RNA id: XM_043225289.1


Basic Information

Item Value
RNA id XM_043225289.1
length 3811
RNA type mRNA
GC content 0.46
exon number 12
gene id pou6f1
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 17316628 ~ 17330887 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCAGCGCCATTTTTTCAATGCAAGACTCGGCCTGCATAAATTATGTTCATGACGTAGTGCAAAAGAGCAAATTTGTGTTAATTTTTCGGCACTTTTCTGCAGATAAGGGTTTACCTTGGCTATTAAGGTGCGCTTGCTTCACCGGCGCGACAGTTAACGGAGAGAcgtcattaaatatttagttaaaaagaGGACCAGCGCTTTCCCGAGCCTCCTTATCAATGCAAATAGCTCTTTTGTGTGCATTCGTAGCGCGCGTCGGAAGCTGTGAgatgaatttttaattatgcatatttaaaacaaactgtggCAAAGCTCGCCGAAGGaggagaaataaagaaaatatccCACCTTTCAGCGGGGGTACTGCGGAGCTGGTAGCACACCCTTCAACCAATATGCAGAATCAGTGATCTCCTCAGAGCTTAGACTTCATCATGGACACTGAGGATCTCCCTGCAAACAATGCGCCACTCACCGTCAATGAACAGCTTTTAGGTTCCTGCACTTTGAAATTCCCAGCACAAGACGACCAGGTCATTGTCATGTCAGGACAGGAGACCATCCGTGTgctggaggtggaggtggatACAGCCTTGTCATCTTCGGGGGTTGATGGGAAGGTGGACTCAGGGGGCGAGGAAGCTGCTGTTCAGACCCTGGATGTAGCTGAGGAGACTCCATTGGACAGTCCAGTAACCACAAGCACTACCACAGCTGTGTCTGTGGAGGTCTCGGCGCCTGCAGTGCAAACCCTGGTCTCAAAAGCCGCCATTAGCGTGTCTCCGGCCCAGCCACAGACCAGCCTGCCCATCACTGTCCAGGCCTGCCCACAGGTCCTGACTCAGGATGGCTTGGCCTCTCTGATGACTGGCATGCTCGCCCAGCAGGGGTCTCTGGGTCAACCCCTGCTCATTCCTCTTAGTATGGCCGGGTCTGTTGGGGGTCAGGGGGGTCTGGCAGTGCTCACCTTACCCACCGCCACTGTGGCCACCCTCCCTGGTCTCGCTGCAGCCAGCCCTGCCGGAGGACTGCTGAAGCTGCCGTTTGCAGGACTGCAAGCCGCTACTGTGTTGAACTCTGTCCAGGCGCAACTGCAGTCACCTGCGCAGGCGGTCCTGCAGCCACAGGTGTCTGCTCTGCAGTCTGTGCAGACAACACAGGCCACGCCAGCCACCACTGCGTCTTTGGCTCAGAAGGTGTCAGAGCCCAGTGCCTCGGTCGCAACACTTCAGACCGCAGGCCTGTCCATCAACCCTGCAATCATTAGTGCAGCTTCTCTGGGAGCTCAGCCTCAGTTCATCAGCTCTCTCACTACAACTCCCATCTTCACCAGTGCCATGTCTAATGTGGCAGGACTCACAGGTCAACTCATTACCAATGCACAGGGCCAGGTAATTGGAACACTTCCCCTGCTGGTCAACCCAGCATCACTGGCCGGAGCTGCCGCAGCCTCTGCGTTACCTGCTCAAGGCCTGCAGGTTCAGACCGTGTCCCCACAGCTGCTCCTCAACTCCCAGGGGCAAATCATTGCTACGATAGGAAACGGTCCAACAGCTGCTGCCCCGTCCGCCGCCTCCGTCCTTCCCAAAGCCACTGTACCCCTGACACTCACCAAGACCAGCACGCCGGGTCCTATTGGGAAAGTGGCTCCATCTAAAGTCATTATTGCTCCCCAGCCGCAAGTGGTTAAATCAGTCACGTCCCTCACCTCATCCATCGCCTGTGGAGACATGCCTACCGTGGGGCAGCTCGTCAGCAagCCACAGTCTGCTGTGAATGAAGAAGAGGCCATTAATCTGGAGGAGATCCGAGAGTTTGCCAAGAATTTTAAGATTCGACGACTCTCTCTGGGGCTGACACAGACTCAAGTGGGTCAGGCTCTCACCGCTACAGAGGGTCCCGCCTACAGTCAGTCAGCCATCTGCAGATTTGAGAAGCTTGACATCACTCCTAAAAGTGCCCAGAAGCTGAAACCCGTGCTGGAGCGCTGGCTGGCAGAGGCTGAGCTCTGGAATCAGAAAGGTCAGCAGAACTTGATGGAGTTTGTGGGTGGAGAGCCCTCCAAGAAGCGCAAGCGGAGAACCAGCTTCACACCGCAGGCCATTGAGGTCCTCAACACTTACTTTGAGAAAAACTCCCTTCCCACCGGCCAAGAGATTACAGAAATCGCCAAGGAGCTGAATTACGACCGAGAGGTGGTTCGGGTCTGGTTTTGTAACCGTCGACAGACTCTGAAAAACACTAGCAAGATCAACGTGTTTCAGGTCCAGTAGGGCTACGGTGTGTCTTCTAGAGGGCAAAAGAAGAACTTTTTGGACTTTGATGTATTGGTGCTAGGtgcaaaatgactgaaatgacTGACTTGCTGTTGTGATGAAGCCAGCGGCACTCAAATTGTGTACGGTCTTAGAATAGCACCGAACATactctttctgtttgtttttatttctgttggtTTCCGTAATGCTGCATGCAGAGTGACTTTTTGCCGTACCATCACAATTTTCAATGCTGAAAtgactatttaaaatatgaaagaagCTACGAAATCCtgtatttgctgtttttatagatgaaaagaaagcacttaatttatgacataaaaaagaaaatgtctaaaatattcTCCCTTGtttagtgttttcttttttgtttttaagttgacCATTTAAAAATTGCTTTATGCTGTAGCAATAACAGCTTTGGATTTTGAGTACATATAGTACATTTAGAAGGGTTTTTTAATCATTCGACcgattttgttttctcttttgctGTAAACTTAAAGCTATGCTCCTTGCCTGAgacaaaaagtaaatgtttttggtcattttaaccTTCCCAGAAGTCCATCTAAAAGGGCACATTCAGATCTCTTTTTAGTTCGGTTTCCAAGAGTAAAGTAGTTCCCTGTCTTTGTGCTTAAATACTGTAGCTGTGTTTTGGTCAATGGACAATCATAGTGCTCTGAATCAGAAAGCATGCCCTGCTTTTATGTGgctaaatcaattttttttcctttttggctgtcattataatttcatattCAGAATTGTATGATTTCAACCGTTATGTCTGTCTGTTGATTCAAATAGGAAACTAACTGTACCAGAGACTACAGTGGCTGATGTAGAATATGTCCTATGGATTTTACTGTTACTGTTTTTGCCATAATCAGTCTAGTAAAGCAAATGTGAATAACAGGAGATGCTATTGAAGAGAGACTTGCATCTATATCTATATGGGGCACTTAAGAAACATTAGATGAGCCGATCCTTTGTTTTTAAGATGATCAATGAGCCGTCAAACAAGTGTTAAAGGATATTACTGATATATAAAGGCAGTTCTTCATTTATGAATTTGGATTGCACTCTCATTTGTCGCAGCAATATTCACGGGCCATATTAACATTTCCCCATTTAGTAAAACCGTCCAGACAGAAATGTGTCGTAACATGTTTCACATGTTTGTTCTAAGCATAAAGCTATATTGTTCTTATGGACTTTCAGTATTTATCTAATGGATTATTCTTGATTGGTACAATGCCATACATTTTACGTTTTAATGTTGTGAAGAACGAATGATATTAGACATAGTGTTTTAACTGATATTATACATAGACTAAACATAAAAGCAGCGTCTGGTCAACGGTTTAATCTGCACAGAGCTCATCGATTTTAAAACggtgcataaatgcatttacagattATTATACAATTGTATGGTACTccattaacaatatttattttgtatcaaTTGTAATGTTTGGTATTAACTtgttatttgaataaattaacacTAAACAGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09368 POU6F; POU domain transcription factor, class 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234890 lncRNA downstream 25085 17289971 ~ 17291543 (-) True G158605
TU234874 lncRNA downstream 91059 17152825 ~ 17225569 (-) True G158591
TU234861 lncRNA downstream 233944 17082207 ~ 17082684 (-) True G158587
TU234860 lncRNA downstream 234076 17082207 ~ 17082552 (-) False G158587
TU234706 lncRNA downstream 588285 16728101 ~ 16728343 (-) True G158484
TU234897 lncRNA upstream 2957 17333844 ~ 17335245 (-) True G158608
TU234920 lncRNA upstream 52455 17383342 ~ 17386554 (-) True G158628
TU234925 lncRNA upstream 63134 17394021 ~ 17395422 (-) True G158632
TU234910 lncRNA upstream 82816 17413703 ~ 17422305 (-) False coq10a
TU235009 lncRNA upstream 415643 17746530 ~ 17748502 (-) True G158706
XM_043225140.1 mRNA downstream 1238 17303211 ~ 17315390 (-) False tfcp2
XM_043225139.1 mRNA downstream 1238 17303211 ~ 17315390 (-) True tfcp2
XM_043223974.1 mRNA downstream 14063 17294178 ~ 17302565 (-) True csrnp2
XM_043225102.1 mRNA downstream 58464 17214599 ~ 17258164 (-) True itga5
XM_043225100.1 mRNA downstream 136796 17176625 ~ 17179832 (-) True slc48a1a
XM_043225031.1 mRNA upstream 13215 17344102 ~ 17350948 (-) True bin2a
XM_043225030.1 mRNA upstream 23260 17354147 ~ 17361384 (-) True racgap1
XM_043224254.1 mRNA upstream 86735 17417622 ~ 17422517 (-) True coq10a
XM_043225107.1 mRNA upstream 102845 17433732 ~ 17438013 (-) True tmed4
XM_043225104.1 mRNA upstream 442518 17773405 ~ 17777920 (-) True LOC122328974
TU234864 other downstream 136849 17176652 ~ 17179779 (-) False slc48a1a
TU234495 other downstream 957923 16357652 ~ 16358705 (-) False G158336
TU234490 other downstream 1073233 16240810 ~ 16243395 (-) True tac3a
TU234433 other downstream 1146794 16143833 ~ 16169834 (-) True G158288
TU234366 other downstream 1307713 16008106 ~ 16008915 (-) True G158231
TU234899 other upstream 8380 17339267 ~ 17343385 (-) True G158609
TU235255 other upstream 715051 18045938 ~ 18047878 (-) False march9
XR_006247822.1 other upstream 900756 18231643 ~ 18235536 (-) False hnrnpa1b
TU235534 other upstream 1416504 18747391 ~ 18754712 (-) True G159076

Expression Profile