RNA id: XM_043225288.1


Basic Information

Item Value
RNA id XM_043225288.1
length 2846
RNA type mRNA
GC content 0.49
exon number 11
gene id galnt6
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 15611615 ~ 15620804 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCATTTGAACGAATGGCACCTGTTGCGTTCAAAGGGAAGCCGGGAGGCCAGTGCGGCTGGTCGCGTGAAACCGTCGCGAGCTTAGTGAACCCTATAGCTCTAAAACTCGAAGTTACAGAGTAACAACATCCGTCCATCGACTCGCAGCTCGAAAAAACGGCGTCTCGTTAGACGAGGAACGGCGTATCTCTCCATATAATCTGCCTCGGGGAGAAGCACATGATTGACTGAAATTATTACAGtttggtAAACGAGAGCAGCCAACAGAATGCGTCTGAGACGTCGTCTCTCCCCCCTGAAGCTTGCTGTTCTGGGCGGCACACTTTTTATGGTCATTCTGGTGGTCCTCCAGAGGGATGTTGGCAGCGGTTCGCTTCAGGACCCGTGGCTGCAAGATCTTTCTAACAAAAAAGAGAGGGTGTTCGAGATGGTCCGCGGTGCGGTCAATAACTTCGCCTTCCAGATCGGAGCCCCGCAGCCCCCGTCGGTGGGAGTGCTGCCCACCCCAGACCGAAACTGCCCCCCGGGTTTCTACACTCTTGCGGATCTCAAACCGTGGATTGAGAGACCTCCTCAGGACCCTCAAGCTCCGGGAGCCGATGCCGCAGCCTTCCAGAAAGCCAGCATGACTGCGGAGGAAGAGAAGGAGAAGCAGGATGGCATGACCAGGCACTGCTTTAACCAGTTCGCCAGTGACCGAATCTCCTTGCACCGCAGTCTTGGAGATGACACCCGTCCACCCGAGTGTGTTGAGCGACGGTTTCGACGATGTCCTAAGCTCCCCACCACGAGTGTGATCATTGTTTTTCATAACGAGGCTTGGTCAACACTTCTGCGCACCGTGTATAGTGTCCTGCACACCTCCCCAGCGGCCTTCCTCAAAGAAATCATACTGGTGGACGACGCCAGCACGGCAGAACACCTCCATGAGAAGCTGGATGAGTATGTGAAGTCACTGAAGATCGTGAAGGTAGTGCGTCAGCCGGAGAGGAAGGGCCTCATCACTGCGAGGCTTCTCGGAGCCGGGAAAGCTCAGGGAGAAATCCTCACCTTCCTGGATGCTCACTGTGAGTGTTTCCATGGCTGGCTCGAGCCTCTCCTCGCTCGCATTGTTGAGGAGCCCACTGCCGTGGTGAGCCCTGAGATCACAACCATTGATTTAAACTCTTTCCAGTTCCACAAGCCTATGGCGTCTACGCGTGCACATAACAGGGGCAACTTTGACTGGAGTCTCACATTTGGCTGGGAGGGCATTCCAGATTACGAGAATGCTAAACGCAAAGATGAGACTTACCCAGTGAAAACTCCAACATTTGCCGGTGGTTTGTTCTCTATATCGAAGGCCTATTTCGAGAAAATTGGGACCTACGATGACAAAATGGAGATATGGGGCGGAGAAAACGTCGAGATGTCTTTCAGGGTGTGGCAGTGCGGCGGACAGTTGGAGATAATCCCCTGCTCCGTGGTGGGTCATGTGTTCCGCACCAAGAGTCCTCACACCTTCCCCAAAGGTACAGAGGTCATTACGCGTAACCAGGTGCGCTTGGCTGAAGTGTGGATGGACGACTACAAGCTGATTTACTATCGACGCAGCCAAAGTGCAGCTAAAATGGCCAAAGAAAAAAACTATGGTGATATATCTGACCGATTGAAACTGAGAGAAACCTTACAATGCAAGAACTTTTCTTGGTACCTAACCAATGTCTACCCAGAAGCCTTTGTCCCTGATCTTACCCCTGTCAAGTTTGGAGCTcttAAGAATAGGGGATCACAGCAATGTCTGGATGTTGGCGAAAGCAACAATGGGGGAAAGCCTGtgattatgtatgtatgtcacAACATGGGCGGCAATCAGTACTTTGAATATACATCACATAAGGAGCTAAGGCATAACATAGGGAAACAGCTCTGCCTGCACGCGTCTCCTTACCCAGAGCCAGTGAAGATTGAGCTCTGTACACTGAAGGGCAAAGGCAGCAGTTTGTCTCCGGAACAAGAATGGGTGTTCACAGAAGAGGATCTGTTGAAGAATCCGTCCTCTGAAAAGTGCCTCCATAAGAAAGGAGACAAGATATTAATGAGCCCCTGCAATCCAGAAGACCATCACCAGCAGTGGACTTTCAGTTGACCTCGTACTCCAATCGAGGAGCAAGGACGTTCACTCCCATAAGACCCACGAGGGAGGGCCAGCAGCCACAGCTCAGGCTGACAAACTCACTGTAGGCCCGAGCGGATGCACTGGGAGTGCATTGGATAGTTCATATCCATAAGCTCCTGATGACATTATGATCAGACTGGGGTCCGGATGCTCAGGGAAGACGGAGATCATGGAGATCAACCCACTGGAGCATCACAGAGTGAGCAATCCAGCAGCACGATTGTTTACTTGATGCAACTTTTTGCCTTATTGATGATGTTTACCGCTGCTTTTAAATGGtgtaggttttatttatttttaaagaaatggaaaattaaatatttttggaacATTGTTAGTGTTAAGGCCAATGAACCGCCGGCCTTGCCAACGAATACTTGTGATGTCTGTATGATCCCAATCATTTGCACATGCTGCAGGggatgagggttttttttttcagctctaGTAAGCTGTCACAAGACGGCGGTTTCAGATCCTTCTTGTGTTTTTGAAGCCGTCAGTATGTATAAAGCAGCATGGGACTTTTGGGAAATCTGTtctaataatgtataaatgtaatttaattgtttcaTCCTCTTCACCTCTACATTATTCTTCTTTATGAAGTTTGACTACACAGATTTGTTCTTTAATGGTTGACATTTTCTAATATttgatgtataaaaaaatacacacttcCCAATCA

