RNA id: XM_043225275.1


Basic Information

Item Value
RNA id XM_043225275.1
length 4505
RNA type mRNA
GC content 0.45
exon number 11
gene id atf7a
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 15906598 ~ 15928803 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCGTCTTCTCTTCCACAGTTATATTGCAAAGCCTTTGCAAAGATGGGGGACGACAAGCCTTTTGTGTGCAGTGCTCCTGGCTGTGGGCAGAGGTTTACTAATGAGGATCACCTGGCTGtccataaacacaaacatgaaatGACGCTGAAGTTTGGACCGGCTAGAACTGACTCAGTCATCATTGCAGACCAGACGCCGACTCCCACTCGTTTCCTGAAAAACTGTGAAGAGGTGGGCTTGTTCAATGAGCTGGCCAGCTCGTTCGAGCAGGAGTTCCCTAAGGCCCAGGAAGATGAGGACAAGAAGGCCAAGAATCCGTTGCCTGCTCCTAATTCAGGAGCGCTTGACATGAGTTTGCAGACGCCTTCAGACGTTAAGGTGAAGGAGGAGGACCCTGTGGAGGTGGACTCTTCTCCGCCTGCCAGCCCTGACTCCATCTCCAGCATGtcagacagcagcagagagCCTGTAAGCAGAGGAAAGGATTCTCCTCCAAAGCATGCCATCAGTTCGGCTCCCACCCCTGCCATAGTGCGTCCTGGCTCCCTCCCGCTGCACCTGGGTTATGACGGCCTGCAGCCCACCATGCCCTCCCCTACCTCCGTCATCACGCACACCCCACCATCCAACCGTACGCTGGGaTCTCCCACAGTGCCGTACCCAATGATGATGCTCCCCAACGGTCAAACAGTTCCTGTGCTTCCAGGTCCTATGCAGATGCCCTCTGTAATATCTCTGGCAAGGCCCCTGTGCATGGTGCCCAACATTCCAGGAATTCCCGGCCCTCCACTAGGAGGCAGCAGCAGCGGCTCGTCTTCACCCTCAGGCTATAACCCCCACAATGAGGCAAAGATGAGGTTGAAGGCAGCATTATCTCAGCAGATGCCCACAGCTCAGGGTTGTCTTGGTGTGGCGATGGGGTCCAGTGCGATGGTCCCTCAGAGAGCGGAGCAAAGCCAGCTGCTGGTCCAGCATCCAGACGCCCCGTCCCCTGCTCAGCCGCAGGTGTCACCCGCTCAGCCCACCGGAGGTCGCAGGCGGAGGACGGCTGATGACGACCCCGATGAGAGGAGGCAGCGCTTCTTGGAGCGGAACCGGGCAGCAGCTTCTCGTTGCAGACAGAAGCGCAAGATATGGGTCAGCTCTCTGGAGAAGAAGGCCGAAGAACTCACCTCCATCAACGTCTCGCTGTCGAACGAGGTGTCTCACCTGCGAAACGAAGTTGCTCATCTGAAGCAGTTGCTGTTAGCCCATAAAGACTGTCCCGTCACCAACCTCCAAAAGAAAGCCGTCTACTTGGGCGAGGAGCACATGAAAGAGTCGTCTGAGCCCACGGGCTCCCCGGCACCGGTCATTCAGCACAGCTCTCTGGCCCCCAGCCCCTCGTCCGCGGTAGGCCCCAACGGCCTGAACTCCCGTGCCGCGGCAGAGGCGGTGGCCATGTCGGTGCTGGCGGGGATGGGCAGCCAGAGAGGGGAGAGCGGTGGGCCGTCACACGTCATTATGGCCACACAGTCCCACCCATCCAGCAGATGATGAGAGCAGGTAAACAGTCTGCCTGGGACTCTCCGCATCCCAGGAGAGGGGGGCAGATCTGTGAGAGGAGAGCGCCGGTTCCCTCTCACGCCATCACGCTCTGGCCTGGAGCTCAGCTGCATTCTGGGAATGAAACTGGGACTATGTACACATAtagagaaagacagaaggagATTGTCGTTCACTATGCCATAGACTACGGGGGCTGGACTCCAAACCACGCTCTCATTTGCATCCTCTGTAACTCCTGCTCTTTCCTTCAacttcctcctgctcctccacTGGCTGTAGGACTGCAAAGCACTTCCTGTCATCAAACGTATCCCCACAGACACACGCTGCAATACAGACATCGTTTGAACGGTGACTGCGCACTCTGTGCATGTCACACATGCAGGCTGCGTCTCAGAGTTGCAACGATGCAatactttatatattcatatatatatatatatgtgtgtgtatcagtaAGTGTGTGCTTGAGAGAAACATGATGCTTTAATGTTCTGTAGGATCTTCTATAGGAGGTTTTTAGTTTTCAGGTGGTCAACCCCTCTCATCTGACCCTCGCTCATCTTACCTCATTTTTAACCTGTTATATACGTTTATAATCGtcgtgtgcatgtgtgcttcTCGTGTGGGTGTACAGTGATGTACAATGGAAAATAGCAGTTTGTGAAGGACTGATACACTAAGACTGCCTTGTTAGCATGCAAACTTTTTTGgctatatataaactgtattgTATTGAAACATTGCGCTCAGTTCGGGCTATGGAACCTCATAGTTTGGTCCTATCATTGTTTTCTTGTGTACGACAAACTCAGAAACGACAAACAGCATACTGTCCGAGGTCATTACGTATGATCCTTTTTACACCCGAACCCTTGCCTtgaaaaatcaatatatttactgttttaaacTATGCCATTTTCTTTCCCTGTGATCacagtgttttaaatgcagctttagaTTGAGTTATTTTGGCCATTGCGAGTTCTCCTAAagtagtctgtttttttttttttgccctgtctttttttaatttttttattagtgattGTCTATCCCTGCTGCTGTGTTCATATGGAAACCCATTTCTGCTACATAAGAGGGAAAAACATAATTAGATAAAATGTTatctaatattattcttattagaTAGCAAagtaattatgagataaaaacatcaagagTATGATGTACTAAGTATGACGTGCATaattgtcaaataaaaagtagaaaatacaacataaatGTCATGATAATGGTGTGAAAAGTCATAACATAGATGGTCAAAATTGTgccataaaaattaaaattatgaaaaaatacattttgaaattgagatttgttttcttttattccataaTAATGACTTTAGTAATTCATTCAAGTAAAAATTGACCCCCAAAAAGGATAAAACGTCATAATTATATCGGtaatcatgtatatatatttttttttacatgttgcaGAAATTGGCTTCTATTGTACTCAATATCCAGAAATACAGCCCTAGTGCCTCCCGTTCAGTCCTCTTCACGATTGTTAAAGTTGATATCTTGTAACACTATTTGTTTCTCTGGTTGCTTATCAACTCATGAACGTGCACGATCCCTTATAAACAGTTAGAAGAGATGAGGATTCTGCCTTATTAATCACACGAGTGCCTCTTTTTTGGTCAACCTCATGCCGTGTCGCCGAGCCGACTGGTCACCTGGCATATTCAGGCATCTGTACCATCAGTTATGCCTTTAATAACAGCCAGAGAGCACTGCCCTTAATTGTACGCATAATCTATACTGCCACCTGGATGTAATAGGGTGCTATTACATGTAACTAGAACGGCTGCAGGGAACAAAGAGTGTCCAATTCTACTGTTGTTTGAATGCTGAGAAGTTTATCCCAAGCACATGGACTTTTTACGCCATATcagacactttaaaaaaacataaggCAGCATATAAACAAGGGACTAAGATGTACTGTTGTTGCTCAATGTAACTTGAACTTTCATTTTCTGATGTTATTTGCAGTGCGTAATGCTGCATTAATGCAGTGTCAGTCCAAAATTCACATAGGCCTGTCCAAATGCACTAACTAACATTTTGGGttcgttttttttccagtttggtGTCTCGGAGATTGTCAGCTACTCTTTCAAATAGCGTATCACGGTTACCACTTAACCCATATCTCACAAATAACTCCTGGTTTGAGTGTTGACCCTGGCTTTTCTGTTATATTATTTGCTGGCACTGTAGTCATTCAGCCAAACCCGTATAGAGGATTGTTGATCTGAAATGAGCAGAATAGAGAATTTTTAGCTCAACTGGCACTTTTTccaagatttcatttttttattgtgcgcTGCCAGGATTATAGAAATGACCTATTATAAtaaatcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgttgtaAGACtgaaaagtaaatttttttttttttatagactttcttttttcgttctatttttgttgttttaacactttgtactcaaatatttgtaggtatttttatttgtgtagatTAATAAGAATGCCTGTTCGATTGCCCCCATTTTGACTGATAATCACTTTAAAGTTGTAACAGATATCCGATGGAATTAATGATCCATAATTCCAGCATGATgcacaattaatttattatggaATTAGTTAACGCAAGGCAAATTCAATGCAGTTCCCCTGAGATAGATCGAACCaaacaagtcatttttgaaTAGGATGATCTTAGGCTAAAGAAAAAGgatattgtataaaatgttttaagtgtATGTCTTTTATGGGAAATAACCTCACTCCAAGTTGGACTGATAGTTTTTGGAATTGTCCTTGTTATGTACATATGTGTaccatatatatttactatttttcatgcatgttgAAGTGAAATACTCTGAACACAGTGCTGCGGttttgattaaacaaaaaaacaaaa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234328 lncRNA downstream 93671 15812281 ~ 15812927 (-) True G158208
