RNA id: XM_043225300.1


Basic Information

Item Value
RNA id XM_043225300.1
length 1885
RNA type mRNA
GC content 0.47
exon number 9
gene id ca6
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 13123448 ~ 13128638 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTGGCATTCTGGGTGTAAACCGTTGCAATCAATGTCACTCTCTGCACCTCTTCACGATCCTGTGAACATACATCACACTCACTCAGAGAGTCTGTGCAGCTGGAGCATGGAGCTGTTTGTAGTCCTGTTATACGCCGGACTGGTGAACTTCGCATCAGCTGGAATAGATGGACATAAATGGACGTATTCAGAAGGAGAAGTGGACCAGAAGCACTGGGCAGAGAAGTTTCCCGAGTGCGGCGGCGACCAGCAGTCTCCCATCGACATACAGCGACGCAAAGTGCGTTACAATCCGGGACTGCTACAGCTCGATCTGACCGGCTACGAGGACATGCGCGGCAGCTTTCGCATGACCAACAACGGACATTCAGTGGAAATTAAACTGCCGCCGACTATGAAGATCACCAAGGGGTTTCCAGACCACTACACTGCTGTCCAAATGCATCTGCACTGGGGAGGCTGGGACTTGGAGGCCAGTGGATCAGAGCACACTGTGGATGGCATCCGCTACATGGCAGAACTGCACATCGTTCACTACAACTCTGATAAGTACAGGAGCTTCCACGAGGCCAAAGATAAACAAGACGGGCTTGCAgttttagcctttttttatgAGgatGGTCATTTCGAGAACACATACTACAGTGATTTCATTGCAAACCTGGCAAACATCAAGTATGTAGgTCAGGCTATGAATATCACTAACTTGAACGTACGATCCATGCTTCCAGACAACTTGGGTCACTTTTTCAGATATCAGGGCTCTCTCACCACACCGCCGTGCCATGAGAGCATTCTGTGGACTGTGTTTGATACGCCCATCACCCTCTCTCACAATCAGATCAGGAAATTGGAGAGCACATTAATGGACCATGAAAATAAGACCCTGTGGAACGACTACCGCATGGCCCAGCCTCTGAATGACAGAGTGGTGGAGTCCTCTTTCCTCCCACGCCTGAGCAAAGGAGGAATTTGCCGCCAGGAGGAGATTGAAGCTAAGCTTAAGAGGATTGAGAGCCTTATTGTGTCACTGGACAAAAAAACGGTTTCAGGCCTGCAGCATATATCGTCACTGGTCCTCTACTTCCCAAAAAAGAACGTGGAGAGTTACGCCACTGTGTTCTTGTCCCACCCCATGAACCTCCAATCCTTCACGGCCTGCATGAATGTCCTCATACCACCTTTACAAGACCTAACCGTGCTTTCTTACTCCACGGCACATGACAATGAGTTAATGATCACTTTGGGCACTGAAGTGGGTCTCTGGATTGGAGATGAGTTCGTGAATTTACCATTCGAGCCACAATCTAACGACTGGACAAACTACTGCTTCACCTGGGCTTCACACACAGGAGGGGTTGAACTGTGGGTGAACGGGCTGGTCGGGAAAGAAAGGTACATTCAGGCGGGATACGCCATTCCAGCTGGAGGAAACTTCATTTTGGGAAAGGACCAGGATGGCCTTTTAGGGATCTCAGACAGTGATGCTTTTGTTGGGCAAATGACCGATGTAAATATGTGGGATTATGTTCTGACTGCCTTAGAGATTAAGGAGCAAATGCTGTGCGATAATGGCAAGGTGAAAGGGGACGTCCTGAGCTGGGGAATCACTCCGCTCAGTCTGTTTGGAGGAGTTCAGCTGCAGGCAGGGCAGGTTTGcctctgagagagaaagaggactTTTTCAAACGAATGTTAATATCAGCAATATTAGCTCTGCTAACTTGAACTATATACTATCCCTGGGGAGTAACTGCAATTAAGAAAGATGTATTCTAAtcaatctttattttaaatacaaacatttcaaTGTCGTTTTTAGCCAAATGAATAATGTGAATCATATCTGAAGAATTTCAATAAACATTCGCATTTTTAACCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233023 lncRNA downstream 1422 13121813 ~ 13122026 (-) True G157365
TU233022 lncRNA downstream 2932 13119998 ~ 13120516 (-) True G157364
TU233021 lncRNA downstream 3895 13119183 ~ 13119553 (-) True G157363
TU233019 lncRNA downstream 5280 13117380 ~ 13118168 (-) True G157361
TU233018 lncRNA downstream 7317 13115910 ~ 13116131 (-) True G157360
TU233620 lncRNA upstream 305117 13433755 ~ 13435861 (-) True G157765
TU233665 lncRNA upstream 613619 13742257 ~ 13747171 (-) True G157799
TU233679 lncRNA upstream 644137 13772775 ~ 13773308 (-) True G157813
TU233703 lncRNA upstream 695355 13823993 ~ 13825589 (-) True G157826
TU233774 lncRNA upstream 929199 14057837 ~ 14075937 (-) True G157863
XM_043225087.1 mRNA downstream 43224 13067327 ~ 13080224 (-) True spsb1
XM_043224194.1 mRNA downstream 182563 12936321 ~ 12940885 (-) False LOC122328487
XM_043224195.1 mRNA downstream 182563 12936321 ~ 12940885 (-) True LOC122328487
XM_043224260.1 mRNA downstream 192635 12911070 ~ 12930813 (-) True LOC122328520
XM_043225364.1 mRNA downstream 312879 12771790 ~ 12810569 (-) True phc2a
XM_043224557.1 mRNA upstream 247806 13376444 ~ 13401670 (-) True noc2l
XM_043224798.1 mRNA upstream 307904 13436542 ~ 13442457 (-) True LOC122328822
XM_043225556.1 mRNA upstream 364943 13493581 ~ 13495390 (-) True her9
XM_043224635.1 mRNA upstream 650387 13779025 ~ 13783742 (-) True LOC122328742
XM_043223983.1 mRNA upstream 706418 13835056 ~ 13851039 (-) True arhgef19
TU232479 other downstream 1198798 11922844 ~ 11924650 (-) True G156985
XR_006247884.1 other downstream 1321816 11799922 ~ 11801632 (-) False si:dkey-93l1.9
TU232418 other downstream 1376828 11744119 ~ 11746620 (-) False LOC122328546
XR_006247899.1 other downstream 1378053 11745262 ~ 11745395 (-) True LOC122329329
XR_006247903.1 other downstream 1380645 11742670 ~ 11742803 (-) True LOC122329333
TU233029 other upstream 12440 13141078 ~ 13217408 (-) True G157367
TU233040 other upstream 151618 13280256 ~ 13282327 (-) True G157373
TU233846 other upstream 1198328 14326966 ~ 14330784 (-) True G157909
TU233895 other upstream 1452456 14581094 ~ 14589593 (-) True fitm2
XR_006247853.1 other upstream 2218779 15347417 ~ 15474377 (-) False magi3a

Expression Profile