGCTCCCAGAACTCACTCACCTTGACCCCTGCTGCCTCTCTGCTTCCCTCTGGAGGGGGCCTGAGTCCAAGCACCACCCTGGAGCAGATGGATTTCAGTGCCATCGATGCAAAACAGGACTACTCTGCCGGTGCCACAGCAGTAAGTTACAGCCAGGCAATGAACAACTTAGCTCACCAGAACCGATCTCCAAGCTTTTTTCTTCAAGAAGCACCACAAACAGCCCAGAACCAGCAAGGCCGGCAGAGCTCCAGCCAGAAGGGCCACCTTCTGGAGCATAATACCACTGATGGGGCCTACATGGGTCTGCAGGTTGTAAAGACAGAATCACCTGGTAGTAACGGTCATCTTCACCACCATCACACCCACCAAGGCCAACATAGACCCAACTGCAATGGAGGCTCACCCACTGAGGGCCAAGGACAGGGCTCACTACAACTCCTTCAGTACCAAGGAGGTTTCCCAGGCCTTGGTCCAGAGCATGAGGAAGTAGTCAGCATGGATCAAAACCGAAGTGTTGGGTCCAGTCAGTCTGGGGCAACTGAGAATGGGACAGATGGTTTACTAAAGTCTGGGGATCATCTACAAGCCTGCGGAGGAGGAAGCGGAGAGAGTGGAGGAGCAGATCACTTCATGCAGCAGAGCTCTGAGAACGGAGCCGGAGCTGAGGCCGTGGCTTTGAGGAATGGAAATACCACAAGTGGGCCCAACAACGGTTCACAACAGCAACTCCAGCCGCTGCTTCAGGGAGCTAATTTGGTTCAGGGGCTATACAACACCCACCATGGGCTTAGCGGGGGCGGAGCTAATAGTGGAGGAGGCACGGGCATGGAAATCAGCTTGGATCATTTCGATATCTCTTTTGGAAACCAGTTTTCTGACCTCATCAGTGACTTCATCTCAGTTGACAGCGGAGCCACAGCGGTAGGGGCTACAGGGACGTTATACACCCACCAGTTGGTGGCCCCGCATGGGTCGGATGGAACGGCCTCCTCAGGTGGGAACCAACAGCAAGGTCAAGAGGATGGCACCAACAGGGCAACTGGATATAACCCCTCGGAGCTTTGCCTCCAGTCATGCTGTAGCCCCCAGTCTTTAGGTGGAGGTGCTGGTGCAGGTGCTGGCGGAGGTTCAGGAGAGGCAGGCTCGCTGGCCTACATGCACGTCGCTGAAGTAGTGTCAGCAGCAGTGGCCCAAGGCACTCTGGGAATGTTGCAGGCCACTGGGCGACTTTTCATGGTCACAGACTACTCTCCAGAGTGGTCCTACCCAGAGGGTGGTGTGAAGGTCTTAATCACTGGGCCATGGCAAGAAGACAGCAGCAGCTACACCTGCTTGTTTGATCAGATCTCTGTCCCTGCCTCCCTCATCCAGCCCGGAGTTTTACGTTGCTACTGTCCCGCCCATGACACAGGCTTGGTGACTCTGCAGGTGGCTGTCAGTAATCAAATCATCTCTAACTCGGTTGTGTTTGAGTATAAAGCCCGTGCACTGCCCTCCCTACCTTCATCCCAACATGACTGGCTGTCACTTGACGATAACCAGTTCAGAATGTCCATCCTGGAGCGGCTGGAACAGATGGAGCGCAGGATGGCTGAGATGGCCGGTCAGCAGCAGCAGAGCAGCGGAGGAACAGCAGGGACCGGAGggggaggaggtggaggaaaTGGAGGCACTAATAGCCAGTCTCAGTGTATCTCGGGACAAGCAGGAAGCTCTTTTGAGAGCCGTGTGGTTGTTGTTTGTGAGAAGATGATGAACAGGGCCTGCTGGGCCAAATCTAAACATTTGATTCACTCCAAGACCTTCCGGGGCATGACCTTGCTACACCTTGCTGCAGGCCAAGGTTACGCCACCCTTATCCAGACTCTCATCAAATGGCGCACAAAGCATGCAGACAGCATTGATCTGGAACTTGAGGTGGACCCTCTCAACGTGGACCATTTCTCTTGTACTCCACTGaTGTGGGCTTGTGCACTGGGTCACCTAGAGGCAGCTGTGGTCTTGTACAAGTGGGATCGGAGAGCACTGGCCATCCCAGACTCACTAGGGCGCCTGCCCCTTTCCATCGCCCGCTCCCGTGGCCACACCAAGCTGGCAGAGTGTCTAGAGCAGCTCCAGAGagaggagcagcagcagcagcagaccCCGTCCTCTTTACCTCCAACCTCTAGCATGTCTTTCTCTCCCAACCCCGACATCCCCACCTCCAACAGCTGGATGGTCAGCTGGAGCAGTGACAGTATGGTGGCCCCCAGCGGACAGAACACTGGTACAGCCACTACTACTACAACCCCTTGCACCAACCAGAACCCTGaTTTGAGAAGACCGCGATCAGAGCCCTCCAGCTACTACAGCAACGAGTGCCAGCGGGACCTCCCCCTtgccaaaaaacacaaacccaaCCCTGAGCTTGTGCAAGCACAGCTGGATAAGCCAATGTCAGTTCCCTTGAACATGGAGCAGCAGACACATAAACTGTCAACCAGCCCTAAGACCCTTCCTTCCACTCCGTCCAGCCCAGATAAGAGCGTCTCAGAGGAGGGTTTGGGGACAGTTGGAATCCCGCAAGCCAAGATGGCTTCTTACCGCGGAGGGCATAAATGGGCCACTAGAGAAGTGCTCAGGAAAGGGGGCATCAGTGGGGTAGGAAAGGAGAAGTTGGCCAGCCGGTTACGACAGCGTGGCGAATCCCTCAGCATGCTGGGAATGGTGGAGAGAGAAATGGTAGACACTGAGATACTTTCTTACAAGGAGGATCTAGAGAACCAGGACTGCCTCTCGCACATGGAGGACCTGCAGGCGAATATGATGAGCCTGGCAGAACACATCATTGAGGCCACTCCAGAGCGTATCAAGCGGGAACATTTTCCAACCGTGGAGTCTGTTCCTTTGGACAACAGTGGGCTCACCAACACCATGAGCTGGCTCGCCAGTTACCTGGGAGACCTGGAACACCTGCCCAGCATCATCCACTTGAGTCCCATATACATTGAACCCATGACCCCTCCTTCCAACCCTAGCCTGAGCCCGGGTAACTCACCCTTGCGTGAGGGCCAGTTTGAGAAGCCGACCTTGCCTGCTCCTTCCGAGTGGAGTGAGTTTCTCCGGGCCTCCAACAGCAAAGTGGAGAGAGAGCTAGCCCAGCTCACGCTGTCGGACCCCGAGCAGAGGGAGCTCTACGAAGCCGCACGGCTGGTGCAGACCGCTTTCCGAAAGTACAAGGGACGCCCACTGCGCGAGCAACAGGAAGTAGCCACCACTGTCATTCAGCGCTGTTACAGGAAGTACAAGCAGCTAACATGGATAGCCTTGAAGtATGCACTTTATAAGAAGATGACGCAGGCCGCCATCCTTATCCAGAGTAAGTTCCGCAGCTACCACGAGCAGAAGAAGTTCCAGCAGAGCCGGCGGGCGGCCGTGCTGATCCAGCAGTGCTACCGCAGCTACAGAGAGTTCGGCCGGCTGAGGCCTCACCGCAGAGCAGCCACCGCCACATTGGTCCAGCACAAACTCAGCAGTCTTCTCACAAAGAGGCAGGATCAGGCCGCCCGCAAGATCATGAGGTTCCTCCGCCGCTGCCGCCACAGCCCCTTGATGGACCATAGACTATTCAAGCGGAGTGAGAGAATTGAGAAAGGCCAGGGAACATGAGAGCGTCCAGAAGAGCCCCCTCACAATGTGACATTACTCTCCAGACTCTtcctttcagtttttctgtttcaACCAGAGACGTTttacaagaggaaaaaaaatagcaagaaCACTGCAACTCTTACTACTATTGTATGACTGATACTTCGGCTACTAAACAACTGCGTTTTTTCATATCTCTTTATTCCTTCTATGTTTCTTTTATGAAGGAAAGAGCCAACTGCTGTGGATCAAAAACTCTAAGGACGTTGTTTTAGGAGGAACAACATTTGCTTCATGgcattttttgcactttttaatggattgatttgtcattttggatgagcataaaaatgttttgtttgaaaaaggaaaaaaaggatgGATGGAAGTCCTGCTCTTCAGTGACTTGTAAAGAGAAGATAAATAAAGCGAGGAAAATAGAGAGAAGATGACAAAATATGGAGTCGACACAGAAACATGGCCGGACCTGTTCCGAGTGTATTTTCAAAAGAAGTGTTTAGTGGGTAAAATTGTTAccaaaaatactgaataattcATGAATAAGTTTTTGTACATGCTTTACTCTACAACCAGACAAATTCGTCAGAAACTTCTTCCAGTCTGTCCCTTACGCTCGCCAGTCCTCTCTTAGCTACAAGGGGACTGGGTTGCTAATGAATGTAAGAGGGAAACTAGCAGGCTTGGGGTGACGTGTCAAATGCTGATGTCGATCTGCTAACAAGATGTGTGAAAAACACAGGTATACATACAGTTTTAACCAACAGCTATTTTCGAATTGATGATGTTCTGCCAGTTCAAAGTTAGCGAGACATCGCTCCAGGCAGACCTTGTCTTATGCATGCTTGAAACTAGGCCGcagtcttttcattattttgttttaaactcCATGCATGAATGTACTGGAGACACCAAATGCCATCACCTCTGCCCATCATTTACTATTGGCAAGTTCgtaaagttttcttttgttaattcCATGTTAAACGGTCACTTTGTTCAGTTGAATCTCAACGTCAGAGGTTTTCTAAGCTCTTTAAAGGAAAATGACATGCATTGCCTTGATACCTTTGACATACTTTGAAGGGTCTCCACGCCTGGGGTTAGACAAATCCATATTTTTGACAATTGAGCGGTTCCTGTACATAAAGAGGGTTGCCGGTACgcaaagtaaaacatttatctaAGCGGGAttgtattttagaaatatattattttactcatTGAAAGGGATCAAAACAGATAAGCGTcaaaatctgaatatttgtATAGTTTTGTTTGAATGCCTAAGAAGTATGGTTGTAACGTTTGTACATAGTGTAAATACCTGGGATAAAGTCAAGCTACTGTATGTGCatgacaaaaatgaacaaagatacaaaaaaagagTTCAAAAGCATTAGTGGCTATGCTCTGTAAAATTATTTCACTAtaagagtattttattttactttgaatgTTCTTGAGAAGAACATTTTGCTAAAGCATGACTTTCCtgcaattatgaaaaatactgtatttaagaGGTAGGAGAAAGGCAAAATGATCATTAGGTTATGTTtacatctgtttgtttgttttttctgggCTACCAAGAATCTTTTTGCCAATGGTGCCAAGTAATGTGAATGCTACTGCTTAAAGGAAGTAAATCATTGCTGAACAGATAATCACCTGGTAAACGCGATCACATTCACTTGCATTCAGCAGCATTACCGTCAACACAGTCGGACAAGGATGATGGTGAATTCAGGAAGGATCTTTAAGTGTATCACATATCTAATATGGTTTCTTTGTACTGTACGGTTTTGTGTTTCATAAGTCTGGATACTTTTGTATTATGTCATTGAAATTATGTaaggtgtgattttttttttttctgttatgaaTGCAGGTAGTGGAGCTAACAGCAGCGTTATGCAGCTTTAAGTGTAACACTCTGATGGTCTAATTCAACAcgatgtgcaaaaaaaaaaaccccgtgtgaagtaaaaagctgcCTGAAATCCACACTGCTCCACTGATTGAAAGATTGGGTTCCCTGTTATGCATTCAAACGGGATTCTTTTGGTGCTAAACGTTGGCGTCAAGGGCCAGATAGACCTCCAAAGATCAGTCCGTTTCGCCGGTGTTGCAGTGACGTTACTTTTAACAGCAGGTGTCGTTGTGGCTTTTGAAAAGAAGAAAGTATACGAAAGCGCTCTTGAAAATGAGTTCTAATGCACTAAAAATGTGTAGATTTCGGTTTCCCCCTCATGTCGAAATgctttttgtcatgttttgcaTTTGCGTCTCTGTTCAAGAGAatgatatgtaaatgttttcttcaGAGTGCTTATGTTGGAAGTGCCTGATCATATTCTAAATCCAGCGAGCCGTGTCAGTCTGCATGTGAGGTTTGCGATGGACTGTCATTAGCGAGAAGTGAATTATAGACTGTccgttttattttctgttttgtccatgctttatttcattttaacgcACCAGGAATTTATGGCTTCGTCATAACTCACGTCCTCTATTGGAACTGCCAGATGAACCGGCGACGAGGACTGCAGATTCAGTCCGGCTGGTTCTTGCCTTGCATTCATCATTCCGGTAGCAGTTTAGGTTGTCAGCTGATGCACTGCGGTGGCAACTTGAGTCTTATTATGCTTGCATGGGTAACATAGATAACCGGGTGGCTGAAACAGCACCCAAAGCATGCTTATTTTTGTAGATTTGGTAGTCAGGTAGACTTGTCGAAGAAATACTGTTCTGTAAAGCAGCTGGTTTTATGGGTTGCAGAACTCGAAACAGACCGAGGGCTTTGAAACGTaactttacaaaacaaaaagtcaaaacaGCTGGCAAATTGTCAGTACTACTCATATTTACAGGGGCagcatgaatattttttattattattcaaatagaATTTGGCTTCCTGTTTCGTTTTCGAATTCAGTTTCACTCCACTTTCCATTCACATTCCCATTGTTTTCAACTAGCTACTCCACCAACAAAAACAGGTTAAAAAAACGTGTGTACCTCATACGAAAACACGCGCCACAGAACTGTGTCCATATCCGCGTTAAAGTGTCCATGGCACTAGTGCAGTTGAAACCTCGGGTGTGAATCTGACGGGTTCACTTTTGTATCTTAACTCAGGTGCCAAACTGGAGAAAAGGAGGAAACAGAGCAGGTCACTTGAGCATTAGCTGCTGCTTATTGGGAAACGAGCCAGACTGTCCTGATCAAATTACTGTGATTCTGAACATGTCATGCTGTtcacctttttttaatcaactatGTGAGCTGAGTTGGCGTACCCTAGGTTTGTCGAAAGCGCGGCACTGACTGGTGTTGTATAAGAGTGATTAAGCCCGTTGCAATGGAGCAGGTCTACGAATGCTTGTGTAAATACGCATGGATGTTTTGGTTCAATGCAGCTTCTCTGGATCCTTTAGTCACTGTATAAACACACTGCCGTGGATATACTGTATCACAATAATGAAAAAGTGCTGCTCAGATCGATTCatttacatcatcatcatcactttaTTCTAGTCGTAGATAGACATTTCCagacatttaaaagaatagctGTAGTTTATAAACACCAGACAGTAACCTCATCTGGTCGCATACGGGTTCATTTTGACGATTCTGCTTTAGCTTTAACGGTATCACAGCTCAGCCCACAGAAGATACCTCATCAGTTTTGTTTGTCGCATCAACAACTTCGAACAGAGACTGCCTTTCCTGCGCATTCATTCTTTAGACACGGGAGAACAGGGCCCTAGGAAACATCCCACCACTCATGGACACAGAGCAATAAGCAATTCCTGAAGTGGAGACCTGTAGACCTAACGGAGACAGCGATCTGTTGGACACACGTAGCTGACTTACTCTTATGCAAATGCCAGTATTGTGAGATTAGAATGCAGTAGTTTAAGGACAGTGCTTATATGACACCCTTCATGGAGCTGCACGTTTTCATCCCTTTCAAACCCAGAAAATAGCGGCCCTGCCTTTATTACAAGCTACACTTGGGGCTCTCTACACTTTGCATGTTAAACTAGTGTTAGATCTActtttcctctcctctctagctgtctttctctgtgtctTTCCCGATTATGTAGCCCTCTCCTTTCCTGATGACCccgatttgtttttttttggttttagtttcttcttttctaaatgtcttttatttttcttccttccCCCTGGTTTgagcaatttatttttgtaattgtgcATGTTAAAGAGTCACTGAATCGATGGATATGTTAAAAAAGAGAATTCAGCTGCTGAAGCcatgcaaaatgttttgaattgcCCTTAAAATATGAAAGATGTTTTCTGAATGCTTTATATTCTCTctgctgtaaaataataaaaggggaaaaactTAA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231000 lncRNA downstream 26888 9188513 ~ 9188897 (-) True G155979
