RNA id: XM_043225279.1


Basic Information

Item Value
RNA id XM_043225279.1
length 1927
RNA type mRNA
GC content 0.48
exon number 13
gene id pgd
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 8927503 ~ 8933579 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTCATTGGGAGTTGAAGTAGTTCTGCTGCTCGGGCCGTGAATGAGGAAGTTCAGCAGAGACGGTGCTGCAGTACTCAATACCCTGATTCAAAGTGTCATTTTAAGACGGAACAAACCTTTAACCATGGCTCAAGCTGATATTGCTCTCATTGGTCTGGCCGTGATGGGTCAGAATCTGATCCTGAACATGAATGACCACGGGTTTGTGGTCTGCGCGTTCAACAGGACAGTGTCTAAGGTCCATGACTTTTTAAACAATGAAGCCAAAGGCACTAAGGTGATCGGGGCAGAGTCCCTTGAAGACATGGTGTCTAAACTCAAAAAACCTCGTCGCATTATCCTCCTGGTCAAAGCAGGACAAGCTGTCGATGACTTCATTGATAAACTGGTTCCTCTTCTTGAACCCGGTGACATTATCATTGATGGTGGAAATTCAGAGTACAGAGATACGACTAGACGCTGTAAGAGCCTGAAGGAGAAGAGCCTTCTGTTTGTGGGAAGTGGAGTGAGTGGAGGAGAAGACGGGGCTCGTCACGGACCCTCGCTGATGCCTGGAGGACATAAGAATGCCTGgccacacataaaaaatatttttcagagcATTGCCGCCAAGGTGGGCACAGGAGAGCCGTGCTGTGATTGGgTAGGAGATGAAGGAGCTGGACATTTTGTTAAGATGGTCCATAACGGTATTGAATACGGTGACATGCAGCTGATCTGTGAGGCCTACCATCTGATGAAGGATGTGCTGTGTATGGACCATGATGAAATGGCTCAGGCCTTCGATCAGTGGAATAAGACGGAACTGGACTCTTTTCTCATTGAGATCACTGCCAATATCCTGAAATTCAAGGACGAGGATGGCACTAACCTGCTGCCCAAAATCAGAGACAGCGCTGGGCAAAAAGGCACAGGGAAATGGACGGCTATCTCCGCTTTGGAGTACGGCACACCTGTTACACTGATAGGGGAAGCTGTCTTTGCCAGATGTCTCTCCTCTCTGAAGGACGAGAGGGTTCAGGCCAGTAAGAGCCTCACCGGCCCCCAGGGTGTCAAGTTCACCGGAAACAAGGCACAGTTTCTTGAGGATATCAGAAAGGCTTTGTACGCCTCAAAAATCATTTCATATGCTCAAGGCTTCATGCTGCTCAGACAAGCTGCAGTAGAGTTCGGCTGGTCTCTTAACTATGGTGCTATTGCCCTGATGTGGAGAGGAGGCTGCATTATTCGCAGTGTTTTCTTGGGAAAGATCAAGGAAGCGTTTGACCGGAACTCCGAGCTGCAGAGTTTGCTGCTGGATAACTTCTTCAGTAAAGCTGTACAGGATTGTCAGGAATCGTGGCGTAGGGTAGTAAGTACCGGTGTGCAGCAGGGGATCCCCATGCCGTGCTTCACCACTGCCCTGTCCTTCTATGACGGTTACAGGCACGAGATGCTCCCAGCAAACCTGCTGCAGGCACAGAGGGACTACTTCGGTGCCCACACGTATGAGCTGCTATCAAACCCTGGAAAGTTCATCCACACTAACTGGACAGGTCACGGAGGAAAGGTGTCGTCGTCATCCTACAACGCCTAAAGTCAGTGGTATTAGGTTAAACAGCAAAGAAACCCCATCTCTTCTTGATGAAGGACCAGAGCAGCTGAATACATTCCTCCTGAACATTTGAACTTCAGCCCAAGAGTGTTCAAAtgcatatttctatttatactAAATCATAGTGTATGCACTATTTGTAAGCTCTGTTCTTGTAGTTTTAAGGTCCACCGTTGCAAACACTGAATTTTTGATTTaggagttgttgtttttgaggttCTTCTTGCTGTAGACCGGCCATGCTTTGCCCCCGGAGTTCACGGTGTTAACTCTGGATTATGGGTAACTATTGCACTGCATTAGGCTAAATAAAGATTTCAATCcctttttaa

Function

GO:

id name namespace
GO:0006098 pentose-phosphate shunt biological_process
GO:0050661 NADP binding molecular_function
GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity molecular_function

KEGG:

id description
K00033 PGD, gnd, gntZ; 6-phosphogluconate dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230942 lncRNA downstream 298400 8628699 ~ 8629103 (-) True G155933
TU230786 lncRNA downstream 301861 8624926 ~ 8625642 (-) True G155825
TU230759 lncRNA downstream 394576 8526402 ~ 8532927 (-) True G155803
TU230697 lncRNA downstream 544896 8307279 ~ 8382607 (-) True G155759
TU230649 lncRNA downstream 749985 8176699 ~ 8177518 (-) True G155737
XR_006247890.1 lncRNA upstream 136805 9070384 ~ 9072944 (-) False LOC122329247
XR_006247891.1 lncRNA upstream 136805 9070384 ~ 9072938 (-) True LOC122329247
TU230977 lncRNA upstream 145954 9079533 ~ 9097263 (-) False ctnnbip1
TU230983 lncRNA upstream 219501 9153080 ~ 9153502 (-) True G155968
TU231000 lncRNA upstream 254934 9188513 ~ 9188897 (-) True G155979
XM_043224616.1 mRNA downstream 752 8925176 ~ 8926751 (-) False sst6
XM_043224617.1 mRNA downstream 1200 8925176 ~ 8926303 (-) False sst6
XM_043224611.1 mRNA downstream 7733 8913064 ~ 8919770 (-) False c23h1orf127
XM_043224605.1 mRNA downstream 7778 8913063 ~ 8919725 (-) False c23h1orf127
XM_043224247.1 mRNA upstream 901 8934480 ~ 8997506 (-) False kif1b
XM_043224244.1 mRNA upstream 901 8934480 ~ 8997506 (-) False kif1b
XM_043224238.1 mRNA upstream 901 8934480 ~ 8997506 (-) False kif1b
XM_043224251.1 mRNA upstream 901 8934480 ~ 8997506 (-) False kif1b
XM_043224246.1 mRNA upstream 901 8934480 ~ 8997506 (-) False kif1b
TU230970 other downstream 893 8921564 ~ 8926610 (-) True sst6
XR_006247823.1 other downstream 7778 8913062 ~ 8919725 (-) False c23h1orf127
XR_006247824.1 other downstream 7778 8913063 ~ 8919725 (-) False c23h1orf127
TU230789 other downstream 299112 8625758 ~ 8628391 (-) True G155827
TU230763 other downstream 375526 8545394 ~ 8551977 (-) True G155807
XR_006247818.1 other upstream 262648 9196227 ~ 9209964 (-) False ccdc187
TU231373 other upstream 868206 9801785 ~ 9808232 (-) False hmgn3
TU231374 other upstream 868206 9801785 ~ 9808369 (-) True hmgn3
TU231375 other upstream 898549 9832128 ~ 9833633 (-) False zgc:153284
TU231376 other upstream 898549 9832128 ~ 9833682 (-) False zgc:153284

Expression Profile