TU234308 lncRNA downstream 117267 15728154 ~ 15789331 (-) True G158198
XR_006247888.1 lncRNA downstream 189354 15699771 ~ 15717244 (-) False LOC122329227
XR_006247887.1 lncRNA downstream 189354 15699771 ~ 15717244 (-) False LOC122329227
TU234287 lncRNA downstream 224726 15680886 ~ 15681872 (-) True G158188
TU234357 lncRNA upstream 44160 15964753 ~ 15965763 (-) True G158227
TU234368 lncRNA upstream 87513 16008106 ~ 16008915 (-) False G158231
TU234426 lncRNA upstream 181032 16101625 ~ 16102214 (-) True G158282
TU234428 lncRNA upstream 197288 16117881 ~ 16118214 (-) True G158284
TU234492 lncRNA upstream 326423 16247016 ~ 16247293 (-) True G158333
XM_043225016.1 mRNA downstream 629 15868340 ~ 15905969 (-) False dip2ba
XM_043225014.1 mRNA downstream 629 15868340 ~ 15905969 (-) False dip2ba
XM_043225015.1 mRNA downstream 629 15868340 ~ 15905969 (-) False dip2ba
XM_043225013.1 mRNA downstream 629 15868340 ~ 15905969 (-) True dip2ba
XM_043225010.1 mRNA downstream 46328 15814709 ~ 15860270 (-) True scn8aa
XM_043224743.1 mRNA upstream 9280 15929873 ~ 15934325 (-) False asb8
XM_043224742.1 mRNA upstream 9280 15929873 ~ 15934324 (-) True asb8
XM_043224740.1 mRNA upstream 14760 15935353 ~ 15948063 (-) False LOC122328789
XM_043224741.1 mRNA upstream 14760 15935353 ~ 15948062 (-) False LOC122328789
XM_043224739.1 mRNA upstream 14760 15935353 ~ 15948062 (-) True LOC122328789
TU234273 other downstream 189348 15699269 ~ 15717250 (-) False LOC122329227
TU234274 other downstream 189348 15699269 ~ 15717250 (-) False LOC122329227
XR_006247853.1 other downstream 432221 15347417 ~ 15474377 (-) False magi3a
TU233895 other downstream 1317005 14581094 ~ 14589593 (-) True fitm2
TU233846 other downstream 1575814 14326966 ~ 14330784 (-) True G157909
TU234366 other upstream 87513 16008106 ~ 16008915 (-) True G158231
TU234433 other upstream 223240 16143833 ~ 16169834 (-) True G158288
TU234490 other upstream 320217 16240810 ~ 16243395 (-) True tac3a
TU234495 other upstream 437059 16357652 ~ 16358705 (-) False G158336
TU234864 other upstream 1256059 17176652 ~ 17179779 (-) False slc48a1a

Expression Profile