RNA id: XM_043225271.1


Basic Information

Item Value
RNA id XM_043225271.1
length 809
RNA type mRNA
GC content 0.59
exon number 4
gene id mipb
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 4288270 ~ 4289469 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGATCTCGTGAAGCATGATGTGGGAGTTCCGCTCTATGATGTTCTGGCGGGCGGTGTTCGCCGAGTTCTTCGGCACCATGTTCTTCGTCTTCTTCGGGATGGGCGCAGCGCTGCGCTGGACCTCGGGGCCGTACCACGTCTTCCACACCGCCCTCTGCTTCGGTTTCGCGGCCGCCACGCTCATCCAGTCCATCGGCCACATCAGCGGAGGACACATCAACCCGGCCGTCACCTTCGCCTACTTAGTCGGCTCTCAGATGTCCTTTTTCCGAGCTTTCTTCTACATCTGCGCTCAGTGCATGGGGGCCATGGCAGGAGCCGCGGCCCTGTACGGAGTTACACCCAACAACATGAGAGGCACACTGGCACTTAACACGCTGCAGCCCGGCATGAGTCTCGGCATGGCGACTACAGTGGAGGTGTTTCTTACCATGCAGTTGGTGGTCTGCGTTTTCGCCGTCACAGACGAGAGACGAAACGGACGCTTGGGGTCAGCCGCTCTGTCTATTGGCTTCTCTATCACCATGGGCCACCTGATGGGGATGTACTACACCGGAGCCGGCATGAACCCGGCGAGATCTTTCGCTCCTGCGGTTATCATGAGGAATTTCATCAACCACTGGGTGTACTGGGTGGGGCCTATGATTGGTGGCGCTATGGGTGCCATCCTGTACGATTTCATGCTGTTTCCCCGTATGCGGGGCTTCTCCGAGCGGCTAGCCACTCTCAAGGGCAGCCGACCCCCGGGGGCCGAGAACCAGCAAGAGACAATCGGGGAGACCATCGAGCTGAAGACTCAGACCCTATAA

Function

GO:

id name namespace
GO:0002088 lens development in camera-type eye biological_process
GO:0055085 transmembrane transport biological_process
GO:0006833 water transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015250 water channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229355 lncRNA downstream 2713 4283769 ~ 4285557 (-) True G154895
XR_006247789.1 lncRNA downstream 86130 4200644 ~ 4202140 (-) True LOC122328378
TU229337 lncRNA downstream 86132 4200882 ~ 4202138 (-) False LOC122328378
TU229221 lncRNA downstream 222741 4063965 ~ 4065529 (-) True G154787
TU229223 lncRNA downstream 223390 4063523 ~ 4064880 (-) True G154789
TU229420 lncRNA upstream 257414 4546883 ~ 4550218 (-) True G154933
TU229643 lncRNA upstream 390514 4679983 ~ 4680279 (-) True G155085
TU229677 lncRNA upstream 418196 4707665 ~ 4710337 (-) True G155092
TU229678 lncRNA upstream 423220 4712689 ~ 4713082 (-) True G155093
TU229682 lncRNA upstream 438385 4727854 ~ 4731140 (-) True G155096
XM_043224438.1 mRNA downstream 41132 4209314 ~ 4247138 (-) True bmp7b
XM_043225478.1 mRNA downstream 93274 4173914 ~ 4194996 (-) False LOC122329268
XM_043224266.1 mRNA upstream 2764 4292233 ~ 4298594 (-) True LOC122328525
XM_043224178.1 mRNA upstream 14086 4303555 ~ 4327917 (-) False baz2a
XM_043224177.1 mRNA upstream 14086 4303555 ~ 4327870 (-) False baz2a
XM_043224179.1 mRNA upstream 14086 4303555 ~ 4325641 (-) False baz2a
XM_043224175.1 mRNA upstream 14086 4303555 ~ 4325637 (-) True baz2a
XR_006247892.1 other downstream 93272 4173914 ~ 4194998 (-) True LOC122329268
XR_006247893.1 other downstream 93274 4173914 ~ 4194996 (-) False LOC122329268
XR_006247897.1 other downstream 382378 3894966 ~ 3905892 (-) False lad1
XR_006247838.1 other downstream 842306 3436779 ~ 3445964 (-) False LOC122328836
TU228728 other downstream 1336642 2942238 ~ 2951628 (-) False G154445
TU229703 other upstream 542349 4831818 ~ 4834520 (-) False LOC122329181
TU229887 other upstream 1164948 5454417 ~ 5455047 (-) True G155227
TU229892 other upstream 1188445 5477914 ~ 5479819 (-) False LOC122329286
TU230261 other upstream 2441382 6730851 ~ 6731886 (-) True G155489
TU230276 other upstream 2477139 6766608 ~ 6822978 (-) False rps21

Expression Profile