TU230983 lncRNA downstream 62283 9153080 ~ 9153502 (-) True G155968
TU230977 lncRNA downstream 118522 9079533 ~ 9097263 (-) False ctnnbip1
XR_006247890.1 lncRNA downstream 142841 9070384 ~ 9072944 (-) False LOC122329247
TU231104 lncRNA upstream 85246 9601962 ~ 9602477 (-) True G156051
TU231107 lncRNA upstream 90772 9607488 ~ 9607948 (-) True G156054
TU231109 lncRNA upstream 95534 9612250 ~ 9612596 (-) True G156056
TU231365 lncRNA upstream 161545 9678261 ~ 9815494 (-) True G156235
TU231378 lncRNA upstream 265392 9782108 ~ 9831125 (-) True G156245
XM_043224458.1 mRNA downstream 5821 9195310 ~ 9209964 (-) True ccdc187
XM_043224460.1 mRNA downstream 5821 9196861 ~ 9209964 (-) False ccdc187
XM_043224461.1 mRNA downstream 5823 9195310 ~ 9209962 (-) False ccdc187
XM_043224459.1 mRNA downstream 8186 9195310 ~ 9207599 (-) False ccdc187
XM_043224052.1 mRNA downstream 73465 9135415 ~ 9142320 (-) True slc25a33
XM_043225411.1 mRNA upstream 9876 9526592 ~ 9528135 (-) False thap3
XM_043225412.1 mRNA upstream 9876 9526592 ~ 9528130 (-) True thap3
XM_043224327.1 mRNA upstream 26770 9543486 ~ 9548342 (-) True pcmtd2a
XM_043224328.1 mRNA upstream 26770 9543486 ~ 9548339 (-) False pcmtd2a
XM_043223962.1 mRNA upstream 32408 9549124 ~ 9562123 (-) True myt1a
XR_006247818.1 other downstream 5821 9196227 ~ 9209964 (-) False ccdc187
TU230970 other downstream 289175 8921564 ~ 8926610 (-) True sst6
XR_006247823.1 other downstream 296060 8913062 ~ 8919725 (-) False c23h1orf127
XR_006247824.1 other downstream 296060 8913063 ~ 8919725 (-) False c23h1orf127
TU230789 other downstream 587394 8625758 ~ 8628391 (-) True G155827
TU231373 other upstream 285069 9801785 ~ 9808232 (-) False hmgn3
TU231374 other upstream 285069 9801785 ~ 9808369 (-) True hmgn3
TU231375 other upstream 315412 9832128 ~ 9833633 (-) False zgc:153284
TU231376 other upstream 315412 9832128 ~ 9833682 (-) False zgc:153284
TU231501 other upstream 713830 10230546 ~ 10231919 (-) False ankrd52a

Expression Profile