RNA id: XM_043225315.1


Basic Information

Item Value
RNA id XM_043225315.1
length 1533
RNA type mRNA
GC content 0.41
exon number 8
gene id emd
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11796494 ~ 11799916 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCGACGCTCTGACCACGCCCAGCCTCCGCGAGGCGTCAGGAAGTGATGCGCGTCTCCTCCTCCAGCGTGACACGCCCAGCTCAGAAAAGCGCCTTTTTAACGTCCTGGGATCGTTTAAGATGTCTTCATTAAGTGGAAAATCTGATCAGGAGATCATTCAGCTGCTGGATGAATATGGCATTAAACATGGACCCATAGTAGgatCCACACGAAAGCTCTATGAAAAGAAGCTGAATGAAGCCATGACCAAAAAAGCTAAACCTTCCTCGTCTGACAAGACATACTACCGAGAAGAACaggaGGAAGTGGAATATATTACCTATCATCAGTCCcagccaCAACTGAACATGTACGATGGATCAGGTGATGTCACAAGGAGGTCAAGGGTCACCGAAACCGACTTTTCCCATGACATACGGAGGTCAAAGGTGACCGATTACCGAGATGAAGACAAAGGCTATAACAATGAGCCCATTATCAGCCCAACTCGCTTGTCCTATCAGAGTTCTTCTCGGCCAGGCCCATCCGTCTCCAGATCCGTTCAGCACGTTCAGTCCAGTCCAGAGACCAGCAAATCTGGAGGTGTGCCGGGCTGGCTCCGTGTCTTGGTGTTTCTAATCATTGCtgtgtttctttattatgtGTACACATGTATGGAGCCTGCAGAGGAGACCCCCTTTAAAAACCTCCAGTAGAGGAGCATGTTCATCAGCCCCAAACTAAACTGATTCAGTACAAGAACAGCCAAAAACATAGCCTGGAATAAGAGCTAATAATATTCTGAGTACAGAACGTGAGGTTTAGTAAGTCGTAAACGTGTGCATAATGCGCACATTTTTATCCAAATACttgctttgtgcatttttataattaaataggTACAGATGTGGACGACCATATCCATTTTAAgaaaattctgatttttttgGATCATCGGGGCATTAAAGTGTCTTTAAAACGTATTTTCTCATGAGTTGTATGTAAAATCCTTTTGCTGTGGCCGTGTATTTAGGGCTTGTGTTCATGTGCCATTCTGTAGCACTATTTGTTACACCGTTTCAATTTGCTGTCTTCAGTGTTAAaccctttttaaaataaattctgtggTGCTGAACATAAAATGAAAGAGATTCGAGCAAAGAAGTACACAAGCGTATGCtaatttgtgaaaaatagtTACTGTTAAAAGCTATTGTTAGGTACAATGCAATAACCCCTTCAGAGAAGActaaattcacaatattacttaaAGTGCCTTACTAGTGTGGAACATTCTGAAGGGTAAgggttttattaaacaaatgtcTTTCATTACTTTCCTCCTGCTGCTTGTCCCTGACATGTAAACACTACCaaagtttatatatgtattgttcTTACAAGAATtttagatgaataaaacatttctcattttgcaAAATGATTGAAGGCAAAAAGATGCCCAAAAACTTCTTAAATCCCCAACGTTTGCTTGAAAAAATGTACTGTctttaaaaagatttgaaatgttatctaataaagttacatttgtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232239 lncRNA upstream 49924 11716771 ~ 11746570 (+) False kctd6b
TU232236 lncRNA upstream 50716 11697414 ~ 11745778 (+) False kctd6b
TU232225 lncRNA upstream 50716 11742108 ~ 11745778 (+) False kctd6b
TU232230 lncRNA upstream 50716 11742108 ~ 11745778 (+) False kctd6b
TU232237 lncRNA upstream 50716 11742108 ~ 11745778 (+) False kctd6b
TU232272 lncRNA downstream 27825 11827741 ~ 11926375 (+) True G156843
TU232268 lncRNA downstream 104974 11904890 ~ 11925798 (+) False G156843
TU232326 lncRNA downstream 146768 11946684 ~ 11972922 (+) True G156881
XR_006247800.1 lncRNA downstream 230230 12030146 ~ 12037888 (+) True LOC122328486
XR_006247799.1 lncRNA downstream 230230 12030146 ~ 12034957 (+) False LOC122328486
XM_043224287.1 mRNA upstream 1761 11762429 ~ 11794733 (+) True flna
XM_043224290.1 mRNA upstream 54623 11738795 ~ 11741871 (+) True dnase1l1
XM_043224298.1 mRNA upstream 64491 11730980 ~ 11732003 (+) False LOC122328549
XM_043224294.1 mRNA upstream 66315 11727245 ~ 11730179 (+) False kctd6b
XM_043224293.1 mRNA upstream 66315 11727248 ~ 11730179 (+) True kctd6b
XM_043224346.1 mRNA downstream 66802 11866718 ~ 11868437 (+) True cfap126
XM_043224774.1 mRNA downstream 122968 11922884 ~ 11924595 (+) True tnnc1b
XM_043225157.1 mRNA downstream 248845 12048761 ~ 12060362 (+) False tnnc2.1
XM_043225156.1 mRNA downstream 253458 12053374 ~ 12060362 (+) True tnnc2.1
XM_043225158.1 mRNA downstream 261800 12061716 ~ 12064341 (+) True tnnc2.2
unassigned_transcript_2622 other upstream 277958 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 280623 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2619 other upstream 282648 11513773 ~ 11513846 (+) True trnan-guu_36
unassigned_transcript_2618 other upstream 283796 11512625 ~ 11512698 (+) True trnan-guu_35
TU231904 other upstream 619461 11174421 ~ 11177033 (+) True G156586
XR_006247901.1 other downstream 2254448 14054364 ~ 14054500 (+) True LOC122329331
XR_006247900.1 other downstream 2256769 14056685 ~ 14056821 (+) True LOC122329330
XR_006247782.1 other downstream 2499785 14299701 ~ 14343274 (+) False si:dkey-151g10.3
TU233368 other downstream 2884074 14683990 ~ 14685316 (+) False LOC122328906
TU233419 other downstream 2912231 14712147 ~ 14714533 (+) True LOC122328914

Expression Profile