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K24698 mftF; mycofactocin glycosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234264 lncRNA downstream 4535 15603848 ~ 15607080 (-) True G158174
TU234059 lncRNA downstream 133846 15476487 ~ 15477769 (-) True G158024
TU233990 lncRNA downstream 272772 15210228 ~ 15338843 (-) True G157984
TU234037 lncRNA downstream 314979 15295888 ~ 15296636 (-) True G158019
TU234028 lncRNA downstream 407665 15202366 ~ 15203950 (-) True G158014
TU234271 lncRNA upstream 1138 15621942 ~ 15702230 (-) True LOC122329227
TU234287 lncRNA upstream 60082 15680886 ~ 15681872 (-) True G158188
XR_006247888.1 lncRNA upstream 78967 15699771 ~ 15717244 (-) False LOC122329227
XR_006247887.1 lncRNA upstream 78967 15699771 ~ 15717244 (-) False LOC122329227
TU234308 lncRNA upstream 107350 15728154 ~ 15789331 (-) True G158198
XM_043225304.1 mRNA downstream 13589 15510955 ~ 15598026 (-) True hspg2
XM_043224314.1 mRNA downstream 104969 15502428 ~ 15506646 (-) True si:dkey-205h13.2
XM_043223969.1 mRNA downstream 121347 15479040 ~ 15490268 (-) False tmem269
XM_043224806.1 mRNA upstream 1677 15622481 ~ 15659407 (-) False adcy6b
XM_043224803.1 mRNA upstream 1677 15622481 ~ 15657947 (-) False adcy6b
XM_043224802.1 mRNA upstream 1677 15622481 ~ 15657947 (-) True adcy6b
XM_043224804.1 mRNA upstream 1677 15622481 ~ 15657928 (-) False adcy6b
XM_043224800.1 mRNA upstream 1677 15622481 ~ 15657924 (-) False adcy6b
XR_006247853.1 other downstream 137238 15347417 ~ 15474377 (-) False magi3a
TU233895 other downstream 1022022 14581094 ~ 14589593 (-) True fitm2
TU233846 other downstream 1280831 14326966 ~ 14330784 (-) True G157909
TU233040 other downstream 2329288 13280256 ~ 13282327 (-) True G157373
TU233029 other downstream 2394207 13141078 ~ 13217408 (-) True G157367
TU234273 other upstream 78465 15699269 ~ 15717250 (-) False LOC122329227
TU234274 other upstream 78465 15699269 ~ 15717250 (-) False LOC122329227
TU234366 other upstream 387302 16008106 ~ 16008915 (-) True G158231
TU234433 other upstream 523029 16143833 ~ 16169834 (-) True G158288
TU234490 other upstream 620006 16240810 ~ 16243395 (-) True tac3a

Expression Profile